PDB Short entry for 2PYF HEADER IMMUNE SYSTEM 16-MAY-07 2PYF TITLE CRYSTAL STRUCTURES OF HIGH AFFINITY HUMAN T-CELL RECEPTORS BOUND TO TITLE 2 PMHC REVEALNATIVE DIAGONAL BINDING GEOMETRY UNBOUND TCR CLONE 5-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL RECEPTOR, ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T-CELL RECEPTOR, BETA CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGMT7 KEYWDS T-CELL RECEPTOR, CDR3, PHAGE DISPLAY, MUTANT, HIGH AFFINITY, NY-ESO- KEYWDS 2 1, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.SAMI,P.J.RIZKALLAH,S.DUNN,Y.LI,R.MOYSEY,A.VUIDEPOT,E.BASTON, AUTHOR 2 P.TODOROV,P.MOLLOY,F.GAO,J.M.BOULTER,B.K.JAKOBSEN REVDAT 4 30-AUG-23 2PYF 1 REMARK REVDAT 3 13-JUL-11 2PYF 1 VERSN REVDAT 2 24-FEB-09 2PYF 1 VERSN REVDAT 1 25-SEP-07 2PYF 0 JRNL AUTH M.SAMI,P.J.RIZKALLAH,S.DUNN,P.MOLLOY,R.MOYSEY,A.VUIDEPOT, JRNL AUTH 2 E.BASTON,P.TODOROV,L.YI,F.GAO,J.M.BOULTER,B.K.JAKOBSEN JRNL TITL CRYSTAL STRUCTURES OF HIGH AFFINITY HUMAN T-CELL RECEPTORS JRNL TITL 2 BOUND TO PEPTIDE MAJOR HISTOCOMPATIBILITY COMPLEX REVEAL JRNL TITL 3 NATIVE DIAGONAL BINDING GEOMETRY JRNL REF PROTEIN ENG.DES.SEL. V. 20 397 2007 JRNL REFN ISSN 1741-0126 JRNL PMID 17644531 JRNL DOI 10.1093/PROTEIN/GZM033 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19532 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1064 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1332 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.33 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : -0.46000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.426 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3648 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2457 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4953 ; 1.253 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5977 ; 0.722 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 1.269 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;16.478 ;24.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ; 5.800 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ; 4.772 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 533 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4040 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 719 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 768 ; 0.204 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2694 ; 0.215 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1680 ; 0.182 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1767 ; 0.093 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 262 ; 0.209 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 5 ; 0.075 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.206 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.190 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.265 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2335 ; 2.771 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 892 ; 0.668 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3619 ; 4.102 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1548 ; 5.795 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1334 ; 7.772 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): -15.8073 1.6975 7.4530 REMARK 3 T TENSOR REMARK 3 T11: -0.1629 T22: 0.0755 REMARK 3 T33: -0.1277 T12: 0.0051 REMARK 3 T13: -0.0309 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.4864 L22: 3.5649 REMARK 3 L33: 3.0213 L12: 0.4460 REMARK 3 L13: -0.9884 L23: -1.