PDB Short entry for 2PQ5 HEADER HYDROLASE 01-MAY-07 2PQ5 TITLE CRYSTAL STRUCTURE OF DUAL SPECIFICITY PROTEIN PHOSPHATASE 13 (DUSP13) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN PHOSPHATASE 13; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TESTIS- AND SKELETAL-MUSCLE-SPECIFIC DSP, DUAL SPECIFICITY COMPND 5 PHOSPHATASE SKRP4; COMPND 6 EC: 3.1.3.48, 3.1.3.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DUSP13, TMDP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA-PHAGE RESISTANT; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS PROTEIN PHOSPHATASE, HYDROLASE, DUAL SPECIFICITY PHOSPHATASE, DUSP13, KEYWDS 2 TESTIS AND SKELETAL MUSCLE SPECIFIC DSP, STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,E.SALAH,P.SAVITSKY,A.BARR,N.PANTIC,F.NIESEN,N.BURGESS- AUTHOR 2 BROWN,G.BERRIDGE,G.BUNKOCZI,J.UPPENBERG,A.C.W.PIKE,M.SUNDSTROM, AUTHOR 3 C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,F.VON DELFT,S.KNAPP,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 5 30-AUG-23 2PQ5 1 SEQADV REVDAT 4 18-OCT-17 2PQ5 1 REMARK REVDAT 3 05-DEC-12 2PQ5 1 AUTHOR JRNL VERSN REVDAT 2 24-FEB-09 2PQ5 1 VERSN REVDAT 1 22-MAY-07 2PQ5 0 JRNL AUTH E.UGOCHUKWU,E.SALAH,P.SAVITSKY,A.BARR,N.PANTIC,F.NIESEN, JRNL AUTH 2 N.BURGESS-BROWN,G.BERRIDGE,G.BUNKOCZI,J.UPPENBERG, JRNL AUTH 3 A.C.W.PIKE,M.SUNDSTROM,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS, JRNL AUTH 4 F.VON DELFT,S.KNAPP JRNL TITL CRYSTAL STRUCTURE OF DUAL SPECIFICITY PROTEIN PHOSPHATASE 13 JRNL TITL 2 (DUSP13). JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.195 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.177 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2017 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 41773 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.177 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 35299 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 5258.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 5088.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 0 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 21036 REMARK 3 NUMBER OF RESTRAINTS : 37224 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 ANGLE DISTANCES (A) : 0.022 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.058 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.024 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.027 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.033 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.014 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.056 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2PQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : 0.08800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GWO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.15 M AMMONIUM CITRATE REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.26767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 202.53533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 202.53533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 101.26767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 GLN A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 10 REMARK 465 ARG A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 ILE A 14 REMARK 465 HIS A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 VAL A 18 REMARK 465 GLN A 19 REMARK 465 ALA A 20 REMARK 465 SER A 21 REMARK 465 PRO A 22 REMARK 465 TYR A 23 REMARK 465 GLN A 24 REMARK 465 GLU A 194 REMARK 465 THR A 195 REMARK 465 GLY A 196 REMARK 465 ARG A 197 