PDB Short entry for 2PX7 HEADER TRANSFERASE 14-MAY-07 2PX7 TITLE CRYSTAL STRUCTURE OF 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE TITLE 2 CYTIDYLYLTRANSFERASE FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 4-DIPHOSPHOCYTIDYL-2C-METHYL-D-ERYTHRITOL SYNTHASE, MEP COMPND 5 CYTIDYLYLTRANSFERASE, MCT; COMPND 6 EC: 2.7.7.60; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB8; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8, DSM 579; SOURCE 5 ATCC: 27634; SOURCE 6 GENE: ISPD, TTHA0171; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS TTHA0171, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE, KEYWDS 2 ISPD_THET8, ISPD, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS, SECSG, KEYWDS 4 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 5 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,M.TSUKUDA,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA,L.- AUTHOR 2 Q.CHEN,Z.-J.LIU,D.LEE,S.-H.CHANG,D.NGUYEN,J.P.ROSE,B.-C.WANG, AUTHOR 3 SOUTHEAST COLLABORATORY FOR STRUCTURAL GENOMICS (SECSG),RIKEN AUTHOR 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 5 30-AUG-23 2PX7 1 SEQADV REVDAT 4 24-JAN-18 2PX7 1 AUTHOR JRNL REVDAT 3 18-OCT-17 2PX7 1 REMARK REVDAT 2 24-FEB-09 2PX7 1 VERSN REVDAT 1 12-JUN-07 2PX7 0 JRNL AUTH L.CHEN,M.TSUKUDA,A.EBIHARA,A.SHINKAI,S.KURAMITSU,S.YOKOYAMA, JRNL AUTH 2 L.-Q.CHEN,Z.-J.LIU,D.LEE,S.-H.CHANG,D.NGUYEN,J.P.ROSE, JRNL AUTH 3 B.-C.WANG JRNL TITL CRYSTAL STRUCTURE OF 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE JRNL TITL 2 CYTIDYLYLTRANSFERASE FROM THERMUS THERMOPHILUS HB8. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 33570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2369 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3006 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.05000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4184 ; 1.467 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 8.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;34.015 ;22.373 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;15.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;20.604 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 496 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2330 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1344 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2056 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.215 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2021 ; 0.775 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3220 ; 1.426 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 2.048 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 964 ; 3.451 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-07. REMARK 100 THE DEPOSITION ID IS D_1000042878. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28600 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1YE7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: USING 2 MICROLITER DROPS CONTAINING REMARK 280 EQUAL VOLUMES OF PROTEIN CONCENTRATE (6.36 MG/ML) AND RESERVOIR REMARK 280 SOLUTION CONTAINING 0.9M LI SULFATE, 0.09M HEPES PH 8.0, 0.01M REMARK 280 BETAINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.92000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.84000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.88000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 ILE A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 TRP A 211 REMARK 465 SER A 212 REMARK 465 ALA A 213 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 ILE B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 ARG B 15 REMARK 465 LEU B 16 REMARK 465 GLY B 17 REMARK 465 ARG B 18 REMARK 465 GLY B 19 REMARK 465 TRP B 211 REMARK 465 SER B 212 REMARK 465 ALA B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 131 O TYR A 132 1.72 REMARK 500 OD2 ASP A 90 NH1 ARG A 93 1.97 REMARK 500 O GLU A 128 N GLU A 130 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 64 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 2 -115.72 -112.09 REMARK 500 VAL A 3 -128.08 -164.64 REMARK 500 ALA A 9 56.22 -96.38 REMARK 500 ARG A 93 76.85 -111.06 REMARK 500 PHE A 95 63.68 -100.34 REMARK 500 GLU A 130 -83.31 -28.49 REMARK 500 ALA A 131 -125.24 -101.81 REMARK 500 TYR A 132 -130.14 -48.57 REMARK 500 GLN A 145 -169.33 -115.12 REMARK 500 ALA A 192 36.75 -81.50 REMARK 500 GLU B 2 83.90 75.56 REMARK 500 VAL B 3 96.15 109.93 REMARK 500 ALA B 9 42.29 -82.69 REMARK 500 ALA B 10 -58.10 -127.35 REMARK 500 ARG B 93 73.48 -111.13 REMARK 500 TYR B 132 -74.34 -38.96 REMARK 500 GLN B 145 -146.58 -111.19 REMARK 500 THR B 146 130.15 167.49 REMARK 500 ALA B 192 35.43 -89.