PDB Short entry for 2PID HEADER LIGASE 13-APR-07 2PID TITLE CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TYROSYL-TRNA SYNTHETASE IN TITLE 2 COMPLEX WITH AN ADENYLATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 28-375; COMPND 5 SYNONYM: TYROSINE-TRNA LIGASE, TYRRS; COMPND 6 EC: 6.1.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YARS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE70-MT-TYRRS-[DELTA]S4 KEYWDS AMINOACYL-TRNA SYNTHETASE, PROTEIN-SUBSTRATE COMPLEX, ATP-BINDING, KEYWDS 2 LIGASE, MITOCHONDRION, NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR L.BONNEFOND,M.FRUGIER,E.TOUZE,B.LORBER,C.FLORENTZ,R.GIEGE,C.SAUTER, AUTHOR 2 J.RUDINGER-THIRION REVDAT 6 13-MAR-24 2PID 1 COMPND SOURCE REVDAT 5 30-AUG-23 2PID 1 REMARK SEQADV REVDAT 4 13-JUL-11 2PID 1 VERSN REVDAT 3 24-FEB-09 2PID 1 VERSN REVDAT 2 04-DEC-07 2PID 1 JRNL REVDAT 1 23-OCT-07 2PID 0 JRNL AUTH L.BONNEFOND,M.FRUGIER,E.TOUZE,B.LORBER,C.FLORENTZ,R.GIEGE, JRNL AUTH 2 C.SAUTER,J.RUDINGER-THIRION JRNL TITL CRYSTAL STRUCTURE OF HUMAN MITOCHONDRIAL TYROSYL-TRNA JRNL TITL 2 SYNTHETASE REVEALS COMMON AND IDIOSYNCRATIC FEATURES. JRNL REF STRUCTURE V. 15 1505 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17997975 JRNL DOI 10.1016/J.STR.2007.09.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BONNEFOND,M.FRUGIER,E.TOUZE,B.LORBER,C.FLORENTZ,R.GIEGE, REMARK 1 AUTH 2 J.RUDINGER-THIRION,C.SAUTER REMARK 1 TITL TYROSYL-TRNA SYNTHETASE: THE FIRST CRYSTALLIZATION OF A REMARK 1 TITL 2 HUMAN MITOCHONDRIAL AMINOACYL-TRNA SYNTHETASE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 338 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2251160.430 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1700 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3132 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5102 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.60000 REMARK 3 B22 (A**2) : 3.12000 REMARK 3 B33 (A**2) : -10.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.710 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.830 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.840 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.200 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.800 ; 3.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 46.68 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : YSA.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : YSA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-APR-07. REMARK 100 THE DEPOSITION ID IS D_1000042407. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97565 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34168 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.09800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42700 REMARK 200 R SYM FOR SHELL (I) : 0.42700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1VBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3 MG/ML PROTEIN, 30% (M/V) PEG 4000, REMARK 280 200 MM AMMONIUM ACETATE, 100 MM SODIUM ACETATE PH 4.6, 100 MM REMARK 280 TRIS-HCL PH 7.5, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.30000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.30000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 SER A 31 REMARK 465 HIS A 32 REMARK 465 SER A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 ASP A 66 REMARK 465 ARG A 67 