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.6428 S13: -0.0277 REMARK 3 S21: -0.1065 S22: 0.1934 S23: 0.3598 REMARK 3 S31: -0.1930 S32: -0.4267 S33: -0.2073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8308 -15.3188 33.5713 REMARK 3 T TENSOR REMARK 3 T11: -0.1284 T22: -0.0979 REMARK 3 T33: -0.0854 T12: -0.0163 REMARK 3 T13: 0.0357 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.5895 L22: 5.1626 REMARK 3 L33: 3.6532 L12: 0.7303 REMARK 3 L13: -0.4851 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: 0.1205 S12: -0.3988 S13: -0.0229 REMARK 3 S21: 0.1008 S22: -0.0790 S23: -0.0479 REMARK 3 S31: -0.1916 S32: 0.0242 S33: -0.0415 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 0.8296 16.4353 9.7467 REMARK 3 T TENSOR REMARK 3 T11: -0.0588 T22: -0.0961 REMARK 3 T33: -0.0719 T12: 0.0140 REMARK 3 T13: 0.0417 T23: 0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.2285 L22: 2.5110 REMARK 3 L33: 5.4619 L12: -0.2878 REMARK 3 L13: 1.4051 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.1259 S13: -0.0227 REMARK 3 S21: -0.0145 S22: 0.2579 S23: 0.0994 REMARK 3 S31: -0.6028 S32: -0.0055 S33: -0.1999 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 120 B 241 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4177 -7.7958 26.0383 REMARK 3 T TENSOR REMARK 3 T11: -0.1189 T22: -0.0577 REMARK 3 T33: -0.0925 T12: 0.0054 REMARK 3 T13: -0.0431 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 2.1004 L22: 1.9398 REMARK 3 L33: 1.7548 L12: -0.1024 REMARK 3 L13: -1.1275 L23: -0.3999 REMARK 3 S TENSOR REMARK 3 S11: 0.0337 S12: -0.0817 S13: 0.0536 REMARK 3 S21: 0.1063 S22: 0.0074 S23: -0.1200 REMARK 3 S31: -0.1067 S32: 0.1290 S33: -0.0411 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042922. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : SI (III) REMARK 200 OPTICS : MIRROR + MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20741 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2BNR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 85 MM NA HEPES BUFFER PH7.5, 8.5 % ISO REMARK 280 -PROPANOL, 17% PEG 4000, 15% GLYCEROL, PH 7.50, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.90250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 54 -36.42 -139.32 REMARK 500 ARG A 55 -62.54 80.46 REMARK 500 SER A 59 67.98 -160.33 REMARK 500 ALA A 79 70.81 33.27 REMARK 500 ALA A 86 178.66 176.21 REMARK 500 ASP A 97 146.07 100.90 REMARK 500 SER A 131 66.19 64.46 REMARK 500 ASP A 133 -4.69 75.67 REMARK 500 LYS A 152 55.28 -107.48 REMARK 500 ASN A 181 35.22 -84.69 REMARK 500 ASP A 184 75.14 59.67 REMARK 500 ASN A 192 72.36 -65.31 REMARK 500 ASN A 192 73.21 -65.31 REMARK 500 ASN A 193 -121.26 -130.63 REMARK 500 ASN A 193 -119.15 -132.21 REMARK 500 PHE A 201 70.05 -119.33 REMARK 500 MET B 39 0.90 -150.36 REMARK 500 ILE B 44 -61.59 -93.23 REMARK 500 PHE B 72 83.34 -157.38 REMARK 500 SER B 85 -172.66 -171.90 REMARK 500 ASN B 96 129.51 -33.36 REMARK 500 THR B 97 -29.97 147.37 REMARK 500 HIS B 151 79.19 -114.52 REMARK 500 TRP B 220 106.12 -163.36 REMARK 500 THR B 221 65.80 -114.