PDB Short entry for 2PYJ HEADER REPLICATION, TRANSFERASE/DNA 16-MAY-07 2PYJ TITLE PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE DNA AND INCOMING TITLE 2 NUCLEOTIDE SUBSTRATES (TERNARY COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(GACTGCTTA(DOC)-3'; COMPND 3 CHAIN: X, Q, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(ACACGTAAGCAGTC)-3'; COMPND 7 CHAIN: Y, R, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA POLYMERASE; COMPND 11 CHAIN: A, B; COMPND 12 SYNONYM: EARLY PROTEIN GP2; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI29; SOURCE 7 ORGANISM_TAXID: 10756; SOURCE 8 GENE: 2, GP2; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-DNA COMPLEX, REPLICATION, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.BERMAN,S.KAMTEKAR,J.L.GOODMAN,J.M.LAZARO,M.DE VEGA,L.BLANCO, AUTHOR 2 M.SALAS,T.A.STEITZ REVDAT 6 30-AUG-23 2PYJ 1 REMARK REVDAT 5 20-OCT-21 2PYJ 1 REMARK SEQADV LINK REVDAT 4 15-APR-20 2PYJ 1 REMARK LINK REVDAT 3 24-FEB-09 2PYJ 1 VERSN REVDAT 2 07-AUG-07 2PYJ 1 JRNL REVDAT 1 17-JUL-07 2PYJ 0 JRNL AUTH A.J.BERMAN,S.KAMTEKAR,J.L.GOODMAN,J.M.LAZARO,M.DE VEGA, JRNL AUTH 2 L.BLANCO,M.SALAS,T.A.STEITZ JRNL TITL STRUCTURES OF PHI29 DNA POLYMERASE COMPLEXED WITH SUBSTRATE: JRNL TITL 2 THE MECHANISM OF TRANSLOCATION IN B-FAMILY POLYMERASES JRNL REF EMBO J. V. 26 3494 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17611604 JRNL DOI 10.1038/SJ.EMBOJ.7601780 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 102064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 295 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9317 REMARK 3 NUCLEIC ACID ATOMS : 1431 REMARK 3 HETEROGEN ATOMS : 230 REMARK 3 SOLVENT ATOMS : 969 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.068 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11424 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 7624 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15620 ; 1.171 ; 2.136 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18575 ; 2.205 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1153 ; 6.272 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 432 ;34.566 ;24.028 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1768 ;13.753 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;10.536 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1662 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11257 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2184 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1940 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7464 ; 0.215 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4966 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 5164 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 951 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.111 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.119 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 63 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 28 ; 0.107 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7542 ; 1.982 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2325 ; 0.184 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9219 ; 2.034 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7488 ; 1.905 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6392 ; 2.048 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2PYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000042926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 107450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: COPY C OF 1XHX WITHOUT RESIDUES 359-394 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 200 MM AMMONIUM REMARK 280 ACETATE, 15% PEG 