REMARK 465 PHE A 198 REMARK 465 ALA A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 LYS B 6 REMARK 465 GLN B 7 REMARK 465 ASP B 8 REMARK 465 LEU B 9 REMARK 465 ARG B 10 REMARK 465 ARG B 11 REMARK 465 PRO B 12 REMARK 465 LYS B 13 REMARK 465 ILE B 14 REMARK 465 HIS B 15 REMARK 465 GLY B 16 REMARK 465 ALA B 17 REMARK 465 VAL B 18 REMARK 465 GLN B 19 REMARK 465 ALA B 20 REMARK 465 SER B 21 REMARK 465 PRO B 22 REMARK 465 TYR B 23 REMARK 465 GLN B 24 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 THR B 195 REMARK 465 GLY B 196 REMARK 465 ARG B 197 REMARK 465 PHE B 198 REMARK 465 ALA B 199 REMARK 465 HIS B 200 REMARK 465 HIS B 201 REMARK 465 HIS B 202 REMARK 465 HIS B 203 REMARK 465 HIS B 204 REMARK 465 HIS B 205 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 LEU C 4 REMARK 465 GLN C 5 REMARK 465 LYS C 6 REMARK 465 GLN C 7 REMARK 465 ASP C 8 REMARK 465 LEU C 9 REMARK 465 ARG C 10 REMARK 465 ARG C 11 REMARK 465 PRO C 12 REMARK 465 LYS C 13 REMARK 465 ILE C 14 REMARK 465 HIS C 15 REMARK 465 GLY C 16 REMARK 465 ALA C 17 REMARK 465 VAL C 18 REMARK 465 GLN C 19 REMARK 465 ALA C 20 REMARK 465 SER C 21 REMARK 465 PRO C 22 REMARK 465 TYR C 23 REMARK 465 ARG C 193 REMARK 465 GLU C 194 REMARK 465 THR C 195 REMARK 465 GLY C 196 REMARK 465 ARG C 197 REMARK 465 PHE C 198 REMARK 465 ALA C 199 REMARK 465 HIS C 200 REMARK 465 HIS C 201 REMARK 465 HIS C 202 REMARK 465 HIS C 203 REMARK 465 HIS C 204 REMARK 465 HIS C 205 REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 SER D 3 REMARK 465 LEU D 4 REMARK 465 GLN D 5 REMARK 465 LYS D 6 REMARK 465 GLN D 7 REMARK 465 ASP D 8 REMARK 465 LEU D 9 REMARK 465 ARG D 10 REMARK 465 ARG D 11 REMARK 465 PRO D 12 REMARK 465 LYS D 13 REMARK 465 ILE D 14 REMARK 465 HIS D 15 REMARK 465 GLY D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 GLN D 19 REMARK 465 ALA D 20 REMARK 465 SER D 21 REMARK 465 PRO D 22 REMARK 465 TYR D 23 REMARK 465 GLN D 24 REMARK 465 GLU D 194 REMARK 465 THR D 195 REMARK 465 GLY D 196 REMARK 465 ARG D 197 REMARK 465 PHE D 198 REMARK 465 ALA D 199 REMARK 465 HIS D 200 REMARK 465 HIS D 201 REMARK 465 HIS D 202 REMARK 465 HIS D 203 REMARK 465 HIS D 204 REMARK 465 HIS D 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 68 CG1 CG2 CD1 REMARK 470 LYS A 82 CE NZ REMARK 470 LYS A 90 CD CE NZ REMARK 470 ARG A 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 182 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 193 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 38 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 68 CG1 CG2 CD1 REMARK 470 LYS B 82 CE NZ REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 131 CG CD OE1 NE2 REMARK 470 ARG B 133 NE CZ NH1 NH2 REMARK 470 ARG B 182 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 24 CG CD OE1 NE2 REMARK 470 TRP C 36 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 36 CZ3 CH2 REMARK 470 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 68 CG1 CG2 CD1 REMARK 470 LYS C 82 CE NZ REMARK 470 ARG C 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 131 CG CD OE1 NE2 REMARK 470 ARG C 133 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 158 CG OD1 ND2 REMARK 470 ARG D 38 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 68 CG1 CG2 CD1 REMARK 470 ARG D 93 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 131 CG CD OE1 NE2 REMARK 470 ARG D 193 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 7.7 DEGREES REMARK 500 TYR A 100 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 190 CD - NE - CZ ANGL. DEV. = 35.4 DEGREES REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 33 CG - CD - NE ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG B 33 CD - NE - CZ ANGL. DEV. = 22.1 DEGREES REMARK 500 ARG B 62 CD - NE - CZ ANGL. DEV. = 17.7 DEGREES REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 144 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 190 CD - NE - CZ ANGL. DEV. = 30.9 DEGREES REMARK 500 ARG B 190 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG C 62 CD - NE - CZ ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG C 62 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG C 190 CD - NE - CZ ANGL. DEV. = 28.7 DEGREES REMARK 500 ARG C 190 NE - CZ - NH2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG D 62 CD - NE - CZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ARG D 62 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG D 182 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG D 190 CD - NE - CZ ANGL. DEV. = 27.1 DEGREES REMARK 500 ARG D 190 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 50 143.39 -172.77 REMARK 500 GLN A 84 -134.19 -133.88 REMARK 500 CYS A 138 -129.69 -136.65 REMARK 500 SER A 143 -75.67 -125.23 REMARK 500 CYS A 175 77.85 -172.95 REMARK 500 GLN B 84 -135.55 -120.77 REMARK 500 ASP B 86 66.48 -69.11 REMARK 500 THR B 87 -61.14 -95.91 REMARK 500 CYS B 138 -141.63 -127.18 REMARK 500 SER B 143 -70.03 -124.91 REMARK 500 GLN B 169 2.53 -67.18 REMARK 500 ARG B 172 124.09 178.57 REMARK 500 CYS B 175 81.65 -168.30 REMARK 500 PRO C 51 114.78 -36.42 REMARK 500 GLN C 84 -118.54 -115.05 REMARK 500 CYS C 138 -133.82 -134.90 REMARK 500 SER C 143 -76.61 -124.97 REMARK 500 CYS C 175 82.76 -166.97 REMARK 500 ALA D 40 -179.36 -58.74 REMARK 500 GLN D 84 -160.26 -117.43 REMARK 500 VAL D 85 88.50 -67.38 REMARK 500 CYS D 138 -129.83 -131.79 REMARK 500 SER D 143 -74.11 -121.10 REMARK 500 ARG D 172 120.29 -170.41 REMARK 500 CYS D 175 78.25 -164.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2GWO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TMDP DBREF 2PQ5 A 1 198 UNP Q9UII6 DUS13_HUMAN 1 198 DBREF 2PQ5 B 1 198 UNP Q9UII6 DUS13_HUMAN 1 198 DBREF 2PQ5 C 1 198 UNP Q9UII6 DUS13_HUMAN 1 198 DBREF 2PQ5 D 1 198 UNP Q9UII6 DUS13_HUMAN 1 198 SEQADV 2PQ5 ALA A 199 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 200 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 201 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 202 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 203 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 204 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS A 205 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 ALA B 199 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 200 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 201 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 202 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 203 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 204 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS B 205 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 ALA C 199 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 200 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 201 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 202 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 203 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 204 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS C 205 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 ALA D 199 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 200 