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F53 RELATED DB: PDB REMARK 900 RELATED ID: 2F54 RELATED DB: PDB REMARK 900 RELATED ID: 2P5E RELATED DB: PDB REMARK 900 RELATED ID: 2P5W RELATED DB: PDB REMARK 900 RELATED ID: 2PYE RELATED DB: PDB REMARK 900 RELATED ID: 2BNR RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE DATABASE REFERENCE WAS FOUND FOR CHAINS REMARK 999 A AND B AT TIME OF PROCESSING DBREF 2PYF A 4 197 UNP Q6PIZ8 Q6PIZ8_HUMAN 25 215 DBREF 2PYF B 101 241 UNP Q6NS87 Q6NS87_HUMAN 126 266 SEQRES 1 A 205 LYS GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER VAL SEQRES 2 A 205 PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE THR SEQRES 3 A 205 ASP SER ALA ILE TYR ASN LEU GLN TRP PHE ARG GLN ASP SEQRES 4 A 205 PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SER SEQRES 5 A 205 SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SER SEQRES 6 A 205 LEU ASP LYS SER SER GLY SER SER THR LEU TYR ILE ALA SEQRES 7 A 205 ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS ALA SEQRES 8 A 205 VAL ARG PRO LEU LEU ASP GLY THR TYR ILE PRO THR PHE SEQRES 9 A 205 GLY ARG GLY THR SER LEU ILE VAL HIS PRO TYR ILE GLN SEQRES 10 A 205 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 A 205 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 A 205 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 A 205 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 A 205 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 A 205 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 A 205 ILE PRO ASP THR PHE PHE PRO SER PRO GLU SEQRES 1 B 241 GLY VAL THR GLN THR PRO LYS PHE GLN VAL LEU LYS THR SEQRES 2 B 241 GLY GLN SER MET THR LEU GLN CYS ALA GLN ASP MET ASN SEQRES 3 B 241 HIS GLU TYR MET SER TRP TYR ARG GLN ASP PRO GLY MET SEQRES 4 B 241 GLY LEU ARG LEU ILE HIS TYR SER VAL GLY ALA GLY THR SEQRES 5 B 241 THR ASP GLN GLY GLU VAL PRO ASN GLY TYR ASN VAL SER SEQRES 6 B 241 ARG SER THR ILE GLU ASP PHE PRO LEU ARG LEU LEU SER SEQRES 7 B 241 ALA ALA PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 B 241 SER TYR LEU GLY ASN THR GLY GLU LEU PHE PHE GLY GLU SEQRES 9 B 241 GLY SER ARG LEU THR VAL LEU GLU ASP LEU LYS ASN VAL SEQRES 10 B 241 PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA SEQRES 11 B 241 GLU ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU SEQRES 12 B 241 ALA THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP SEQRES 13 B 241 TRP VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR SEQRES 14 B 241 ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SEQRES 15 B 241 SER ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA SEQRES 16 B 241 THR PHE TRP GLN ASP PRO ARG ASN HIS PHE ARG CYS GLN SEQRES 17 B 241 VAL GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR SEQRES 18 B 241 GLN ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA SEQRES 19 B 241 GLU ALA TRP GLY ARG ALA ASP HET SO4 A 206 5 HET SO4 A 207 5 HET PG4 A 303 13 HET PGE A 304 10 HET PGE A 305 10 HET SO4 B 242 5 HET SO4 B 243 5 HET SO4 B 244 5 HET SO4 B 245 5 HET PGE B 301 10 HET PGE B 302 10 HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 5 PG4 C8 H18 O5 FORMUL 6 PGE 4(C6 H14 O4) FORMUL 14 HOH *160(H2 O) HELIX 1 1 GLN A 81 SER A 85 5 5 HELIX 2 2 ARG