4000, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.33350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, Y, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Q, R, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: K, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA R 3 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ASP A 510 REMARK 465 GLY A 511 REMARK 465 LYS A 512 REMARK 465 LEU A 513 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 510 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA Q 9 C5 DA Q 9 N7 -0.037 REMARK 500 DA J 9 O3' DA J 9 C3' -0.063 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA X 2 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DC X 3 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG X 5 O4' - C1' - N9 ANGL. DEV. = 7.9 DEGREES REMARK 500 DC X 6 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA X 9 C3' - O3' - P ANGL. DEV. = 12.0 DEGREES REMARK 500 DA Y 3 C5' - C4' - O4' ANGL. DEV. = 9.9 DEGREES REMARK 500 DC Y 6 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG Y 7 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA Y 10 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA Y 13 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG Q 5 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT Q 7 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT Q 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA Q 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA Q 9 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DC R 6 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG R 7 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT R 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA R 10 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG R 11 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA K 4 C5' - C4' - O4' ANGL. DEV. = 8.4 DEGREES REMARK 500 DC K 5 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC K 7 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG K 15 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT K 16 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC K 17 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG J 1 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J 4 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DG J 5 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC J 6 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA J 9 C3' - O3' - P ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 93.86 -160.88 REMARK 500 ASN A 62 68.41 79.36 REMARK 500 THR A 203 146.11 80.08 REMARK 500 SER A 349 -179.97 -174.68 REMARK 500 VAL A 425 -88.81 -83.20 REMARK 500 TYR A 426 84.28 -156.05 REMARK 500 THR A 457 -56.84 77.33 REMARK 500 ASP A 458 25.32 -147.27 REMARK 500 LYS A 478 -40.23 -131.57 REMARK 500 ARG A 496 -175.19 -173.72 REMARK 500 MET A 554 19.44 -144.68 REMARK 500 ASP B 21 59.69 -146.41 REMARK 500 ASN B 62 67.96 78.93 REMARK 500 HIS B 149 47.53 -100.30 REMARK 500 THR B 203 138.82 78.29 REMARK 500 SER B 252 70.37 52.64 REMARK 500 ILE B 348 -60.83 -90.10 REMARK 500 VAL B 425 -85.11 -85.40 REMARK 500 TYR B 426 86.76 -157.02 REMARK 500 THR B 457 -58.14 79.61 REMARK 500 ASP B 458 23.55 -142.03 REMARK 500 ARG B 496 -175.17 -173.98 REMARK 500 ASP B 520 88.32 -154.11 REMARK 500 ARG B 552 -152.49 -142.11 REMARK 500 LYS B 553 -118.63 -123.03 REMARK 500 ASP B 570 -135.15 -118.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 552 LYS B 553 -147.52 REMARK 500 LYS B 555 PRO B 556 -143.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A9003 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 249 OD2 REMARK 620 2 VAL A 250 O 89.8 REMARK 620 3 ASP A 458 OD1 94.5 92.8 REMARK 620 4 DGT A1588 O3G 90.5 90.8 173.8 REMARK 620 5 DGT A1588 O2B 175.9 93.3 88.2 86.6 REMARK 620 6 DGT A1588 O2A 95.2 174.2 83.8 92.2 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A9004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 249 OD1 REMARK 620 2 ASP A 249 OD2 47.5 REMARK 620 3 ASP A 458 OD2 101.1 88.5 REMARK 620 4 DGT A1588 O2A 111.2 66.1 92.1 REMARK 620 5 HOH A9158 O 82.5 126.7 83.7 166.2 REMARK 620 6 HOH A9326 O 89.8 97.6 168.9 82.0 99.