REMARK 465 GLY A 68 REMARK 465 THR A 69 REMARK 465 ALA A 70 REMARK 465 SER A 71 REMARK 465 PHE A 72 REMARK 465 SER A 276 REMARK 465 THR A 277 REMARK 465 THR A 278 REMARK 465 GLY A 279 REMARK 465 ALA A 280 REMARK 465 LYS A 281 REMARK 465 LEU A 282 REMARK 465 GLY A 283 REMARK 465 LYS A 284 REMARK 465 SER A 285 REMARK 465 ALA A 286 REMARK 465 GLY A 287 REMARK 465 ASN A 288 REMARK 465 TYR A 374 REMARK 465 HIS A 375 REMARK 465 ARG A 376 REMARK 465 SER A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 465 HIS A 381 REMARK 465 HIS A 382 REMARK 465 HIS A 383 REMARK 465 MET B 28 REMARK 465 ARG B 29 REMARK 465 GLY B 30 REMARK 465 SER B 31 REMARK 465 HIS B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 ALA B 35 REMARK 465 GLN B 36 REMARK 465 SER B 276 REMARK 465 THR B 277 REMARK 465 THR B 278 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 LYS B 281 REMARK 465 LEU B 282 REMARK 465 GLY B 283 REMARK 465 LYS B 284 REMARK 465 SER B 285 REMARK 465 ALA B 286 REMARK 465 GLY B 287 REMARK 465 ASN B 288 REMARK 465 TYR B 374 REMARK 465 HIS B 375 REMARK 465 ARG B 376 REMARK 465 SER B 377 REMARK 465 HIS B 378 REMARK 465 HIS B 379 REMARK 465 HIS B 380 REMARK 465 HIS B 381 REMARK 465 HIS B 382 REMARK 465 HIS B 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 57 -132.63 49.62 REMARK 500 ILE A 59 -149.07 -130.65 REMARK 500 GLU A 60 123.04 -178.56 REMARK 500 LEU A 61 -56.04 -17.59 REMARK 500 ASP A 161 17.00 -140.70 REMARK 500 LYS A 296 -34.92 -132.41 REMARK 500 GLU A 339 58.78 -143.08 REMARK 500 ALA B 70 -152.35 52.72 REMARK 500 PHE B 72 136.78 -174.63 REMARK 500 LEU B 119 -60.36 -97.36 REMARK 500 SER B 210 150.01 -42.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YSA A 384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE YSA B 384 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1VBM RELATED DB: PDB REMARK 900 TYROSYL-TRNA SYNTHETASE FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 3TS1 RELATED DB: PDB REMARK 900 TYROSYL-TRNA SYNTHETASE FROM BACILLUS STEAROTHERMOPHILUS DBREF 2PID A 32 375 UNP Q9Y2Z4 SYYM_HUMAN 32 375 DBREF 2PID B 32 375 UNP Q9Y2Z4 SYYM_HUMAN 32 375 SEQADV 2PID MET A 28 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID ARG A 29 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID GLY A 30 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID SER A 31 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID ARG A 376 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID SER A 377 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 378 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 379 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 380 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 381 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 382 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS A 383 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID MET B 28 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID ARG B 29 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID GLY B 30 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID SER B 31 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID ARG B 376 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID SER B 377 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 378 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 379 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 