A 167 ASP A 170 5 4 HELIX 3 3 ALA A 186 ASN A 192 5 7 HELIX 4 4 ALA B 80 THR B 84 5 5 HELIX 5 5 ASP B 113 VAL B 117 5 5 HELIX 6 6 SER B 128 GLN B 136 1 9 HELIX 7 7 ALA B 195 ASP B 200 1 6 SHEET 1 A 5 VAL A 4 ILE A 7 0 SHEET 2 A 5 LEU A 19 PHE A 25 -1 O SER A 24 N THR A 5 SHEET 3 A 5 SER A 72 ILE A 77 -1 O SER A 73 N CYS A 23 SHEET 4 A 5 LEU A 62 ASP A 67 -1 N ASN A 63 O TYR A 76 SHEET 5 A 5 GLU A 56 SER A 59 -1 N GLN A 57 O ALA A 64 SHEET 1 B 5 ALA A 10 PRO A 14 0 SHEET 2 B 5 THR A 108 HIS A 113 1 O SER A 109 N LEU A 11 SHEET 3 B 5 ALA A 86 PRO A 94 -1 N TYR A 88 O THR A 108 SHEET 4 B 5 ILE A 30 GLN A 38 -1 N TYR A 31 O ARG A 93 SHEET 5 B 5 LEU A 44 GLN A 51 -1 O THR A 45 N ARG A 37 SHEET 1 C 4 ALA A 10 PRO A 14 0 SHEET 2 C 4 THR A 108 HIS A 113 1 O SER A 109 N LEU A 11 SHEET 3 C 4 ALA A 86 PRO A 94 -1 N TYR A 88 O THR A 108 SHEET 4 C 4 THR A 103 PHE A 104 -1 O THR A 103 N VAL A 92 SHEET 1 D 8 VAL A 156 ILE A 158 0 SHEET 2 D 8 PHE A 171 SER A 180 -1 O TRP A 179 N TYR A 157 SHEET 3 D 8 SER A 135 THR A 140 -1 N CYS A 137 O ALA A 178 SHEET 4 D 8 ALA A 122 ASP A 128 -1 N TYR A 124 O LEU A 138 SHEET 5 D 8 GLU B 121 GLU B 126 -1 O GLU B 126 N ARG A 127 SHEET 6 D 8 LYS B 137 PHE B 147 -1 O VAL B 141 N PHE B 125 SHEET 7 D 8 TYR B 185 SER B 194 -1 O LEU B 191 N LEU B 140 SHEET 8 D 8 VAL B 167 THR B 169 -1 N CYS B 168 O ARG B 190 SHEET 1 E 8 CYS A 162 MET A 166 0 SHEET 2 E 8 PHE A 171 SER A 180 -1 O PHE A 171 N MET A 166 SHEET 3 E 8 SER A 135 THR A 140 -1 N CYS A 137 O ALA A 178 SHEET 4 E 8 ALA A 122 ASP A 128 -1 N TYR A 124 O LEU A 138 SHEET 5 E 8 GLU B 121 GLU B 126 -1 O GLU B 126 N ARG A 127 SHEET 6 E 8 LYS B 137 PHE B 147 -1 O VAL B 141 N PHE B 125 SHEET 7 E 8 TYR B 185 SER B 194 -1 O LEU B 191 N LEU B 140 SHEET 8 E 8 LEU B 174 LYS B 175 -1 N LEU B 174 O ALA B 186 SHEET 1 F 4 VAL B 2 THR B 5 0 SHEET 2 F 4 MET B 17 GLN B 23 -1 O GLN B 20 N THR B 5 SHEET 3 F 4 LEU B 74 LEU B 76 -1 O LEU B 74 N LEU B 19 SHEET 4 F 4 ASN B 63 VAL B 64 -1 N ASN B 63 O ARG B 75 SHEET 1 G 6 PHE B 8 LYS B 12 0 SHEET 2 G 6 SER B 106 LEU B 111 1 O LEU B 111 N LEU B 11 SHEET 3 G 6 SER B 85 SER B 92 -1 N TYR B 87 O SER B 106 SHEET 4 G 6 TYR B 29 ASP B 36 -1 N TYR B 33 O PHE B 88 SHEET 5 G 6 GLY B 40 GLY B 49 -1 O ILE B 44 N TRP B 32 SHEET 6 G 6 THR B 52 GLN B 55 -1 O ASP B 54 N TYR B 46 SHEET 1 H 4 PHE B 8 LYS B 12 0 SHEET 2 H 4 SER B 106 LEU B 111 1 O LEU B 111 N LEU B 11 SHEET 3 H 4 SER B 85 SER B 92 -1 N TYR B 87 O SER B 106 SHEET 4 H 4 PHE B 101 PHE B 102 -1 O PHE B 101 N SER B 91 SHEET 1 I 4 LYS B 161 VAL B 163 0 SHEET 2 I 4 VAL B 152 VAL B 158 -1 N VAL B 158 O LYS B 161 SHEET 3 I 4 HIS B 204 PHE B 211 -1 O GLN B 210 N GLU B 153 SHEET 4 I 4 GLN B 230 TRP B 237 -1 O GLN B 230 N PHE B 211 SSBOND 1 CYS A 23 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 137 CYS A 187 1555 1555 2.04 SSBOND 3 CYS A 162 CYS B 168 1555 1555 2.12 SSBOND 4 CYS B 21 CYS B 89 1555 1555 1.97 SSBOND 5 CYS B 142 CYS B 207 1555 1555 2.02 CISPEP 1 ILE A 7 PRO A 8 0 -0.25 CISPEP 2 THR B 5 PRO B 6 0 -0.55 CISPEP 3 TYR B 148 PRO B 149 0 0.16 CRYST1 42.964 59.805 81.799 90.00 90.94 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023275 0.000000 0.000382 0.00000 SCALE2 0.000000 0.016721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012227 0.00000