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B9001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 249 OD1 REMARK 620 2 VAL B 250 O 81.1 REMARK 620 3 ASP B 458 OD2 102.7 99.2 REMARK 620 4 DGT B1589 O3G 86.6 92.4 166.0 REMARK 620 5 DGT B1589 O2B 166.3 89.7 88.7 83.7 REMARK 620 6 DGT B1589 O2A 101.5 176.8 82.1 85.9 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B9002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 249 OD2 REMARK 620 2 ASP B 458 OD1 95.4 REMARK 620 3 DGT B1589 O2A 93.5 81.3 REMARK 620 4 HOH B9084 O 99.6 88.8 164.2 REMARK 620 5 HOH B9130 O 93.2 165.5 86.6 101.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 1588 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1589 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2762 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2763 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2764 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO K 2765 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO K 2766 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO K 2767 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2769 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2770 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2771 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO Y 2772 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2773 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2774 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2775 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2776 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2777 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2778 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2779 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2780 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2781 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 2782 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2784 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO Q 2785 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2786 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2787 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO Y 2788 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2789 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2790 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2791 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2792 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2793 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2794 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2795 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO R 2796 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2797 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO X 2798 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2800 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2801 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2802 REMARK 800 REMARK 800 SITE_IDENTIFIER: EC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2803 REMARK 800 REMARK 800 SITE_IDENTIFIER: FC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2804 REMARK 800 REMARK 800 SITE_IDENTIFIER: FC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2805 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2PY5 RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH SINGLE-STRANDED DNA REMARK 900 RELATED ID: 2PYL RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE AND