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 2 VAL B 3 -50.24 REMARK 500 GLN B 145 THR B 146 -121.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003000235.1 RELATED DB: TARGETDB REMARK 900 RIKEN TARGETDB DBREF 2PX7 A 1 213 UNP Q5SLX2 ISPD_THET8 1 213 DBREF 2PX7 B 1 213 UNP Q5SLX2 ISPD_THET8 1 213 SEQADV 2PX7 MET A -22 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 GLY A -21 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -20 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -19 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -18 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -17 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -16 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -15 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -14 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -13 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -12 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -11 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 SER A -10 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 SER A -9 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 GLY A -8 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A -7 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ILE A -6 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP A -5 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP A -4 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP A -3 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP A -2 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 LYS A -1 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS A 0 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 MET B -22 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 GLY B -21 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -20 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -19 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -18 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -17 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -16 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -15 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -14 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -13 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -12 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -11 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 SER B -10 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 SER B -9 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 GLY B -8 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B -7 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ILE B -6 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP B -5 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP B -4 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP B -3 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 ASP B -2 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 LYS B -1 UNP Q5SLX2 CLONING ARTIFACT SEQADV 2PX7 HIS B 0 UNP Q5SLX2 CLONING ARTIFACT SEQRES 1 A 236 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 236 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLU VAL SEQRES 3 A 236 SER VAL LEU ILE PRO ALA ALA GLY ASN GLY LEU ARG LEU SEQRES 4 A 236 GLY ARG GLY PRO LYS ALA PHE LEU GLN VAL GLY GLY ARG SEQRES 5 A 236 THR LEU LEU GLU TRP THR LEU ALA ALA PHE ARG ASP ALA SEQRES 6 A 236 ALA GLU VAL LEU VAL ALA LEU PRO PRO GLY ALA GLU PRO SEQRES 7 A 236 PRO LYS GLY LEU GLY ALA VAL PHE LEU GLU GLY GLY ALA SEQRES 8 A 236 THR ARG GLN ALA SER VAL ALA ARG LEU LEU GLU ALA ALA SEQRES 9 A 236 SER LEU PRO LEU VAL LEU VAL HIS ASP VAL ALA ARG PRO SEQRES 10 A 236 PHE VAL SER ARG GLY LEU VAL ALA ARG VAL LEU GLU ALA SEQRES 11 A 236 ALA GLN ARG SER GLY ALA ALA VAL PRO VAL LEU PRO VAL SEQRES 12 A 236 PRO ASP THR LEU MET ALA PRO GLU GLY GLU ALA TYR GLY SEQRES 13 A 236 ARG VAL VAL PRO ARG GLU ALA PHE ARG LEU