380 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 381 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 382 UNP Q9Y2Z4 EXPRESSION TAG SEQADV 2PID HIS B 383 UNP Q9Y2Z4 EXPRESSION TAG SEQRES 1 A 356 MET ARG GLY SER HIS SER GLY ALA GLN GLY LEU LEU ALA SEQRES 2 A 356 ALA GLN LYS ALA ARG GLY LEU PHE LYS ASP PHE PHE PRO SEQRES 3 A 356 GLU THR GLY THR LYS ILE GLU LEU PRO GLU LEU PHE ASP SEQRES 4 A 356 ARG GLY THR ALA SER PHE PRO GLN THR ILE TYR CYS GLY SEQRES 5 A 356 PHE ASP PRO THR ALA ASP SER LEU HIS VAL GLY HIS LEU SEQRES 6 A 356 LEU ALA LEU LEU GLY LEU PHE HIS LEU GLN ARG ALA GLY SEQRES 7 A 356 HIS ASN VAL ILE ALA LEU VAL GLY GLY ALA THR ALA ARG SEQRES 8 A 356 LEU GLY ASP PRO SER GLY ARG THR LYS GLU ARG GLU ALA SEQRES 9 A 356 LEU GLU THR GLU ARG VAL ARG ALA ASN ALA ARG ALA LEU SEQRES 10 A 356 ARG LEU GLY LEU GLU ALA LEU ALA ALA ASN HIS GLN GLN SEQRES 11 A 356 LEU PHE THR ASP GLY ARG SER TRP GLY SER PHE THR VAL SEQRES 12 A 356 LEU ASP ASN SER ALA TRP TYR GLN LYS GLN HIS LEU VAL SEQRES 13 A 356 ASP PHE LEU ALA ALA VAL GLY GLY HIS PHE ARG MET GLY SEQRES 14 A 356 THR LEU LEU SER ARG GLN SER VAL GLN LEU ARG LEU LYS SEQRES 15 A 356 SER PRO GLU GLY MET SER LEU ALA GLU PHE PHE TYR GLN SEQRES 16 A 356 VAL LEU GLN ALA TYR ASP PHE TYR TYR LEU PHE GLN ARG SEQRES 17 A 356 TYR GLY CYS ARG VAL GLN LEU GLY GLY SER ASP GLN LEU SEQRES 18 A 356 GLY ASN ILE MET SER GLY TYR GLU PHE ILE ASN LYS LEU SEQRES 19 A 356 THR GLY GLU ASP VAL PHE GLY ILE THR VAL PRO LEU ILE SEQRES 20 A 356 THR SER THR THR GLY ALA LYS LEU GLY LYS SER ALA GLY SEQRES 21 A 356 ASN ALA VAL TRP LEU ASN ARG ASP LYS THR SER PRO PHE SEQRES 22 A 356 GLU LEU TYR GLN PHE PHE VAL ARG GLN PRO ASP ASP SER SEQRES 23 A 356 VAL GLU ARG TYR LEU LYS LEU PHE THR PHE LEU PRO LEU SEQRES 24 A 356 PRO GLU ILE ASP HIS ILE MET GLN LEU HIS VAL LYS GLU SEQRES 25 A 356 PRO GLU ARG ARG GLY PRO GLN LYS ARG LEU ALA ALA GLU SEQRES 26 A 356 VAL THR LYS LEU VAL HIS GLY ARG GLU GLY LEU ASP SER SEQRES 27 A 356 ALA LYS ARG CYS THR GLN ALA LEU TYR HIS ARG SER HIS SEQRES 28 A 356 HIS HIS HIS HIS HIS SEQRES 1 B 356 MET ARG GLY SER HIS SER GLY ALA GLN GLY LEU LEU ALA SEQRES 2 B 356 ALA GLN LYS ALA ARG GLY LEU PHE LYS ASP PHE PHE PRO SEQRES 3 B 356 GLU THR GLY THR LYS ILE GLU LEU PRO GLU LEU PHE ASP SEQRES 4 B 356 ARG GLY THR ALA SER PHE PRO GLN THR ILE TYR CYS GLY SEQRES 5 B 356 PHE ASP PRO THR ALA ASP SER LEU HIS VAL GLY HIS LEU SEQRES 6 B 356 LEU ALA LEU LEU GLY LEU PHE HIS LEU GLN ARG ALA GLY SEQRES 7 B 356 HIS ASN VAL ILE ALA LEU VAL GLY GLY ALA THR ALA ARG SEQRES 8 B 356 LEU GLY ASP PRO SER GLY ARG THR LYS GLU ARG GLU ALA SEQRES 9 B 356 LEU GLU THR GLU ARG VAL ARG ALA ASN ALA ARG ALA LEU SEQRES 10 B 356 ARG LEU GLY LEU GLU ALA LEU ALA ALA ASN HIS GLN GLN SEQRES 11 B 356 LEU PHE THR ASP GLY ARG SER TRP GLY SER PHE THR VAL SEQRES 12 B 356 LEU ASP ASN SER ALA TRP TYR GLN LYS GLN HIS LEU VAL SEQRES 13 B 356 ASP PHE LEU ALA ALA VAL GLY GLY HIS PHE ARG MET GLY SEQRES 14 B 356 THR LEU LEU SER ARG GLN SER VAL GLN LEU ARG LEU LYS SEQRES 15 B 356 SER PRO GLU GLY MET SER LEU ALA GLU PHE PHE TYR GLN SEQRES 16 B 356 VAL LEU GLN ALA TYR ASP PHE TYR TYR LEU PHE GLN ARG SEQRES 17 B 356 TYR GLY CYS ARG VAL GLN LEU GLY GLY SER ASP GLN LEU SEQRES 18 B 356 GLY ASN ILE MET SER GLY TYR GLU PHE ILE ASN LYS LEU SEQRES 19 B 356 THR GLY GLU ASP VAL PHE GLY ILE THR VAL PRO