INCOMING REMARK 900 NUCLEOTIDE SUBSTRATES (PRE-TRANSLOCATED TERNARY COMPLEX) REMARK 900 RELATED ID: 2PZS RELATED DB: PDB REMARK 900 PHI29 DNA POLYMERASE COMPLEXED WITH PRIMER-TEMPLATE AND INCOMING REMARK 900 NUCLEOTIDE SUBSTRATES (PRE-TRANSLOCATED TERNARY COMPLEX) DBREF 2PYJ A 1 575 UNP P03680 DPOL_BPPH2 1 575 DBREF 2PYJ B 1 575 UNP P03680 DPOL_BPPH2 1 575 DBREF 2PYJ X 1 10 PDB 2PYJ 2PYJ 1 10 DBREF 2PYJ Y 3 16 PDB 2PYJ 2PYJ 3 16 DBREF 2PYJ Q 1 10 PDB 2PYJ 2PYJ 1 10 DBREF 2PYJ R 3 16 PDB 2PYJ 2PYJ 3 16 DBREF 2PYJ K 4 17 PDB 2PYJ 2PYJ 4 17 DBREF 2PYJ J 1 10 PDB 2PYJ 2PYJ 1 10 SEQADV 2PYJ ALA A 12 UNP P03680 ASP 12 ENGINEERED MUTATION SEQADV 2PYJ ALA A 66 UNP P03680 ASP 66 ENGINEERED MUTATION SEQADV 2PYJ ALA B 12 UNP P03680 ASP 12 ENGINEERED MUTATION SEQADV 2PYJ ALA B 66 UNP P03680 ASP 66 ENGINEERED MUTATION SEQRES 1 X 10 DG DA DC DT DG DC DT DT DA DOC SEQRES 1 Y 14 DA DC DA DC DG DT DA DA DG DC DA DG DT SEQRES 2 Y 14 DC SEQRES 1 Q 10 DG DA DC DT DG DC DT DT DA DOC SEQRES 1 R 14 DA DC DA DC DG DT DA DA DG DC DA DG DT SEQRES 2 R 14 DC SEQRES 1 K 14 DA DC DA DC DG DT DA DA DG DC DA DG DT SEQRES 2 K 14 DC SEQRES 1 J 10 DG DA DC DT DG DC DT DT DA DOC SEQRES 1 A 575 MET LYS HIS MET PRO ARG LYS MET TYR SER CYS ALA PHE SEQRES 2 A 575 GLU THR THR THR LYS VAL GLU ASP CYS ARG VAL TRP ALA SEQRES 3 A 575 TYR GLY TYR MET ASN ILE GLU ASP HIS SER GLU TYR LYS SEQRES 4 A 575 ILE GLY ASN SER LEU ASP GLU PHE MET ALA TRP VAL LEU SEQRES 5 A 575 LYS VAL GLN ALA ASP LEU TYR PHE HIS ASN LEU LYS PHE SEQRES 6 A 575 ALA GLY ALA PHE ILE ILE ASN TRP LEU GLU ARG ASN GLY SEQRES 7 A 575 PHE LYS TRP SER ALA ASP GLY LEU PRO ASN THR TYR ASN SEQRES 8 A 575 THR ILE ILE SER ARG MET GLY GLN TRP TYR MET ILE ASP SEQRES 9 A 575 ILE CYS LEU GLY TYR LYS GLY LYS ARG LYS ILE HIS THR SEQRES 10 A 575 VAL ILE TYR ASP SER LEU LYS LYS LEU PRO PHE PRO VAL SEQRES 11 A 575 LYS LYS ILE ALA LYS ASP PHE LYS LEU THR VAL LEU LYS SEQRES 12 A 575 GLY ASP ILE ASP TYR HIS LYS GLU ARG PRO VAL GLY TYR SEQRES 13 A 575 LYS ILE THR PRO GLU GLU TYR ALA TYR ILE LYS ASN ASP SEQRES 14 A 575 ILE GLN ILE ILE ALA GLU ALA LEU LEU ILE GLN PHE LYS SEQRES 15 A 575 GLN GLY LEU ASP ARG MET THR ALA GLY SER ASP SER LEU SEQRES 16 A 575 LYS GLY PHE LYS ASP ILE ILE THR THR LYS LYS PHE LYS SEQRES 17 A 575 LYS VAL PHE PRO THR LEU SER LEU GLY LEU ASP LYS GLU SEQRES 18 A 575 VAL ARG TYR ALA TYR ARG GLY GLY PHE THR TRP LEU ASN SEQRES 19 A 575 ASP ARG PHE LYS GLU LYS GLU ILE GLY GLU GLY MET VAL SEQRES 20 A 575 PHE ASP VAL ASN SER LEU TYR PRO ALA GLN MET TYR SER SEQRES 21 A 575 ARG LEU LEU PRO TYR GLY GLU PRO ILE VAL PHE GLU GLY SEQRES 22 A 575 LYS TYR VAL TRP ASP GLU ASP TYR PRO LEU HIS ILE GLN SEQRES 23 A 575 HIS ILE ARG CYS GLU PHE GLU LEU LYS GLU GLY TYR ILE SEQRES 24 A 575 PRO THR ILE GLN ILE LYS ARG SER ARG PHE TYR LYS GLY SEQRES 25 A 575 ASN GLU TYR LEU LYS SER SER GLY GLY GLU ILE ALA ASP SEQRES 26 A 575 LEU TRP LEU SER ASN VAL ASP LEU GLU LEU MET LYS GLU SEQRES 27 A 575 HIS TYR ASP LEU TYR ASN VAL GLU TYR ILE SER GLY LEU SEQRES 28 A 575 LYS PHE LYS ALA THR THR GLY LEU PHE LYS ASP PHE ILE SEQRES 29 A 575 ASP LYS TRP THR TYR ILE LYS THR THR SER GLU GLY ALA SEQRES 30 A 575 ILE LYS GLN LEU ALA LYS LEU MET LEU ASN SER LEU TYR SEQRES 31 A 575 GLY LYS PHE ALA SER ASN PRO ASP VAL THR GLY LYS VAL SEQRES 32 A 575 PRO TYR LEU LYS GLU ASN GLY ALA LEU GLY PHE ARG LEU SEQRES 33 A 575 GLY GLU GLU GLU THR LYS ASP PRO VAL TYR THR PRO MET SEQRES 34 A 575 GLY VAL PHE ILE THR ALA TRP ALA ARG TYR THR THR ILE SEQRES 35 A 575 THR ALA ALA GLN ALA CYS TYR ASP ARG ILE ILE TYR CYS SEQRES 36 A 575 ASP THR ASP SER ILE HIS LEU THR GLY THR GLU ILE PRO SEQRES 37 A 575 ASP VAL ILE LYS ASP ILE VAL ASP PRO LYS LYS LEU GLY SEQRES 38 A 575 TYR TRP ALA HIS GLU SER THR PHE LYS ARG ALA LYS TYR SEQRES 39 A 575 LEU ARG GLN LYS