VAL GLN THR SEQRES 14 A 236 PRO GLN GLY PHE PHE THR ALA LEU LEU ARG GLU ALA HIS SEQRES 15 A 236 ALA TYR ALA ARG ARG LYS GLY LEU GLU ALA SER ASP ASP SEQRES 16 A 236 ALA GLN LEU VAL GLN ALA LEU GLY TYR PRO VAL ALA LEU SEQRES 17 A 236 VAL GLU GLY GLU ALA THR ALA PHE LYS ILE THR HIS PRO SEQRES 18 A 236 GLN ASP LEU VAL LEU ALA GLU ALA LEU ALA ARG VAL TRP SEQRES 19 A 236 SER ALA SEQRES 1 B 236 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 236 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLU VAL SEQRES 3 B 236 SER VAL LEU ILE PRO ALA ALA GLY ASN GLY LEU ARG LEU SEQRES 4 B 236 GLY ARG GLY PRO LYS ALA PHE LEU GLN VAL GLY GLY ARG SEQRES 5 B 236 THR LEU LEU GLU TRP THR LEU ALA ALA PHE ARG ASP ALA SEQRES 6 B 236 ALA GLU VAL LEU VAL ALA LEU PRO PRO GLY ALA GLU PRO SEQRES 7 B 236 PRO LYS GLY LEU GLY ALA VAL PHE LEU GLU GLY GLY ALA SEQRES 8 B 236 THR ARG GLN ALA SER VAL ALA ARG LEU LEU GLU ALA ALA SEQRES 9 B 236 SER LEU PRO LEU VAL LEU VAL HIS ASP VAL ALA ARG PRO SEQRES 10 B 236 PHE VAL SER ARG GLY LEU VAL ALA ARG VAL LEU GLU ALA SEQRES 11 B 236 ALA GLN ARG SER GLY ALA ALA VAL PRO VAL LEU PRO VAL SEQRES 12 B 236 PRO ASP THR LEU MET ALA PRO GLU GLY GLU ALA TYR GLY SEQRES 13 B 236 ARG VAL VAL PRO ARG GLU ALA PHE ARG LEU VAL GLN THR SEQRES 14 B 236 PRO GLN GLY PHE PHE THR ALA LEU LEU ARG GLU ALA HIS SEQRES 15 B 236 ALA TYR ALA ARG ARG LYS GLY LEU GLU ALA SER ASP ASP SEQRES 16 B 236 ALA GLN LEU VAL GLN ALA LEU GLY TYR PRO VAL ALA LEU SEQRES 17 B 236 VAL GLU GLY GLU ALA THR ALA PHE LYS ILE THR HIS PRO SEQRES 18 B 236 GLN ASP LEU VAL LEU ALA GLU ALA LEU ALA ARG VAL TRP SEQRES 19 B 236 SER ALA FORMUL 3 HOH *160(H2 O) HELIX 1 1 PRO A 20 LEU A 24 5 5 HELIX 2 2 THR A 30 PHE A 39 1 10 HELIX 3 3 THR A 69 ALA A 81 1 13 HELIX 4 4 SER A 97 GLY A 112 1 16 HELIX 5 5 PRO A 137 ALA A 140 5 4 HELIX 6 6 THR A 152 GLY A 166 1 15 HELIX 7 7 ASP A 171 LEU A 179 1 9 HELIX 8 8 HIS A 197 ARG A 209 1 13 HELIX 9 9 PRO B 20 PHE B 23 5 4 HELIX 10 10 LEU B 31 PHE B 39 1 9 HELIX 11 11 THR B 69 ALA B 81 1 13 HELIX 12 12 SER B 97 GLY B 112 1 16 HELIX 13 13 PRO B 137 ALA B 140 5 4 HELIX 14 14 THR B 152 GLY B 166 1 15 HELIX 15 15 ASP B 171 ALA B 178 1 8 HELIX 16 16 GLU B 189 PHE B 193 5 5 HELIX 17 17 HIS B 197 ARG B 209 1 13 SHEET 1 A 7 VAL A 62 GLU A 65 0 SHEET 2 A 7 GLU A 44 LEU A 49 1 N VAL A 47 O VAL A 62 SHEET 3 A 7 SER A 4 PRO A 8 1 N VAL A 5 O GLU A 44 SHEET 4 A 7 LEU A 85 VAL A 88 1 O LEU A 87 N LEU A 6 SHEET 5 A 7 GLN A 148 PHE A 151 -1 O PHE A 150 N VAL A 86 SHEET 6 A 7 ALA A 113 PRO A 119 -1 N ALA A 114 O GLY A 149 SHEET 7 A 7 ALA A 184 GLU A 187 1 O VAL A 186 N VAL A 115 SHEET 1 B 9 VAL A 62 GLU A 65 0 SHEET 2 B 9 GLU A 44 LEU A 49 1 N VAL A 47 O VAL A 62 SHEET 3 B 9 SER A 4 PRO A 8 1 N VAL A 5 O GLU A 44 SHEET 4 B 9 LEU A 85 VAL A 88 1 O LEU A 87 N LEU A 6 SHEET 5 B 9 GLN A 148 PHE A 151 -1 O PHE A 150 N VAL A 86 SHEET 6 B 9 ALA A 113 PRO A 119 -1 N ALA A 114 O GLY A 149 SHEET 7 B 9 ARG A 142 VAL A 144 -1 O LEU A 143 N LEU A 118 SHEET 8 B 9 THR B 123 GLU B 128 -1 O MET B 125 N ARG A 142 SHEET 9 B 9 ALA B 131 VAL B 136 -1 O ARG B 134 N ALA B 126 SHEET 1 C 9 GLY A 133 VAL A 136 0 SHEET 2 C 9 THR A 123 PRO A 127 -1 N ALA A 126 O ARG A 134 SHEET 3 C 9 ARG B 142 VAL B 144 -1 O VAL B 144 N THR A 123 SHEET 4 C 9 ALA B 113 PRO B 119 -1 N LEU B 118 O LEU B 143 SHEET 5 C 9 GLN B 148 PHE B 151 -1 O GLY B 149 N ALA B 114 SHEET 6 C 9 LEU B 85 VAL B 88 -1 N VAL B 88 O GLN B 148 SHEET 7 C 9 SER B 4 ILE B 7 1 N LEU B 6 O LEU B 87 SHEET 8 C 9 GLU B 44 LEU B 49 1 O LEU B 46 N VAL B 5 SHEET 9 C 9 VAL B 62 GLU B 65 1 O VAL B 62 N VAL B 47 SHEET 1 D 5 GLY A 133 VAL A 136 0 SHEET 2 D 5 THR A 123 PRO A 127 -1 N ALA A 126 O ARG A 134 SHEET 3 D 5 ARG B 142 VAL B 144 -1 O VAL B 144 N THR A 123 SHEET 4 D 5 ALA B 113 PRO B 119 -1 N LEU B 118 O LEU B 143 SHEET 5 D 5 ALA B 184 GLU B 187 1 O ALA B 184 N ALA B 113 SHEET 1 E 2 GLN B 25 VAL B 26 0 SHEET 2 E 2 ARG B 29 THR B 30 -1 O ARG B 29 N VAL B 26 CISPEP 1 GLU A 130 ALA A 131 0 0.60 CISPEP 2 ALA A 131 TYR A 132 0 -5.52 CISPEP 3 THR A 146 PRO A 147 0 5.30 CISPEP 4 THR B 146 PRO B 147 0 6.83 CRYST1 104.084 104.084 107.760 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009608 0.005547 0.000000 0.00000 SCALE2 0.000000 0.011094 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009280 0.00000