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 201 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 202 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 203 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 204 UNP Q9UII6 CLONING ARTIFACT SEQADV 2PQ5 HIS D 205 UNP Q9UII6 CLONING ARTIFACT SEQRES 1 A 205 MET ASP SER LEU GLN LYS GLN ASP LEU ARG ARG PRO LYS SEQRES 2 A 205 ILE HIS GLY ALA VAL GLN ALA SER PRO TYR GLN PRO PRO SEQRES 3 A 205 THR LEU ALA SER LEU GLN ARG LEU LEU TRP VAL ARG GLN SEQRES 4 A 205 ALA ALA THR LEU ASN HIS ILE ASP GLU VAL TRP PRO SER SEQRES 5 A 205 LEU PHE LEU GLY ASP ALA TYR ALA ALA ARG ASP LYS SER SEQRES 6 A 205 LYS LEU ILE GLN LEU GLY ILE THR HIS VAL VAL ASN ALA SEQRES 7 A 205 ALA ALA GLY LYS PHE GLN VAL ASP THR GLY ALA LYS PHE SEQRES 8 A 205 TYR ARG GLY MET SER LEU GLU TYR TYR GLY ILE GLU ALA SEQRES 9 A 205 ASP ASP ASN PRO PHE PHE ASP LEU SER VAL TYR PHE LEU SEQRES 10 A 205 PRO VAL ALA ARG TYR ILE ARG ALA ALA LEU SER VAL PRO SEQRES 11 A 205 GLN GLY ARG VAL LEU VAL HIS CYS ALA MET GLY VAL SER SEQRES 12 A 205 ARG SER ALA THR LEU VAL LEU ALA PHE LEU MET ILE TYR SEQRES 13 A 205 GLU ASN MET THR LEU VAL GLU ALA ILE GLN THR VAL GLN SEQRES 14 A 205 ALA HIS ARG ASN ILE CYS PRO ASN SER GLY PHE LEU ARG SEQRES 15 A 205 GLN LEU GLN VAL LEU ASP ASN ARG LEU GLY ARG GLU THR SEQRES 16 A 205 GLY ARG PHE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 205 MET ASP SER LEU GLN LYS GLN ASP LEU ARG ARG PRO LYS SEQRES 2 B 205 ILE HIS GLY ALA VAL GLN ALA SER PRO TYR GLN PRO PRO SEQRES 3 B 205 THR LEU ALA SER LEU GLN ARG LEU LEU TRP VAL ARG GLN SEQRES 4 B 205 ALA ALA THR LEU ASN HIS ILE ASP GLU VAL TRP PRO SER SEQRES 5 B 205 LEU PHE LEU GLY ASP ALA TYR ALA ALA ARG ASP LYS SER SEQRES 6 B 205 LYS LEU ILE GLN LEU GLY ILE THR HIS VAL VAL ASN ALA SEQRES 7 B 205 ALA ALA GLY LYS PHE GLN VAL ASP THR GLY ALA LYS PHE SEQRES 8 B 205 TYR ARG GLY MET SER LEU GLU TYR TYR GLY ILE GLU ALA SEQRES 9 B 205 ASP ASP ASN PRO PHE PHE ASP LEU SER VAL TYR PHE LEU SEQRES 10 B 205 PRO VAL ALA ARG TYR ILE ARG ALA ALA LEU SER VAL PRO SEQRES 11 B 205 GLN GLY ARG VAL LEU VAL HIS CYS ALA MET GLY VAL SER SEQRES 12 B 205 ARG SER ALA THR LEU VAL LEU ALA PHE LEU MET ILE TYR SEQRES 13 B 205 GLU ASN MET THR LEU VAL GLU ALA ILE GLN THR VAL GLN SEQRES 14 B 205 ALA HIS ARG ASN ILE CYS PRO ASN SER GLY PHE LEU ARG SEQRES 15 B 205 GLN LEU GLN VAL LEU ASP ASN ARG LEU GLY ARG GLU THR SEQRES 16 B 205 GLY ARG PHE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 C 205 MET ASP SER LEU GLN LYS GLN ASP LEU ARG ARG PRO LYS SEQRES 2 C 205 ILE HIS GLY ALA VAL GLN ALA SER PRO TYR GLN PRO PRO SEQRES 3 C 205 THR LEU ALA SER LEU GLN ARG LEU LEU TRP VAL ARG GLN SEQRES 4 C 205 ALA ALA THR LEU ASN HIS ILE ASP GLU VAL TRP PRO SER SEQRES 5 C 205 LEU PHE LEU GLY ASP ALA TYR ALA ALA ARG ASP LYS SER SEQRES 6 C 205 LYS LEU ILE GLN LEU GLY ILE THR HIS VAL VAL ASN ALA SEQRES 7 C 205 ALA ALA GLY LYS PHE GLN VAL ASP THR GLY ALA LYS PHE SEQRES 8 C 205 TYR ARG GLY MET SER LEU GLU TYR TYR GLY ILE GLU ALA SEQRES 9 C 205 ASP ASP ASN PRO PHE PHE ASP LEU SER VAL TYR PHE LEU SEQRES 10 C 205 PRO VAL ALA ARG TYR ILE ARG ALA ALA LEU SER VAL PRO SEQRES 11 C 205 GLN GLY ARG VAL LEU VAL HIS CYS ALA MET GLY VAL SER SEQRES 12 C 205 ARG SER ALA THR LEU VAL LEU ALA PHE LEU MET ILE TYR SEQRES 13 C 205 GLU ASN MET THR LEU VAL GLU ALA ILE GLN THR VAL GLN SEQRES 14 C 205 ALA HIS ARG ASN ILE CYS PRO ASN SER GLY PHE LEU ARG SEQRES 15 C 205 GLN LEU GLN VAL LEU ASP ASN ARG LEU GLY ARG GLU THR SEQRES 16 C 205 GLY ARG PHE ALA HIS HIS HIS HIS HIS HIS SEQRES 1 D 205 MET ASP SER LEU