LEU ILE SEQRES 20 B 356 THR SER THR THR GLY ALA LYS LEU GLY LYS SER ALA GLY SEQRES 21 B 356 ASN ALA VAL TRP LEU ASN ARG ASP LYS THR SER PRO PHE SEQRES 22 B 356 GLU LEU TYR GLN PHE PHE VAL ARG GLN PRO ASP ASP SER SEQRES 23 B 356 VAL GLU ARG TYR LEU LYS LEU PHE THR PHE LEU PRO LEU SEQRES 24 B 356 PRO GLU ILE ASP HIS ILE MET GLN LEU HIS VAL LYS GLU SEQRES 25 B 356 PRO GLU ARG ARG GLY PRO GLN LYS ARG LEU ALA ALA GLU SEQRES 26 B 356 VAL THR LYS LEU VAL HIS GLY ARG GLU GLY LEU ASP SER SEQRES 27 B 356 ALA LYS ARG CYS THR GLN ALA LEU TYR HIS ARG SER HIS SEQRES 28 B 356 HIS HIS HIS HIS HIS HET YSA A 384 35 HET YSA B 384 35 HETNAM YSA 5'-O-[N-(L-TYROSYL)SULFAMOYL]ADENOSINE HETSYN YSA TYROSYLADENYLATE FORMUL 3 YSA 2(C19 H23 N7 O8 S) FORMUL 5 HOH *90(H2 O) HELIX 1 1 GLY A 37 GLY A 46 1 10 HELIX 2 2 GLU A 60 PHE A 65 5 6 HELIX 3 3 HIS A 88 ALA A 104 1 17 HELIX 4 4 ALA A 115 LEU A 119 5 5 HELIX 5 5 GLU A 133 PHE A 159 1 27 HELIX 6 6 ASN A 173 GLN A 178 1 6 HELIX 7 7 HIS A 181 GLY A 190 1 10 HELIX 8 8 GLY A 191 PHE A 193 5 3 HELIX 9 9 ARG A 194 ARG A 201 1 8 HELIX 10 10 ARG A 201 LYS A 209 1 9 HELIX 11 11 SER A 215 GLY A 237 1 23 HELIX 12 12 GLN A 247 THR A 262 1 16 HELIX 13 13 SER A 298 ARG A 308 1 11 HELIX 14 14 PRO A 310 THR A 322 1 13 HELIX 15 15 PRO A 325 GLU A 339 1 15 HELIX 16 16 PRO A 340 ARG A 342 5 3 HELIX 17 17 ARG A 343 LEU A 373 1 31 HELIX 18 18 GLY B 37 ARG B 45 1 9 HELIX 19 19 GLU B 60 ASP B 66 1 7 HELIX 20 20 HIS B 88 ALA B 104 1 17 HELIX 21 21 ALA B 115 LEU B 119 5 5 HELIX 22 22 GLU B 133 PHE B 159 1 27 HELIX 23 23 ASN B 173 GLN B 178 1 6 HELIX 24 24 HIS B 181 GLY B 190 1 10 HELIX 25 25 ARG B 194 ARG B 201 1 8 HELIX 26 26 ARG B 201 SER B 210 1 10 HELIX 27 27 SER B 215 GLY B 237 1 23 HELIX 28 28 GLN B 247 GLY B 263 1 17 HELIX 29 29 SER B 298 ARG B 308 1 11 HELIX 30 30 PRO B 310 THR B 322 1 13 HELIX 31 31 PRO B 325 GLU B 339 1 15 HELIX 32 32 PRO B 340 ARG B 342 5 3 HELIX 33 33 ARG B 343 LEU B 373 1 31 SHEET 1 A 6 ASP A 50 PHE A 52 0 SHEET 2 A 6 PHE A 267 VAL A 271 -1 O GLY A 268 N PHE A 52 SHEET 3 A 6 VAL A 240 GLY A 244 1 N GLN A 241 O ILE A 269 SHEET 4 A 6 THR A 75 PHE A 80 1 N TYR A 77 O LEU A 242 SHEET 5 A 6 ASN A 107 VAL A 112 1 O LEU A 111 N PHE A 80 SHEET 6 A 6 PHE A 168 ASP A 172 1 O LEU A 171 N VAL A 112 SHEET 1 B 6 ASP B 50 PHE B 52 0 SHEET 2 B 6 PHE B 267 VAL B 271 -1 O GLY B 268 N PHE B 52 SHEET 3 B 6 VAL B 240 GLY B 244 1 N GLN B 241 O PHE B 267 SHEET 4 B 6 THR B 75 PHE B 80 1 N TYR B 77 O LEU B 242 SHEET 5 B 6 ASN B 107 VAL B 112 1 O LEU B 111 N PHE B 80 SHEET 6 B 6 PHE B 168 ASP B 172 1 O LEU B 171 N VAL B 112 CISPEP 1 PHE A 52 PRO A 53 0 -0.26 CISPEP 2 PHE B 52 PRO B 53 0 -0.19 CISPEP 3 PHE B 72 PRO B 73 0 -0.08 SITE 1 AC1 22 TYR A 77 GLY A 79 ASP A 81 GLY A 90 SITE 2 AC1 22 HIS A 91 LEU A 111 THR A 116 ASP A 121 SITE 3 AC1 22 TYR A 221 GLN A 225 ASP A 228 GLN A 241 SITE 4 AC1 22 GLY A 243 GLY A 244 ASP A 246 GLN A 247 SITE 5 AC1 22 PRO A 272 LEU A 273 ILE A 274 HOH A 388 SITE 6 AC1 22 HOH A 400 HOH A 403 SITE 1 AC2 21 TYR B 77 GLY B 79 ASP B 81 GLY B 90 SITE 2 AC2 21 HIS B 91 ALA B 94 LEU B 111 THR B 116 SITE 3 AC2 21 ASP B 121 TYR B 221 GLN B 225 ASP B 228 SITE 4 AC2 21 GLN B 241 GLY B 243 GLY B 244 ASP B 246 SITE 5 AC2 21 GLN B 247 PRO B 272 LEU B 273 ILE B 274 SITE 6 AC2 21 HOH B 397 CRYST1 54.000 62.400 194.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005139 0.00000