GLN LYS GLN ASP LEU ARG ARG PRO LYS SEQRES 2 D 205 ILE HIS GLY ALA VAL GLN ALA SER PRO TYR GLN PRO PRO SEQRES 3 D 205 THR LEU ALA SER LEU GLN ARG LEU LEU TRP VAL ARG GLN SEQRES 4 D 205 ALA ALA THR LEU ASN HIS ILE ASP GLU VAL TRP PRO SER SEQRES 5 D 205 LEU PHE LEU GLY ASP ALA TYR ALA ALA ARG ASP LYS SER SEQRES 6 D 205 LYS LEU ILE GLN LEU GLY ILE THR HIS VAL VAL ASN ALA SEQRES 7 D 205 ALA ALA GLY LYS PHE GLN VAL ASP THR GLY ALA LYS PHE SEQRES 8 D 205 TYR ARG GLY MET SER LEU GLU TYR TYR GLY ILE GLU ALA SEQRES 9 D 205 ASP ASP ASN PRO PHE PHE ASP LEU SER VAL TYR PHE LEU SEQRES 10 D 205 PRO VAL ALA ARG TYR ILE ARG ALA ALA LEU SER VAL PRO SEQRES 11 D 205 GLN GLY ARG VAL LEU VAL HIS CYS ALA MET GLY VAL SER SEQRES 12 D 205 ARG SER ALA THR LEU VAL LEU ALA PHE LEU MET ILE TYR SEQRES 13 D 205 GLU ASN MET THR LEU VAL GLU ALA ILE GLN THR VAL GLN SEQRES 14 D 205 ALA HIS ARG ASN ILE CYS PRO ASN SER GLY PHE LEU ARG SEQRES 15 D 205 GLN LEU GLN VAL LEU ASP ASN ARG LEU GLY ARG GLU THR SEQRES 16 D 205 GLY ARG PHE ALA HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *92(H2 O) HELIX 1 1 THR A 27 ARG A 38 1 12 HELIX 2 2 ASP A 57 ASP A 63 1 7 HELIX 3 3 ASP A 63 GLY A 71 1 9 HELIX 4 4 THR A 87 TYR A 92 1 6 HELIX 5 5 ASP A 111 VAL A 114 5 4 HELIX 6 6 TYR A 115 SER A 128 1 14 HELIX 7 7 SER A 143 GLU A 157 1 15 HELIX 8 8 THR A 160 GLN A 169 1 10 HELIX 9 9 ASN A 177 ARG A 193 1 17 HELIX 10 10 THR B 27 ARG B 38 1 12 HELIX 11 11 ASP B 57 ASP B 63 1 7 HELIX 12 12 ASP B 63 GLY B 71 1 9 HELIX 13 13 ALA B 89 ARG B 93 5 5 HELIX 14 14 LEU B 112 SER B 128 1 17 HELIX 15 15 SER B 143 GLU B 157 1 15 HELIX 16 16 THR B 160 GLN B 169 1 10 HELIX 17 17 ASN B 177 LEU B 191 1 15 HELIX 18 18 THR C 27 VAL C 37 1 11 HELIX 19 19 ASP C 57 ASP C 63 1 7 HELIX 20 20 ASP C 63 LEU C 70 1 8 HELIX 21 21 THR C 87 ARG C 93 1 7 HELIX 22 22 TYR C 115 VAL C 129 1 15 HELIX 23 23 SER C 143 GLU C 157 1 15 HELIX 24 24 THR C 160 GLN C 169 1 10 HELIX 25 25 ASN C 177 LEU C 191 1 15 HELIX 26 26 THR D 27 VAL D 37 1 11 HELIX 27 27 ASP D 57 ASP D 63 1 7 HELIX 28 28 ASP D 63 GLY D 71 1 9 HELIX 29 29 THR D 87 TYR D 92 1 6 HELIX 30 30 LEU D 112 VAL D 129 1 18 HELIX 31 31 SER D 143 GLU D 157 1 15 HELIX 32 32 THR D 160 GLN D 169 1 10 HELIX 33 33 ASN D 177 LEU D 191 1 15 SHEET 1 A 2 LEU A 43 ASN A 44 0 SHEET 2 A 2 THR D 42 LEU D 43 -1 O LEU D 43 N LEU A 43 SHEET 1 B 5 ILE A 46 TRP A 50 0 SHEET 2 B 5 LEU A 53 GLY A 56 -1 O LEU A 55 N ASP A 47 SHEET 3 B 5 VAL A 134 HIS A 137 1 O VAL A 136 N PHE A 54 SHEET 4 B 5 HIS A 74 ASN A 77 1 N VAL A 76 O LEU A 135 SHEET 5 B 5 GLU A 98 GLY A 101 1 O TYR A 100 N ASN A 77 SHEET 1 C 5 ILE B 46 TRP B 50 0 SHEET 2 C 5 LEU B 53 GLY B 56 -1 O LEU B 53 N TRP B 50 SHEET 3 C 5 VAL B 134 HIS B 137 1 O VAL B 134 N PHE B 54 SHEET 4 C 5 HIS B 74 ASN B 77 1 N VAL B 76 O HIS B 137 SHEET 5 C 5 GLU B 98 GLY B 101 1 O TYR B 100 N ASN B 77 SHEET 1 D 5 ILE C 46 TRP C 50 0 SHEET 2 D 5 LEU C 53 GLY C 56 -1 O LEU C 53 N TRP C 50 SHEET 3 D 5 VAL C 134 HIS C 137 1 O VAL C 136 N PHE C 54 SHEET 4 D 5 HIS C 74 ASN C 77 1 N VAL C 76 O LEU C 135 SHEET 5 D 5 GLU C 98 GLY C 101 1 O TYR C 100 N VAL C 75 SHEET 1 E 5 ILE D 46 TRP D 50 0 SHEET 2 E 5 LEU D 53 GLY D 56 -1 O LEU D 53 N TRP D 50 SHEET 3 E 5 VAL D 134 HIS D 137 1 O VAL D 136 N PHE D 54 SHEET 4 E 5 HIS D 74 ASN D 77 1 N HIS D 74 O LEU D 135 SHEET 5 E 5 GLU D 98 GLY D 101 1 O TYR D 100 N VAL D 75 CRYST1 73.821 73.821 303.803 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013546 0.007821 0.000000 0.00000 SCALE2 0.000000 0.015642 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003292 0.00000