THR TYR ILE GLN ASP ILE TYR MET LYS SEQRES 40 A 575 GLU VAL ASP GLY LYS LEU VAL GLU GLY SER PRO ASP ASP SEQRES 41 A 575 TYR THR ASP ILE LYS PHE SER VAL LYS CYS ALA GLY MET SEQRES 42 A 575 THR ASP LYS ILE LYS LYS GLU VAL THR PHE GLU ASN PHE SEQRES 43 A 575 LYS VAL GLY PHE SER ARG LYS MET LYS PRO LYS PRO VAL SEQRES 44 A 575 GLN VAL PRO GLY GLY VAL VAL LEU VAL ASP ASP THR PHE SEQRES 45 A 575 THR ILE LYS SEQRES 1 B 575 MET LYS HIS MET PRO ARG LYS MET TYR SER CYS ALA PHE SEQRES 2 B 575 GLU THR THR THR LYS VAL GLU ASP CYS ARG VAL TRP ALA SEQRES 3 B 575 TYR GLY TYR MET ASN ILE GLU ASP HIS SER GLU TYR LYS SEQRES 4 B 575 ILE GLY ASN SER LEU ASP GLU PHE MET ALA TRP VAL LEU SEQRES 5 B 575 LYS VAL GLN ALA ASP LEU TYR PHE HIS ASN LEU LYS PHE SEQRES 6 B 575 ALA GLY ALA PHE ILE ILE ASN TRP LEU GLU ARG ASN GLY SEQRES 7 B 575 PHE LYS TRP SER ALA ASP GLY LEU PRO ASN THR TYR ASN SEQRES 8 B 575 THR ILE ILE SER ARG MET GLY GLN TRP TYR MET ILE ASP SEQRES 9 B 575 ILE CYS LEU GLY TYR LYS GLY LYS ARG LYS ILE HIS THR SEQRES 10 B 575 VAL ILE TYR ASP SER LEU LYS LYS LEU PRO PHE PRO VAL SEQRES 11 B 575 LYS LYS ILE ALA LYS ASP PHE LYS LEU THR VAL LEU LYS SEQRES 12 B 575 GLY ASP ILE ASP TYR HIS LYS GLU ARG PRO VAL GLY TYR SEQRES 13 B 575 LYS ILE THR PRO GLU GLU TYR ALA TYR ILE LYS ASN ASP SEQRES 14 B 575 ILE GLN ILE ILE ALA GLU ALA LEU LEU ILE GLN PHE LYS SEQRES 15 B 575 GLN GLY LEU ASP ARG MET THR ALA GLY SER ASP SER LEU SEQRES 16 B 575 LYS GLY PHE LYS ASP ILE ILE THR THR LYS LYS PHE LYS SEQRES 17 B 575 LYS VAL PHE PRO THR LEU SER LEU GLY LEU ASP LYS GLU SEQRES 18 B 575 VAL ARG TYR ALA TYR ARG GLY GLY PHE THR TRP LEU ASN SEQRES 19 B 575 ASP ARG PHE LYS GLU LYS GLU ILE GLY GLU GLY MET VAL SEQRES 20 B 575 PHE ASP VAL ASN SER LEU TYR PRO ALA GLN MET TYR SER SEQRES 21 B 575 ARG LEU LEU PRO TYR GLY GLU PRO ILE VAL PHE GLU GLY SEQRES 22 B 575 LYS TYR VAL TRP ASP GLU ASP TYR PRO LEU HIS ILE GLN SEQRES 23 B 575 HIS ILE ARG CYS GLU PHE GLU LEU LYS GLU GLY TYR ILE SEQRES 24 B 575 PRO THR ILE GLN ILE LYS ARG SER ARG PHE TYR LYS GLY SEQRES 25 B 575 ASN GLU TYR LEU LYS SER SER GLY GLY GLU ILE ALA ASP SEQRES 26 B 575 LEU TRP LEU SER ASN VAL ASP LEU GLU LEU MET LYS GLU SEQRES 27 B 575 HIS TYR ASP LEU TYR ASN VAL GLU TYR ILE SER GLY LEU SEQRES 28 B 575 LYS PHE LYS ALA THR THR GLY LEU PHE LYS ASP PHE ILE SEQRES 29 B 575 ASP LYS TRP THR TYR ILE LYS THR THR SER GLU GLY ALA SEQRES 30 B 575 ILE LYS GLN LEU ALA LYS LEU MET LEU ASN SER LEU TYR SEQRES 31 B 575 GLY LYS PHE ALA SER ASN PRO ASP VAL THR GLY LYS VAL SEQRES 32 B 575 PRO TYR LEU LYS GLU ASN GLY ALA LEU GLY PHE ARG LEU SEQRES 33 B 575 GLY GLU GLU GLU THR LYS ASP PRO VAL TYR THR PRO MET SEQRES 34 B 575 GLY VAL PHE ILE THR ALA TRP ALA ARG TYR THR THR ILE SEQRES 35 B 575 THR ALA ALA GLN ALA CYS TYR ASP ARG ILE ILE TYR CYS SEQRES 36 B 575 ASP THR ASP SER ILE HIS LEU THR GLY THR GLU ILE PRO SEQRES 37 B 575 ASP VAL ILE LYS ASP ILE VAL ASP PRO LYS LYS LEU GLY SEQRES 38 B 575 TYR TRP ALA HIS GLU SER THR PHE LYS ARG ALA LYS TYR SEQRES 39 B 575 LEU ARG GLN LYS THR TYR ILE GLN ASP ILE TYR MET LYS SEQRES 40 B 575 GLU VAL ASP GLY LYS LEU VAL GLU GLY SER PRO ASP ASP SEQRES 41 B 575 TYR THR ASP ILE LYS PHE SER VAL LYS CYS ALA GLY MET SEQRES 42 B 575 THR ASP LYS ILE LYS LYS GLU VAL THR PHE GLU ASN PHE SEQRES 43 B 575 LYS VAL GLY PHE SER ARG LYS MET LYS PRO LYS PRO VAL SEQRES 44 B 575 GLN VAL PRO GLY GLY VAL VAL LEU VAL ASP ASP THR PHE SEQRES 45 B 575 THR ILE LYS MODRES 2PYJ DOC X 10 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2PYJ DOC Q 10 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2PYJ DOC J 10 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC X 10 18 HET DOC Q 10 18 HET DOC J 10 18 HET EDO X2782 4 HET EDO X2798 4 HET EDO Y2772 4 HET EDO Y2788 4 HET EDO Q2785 4 HET EDO R2796 4 HET EDO K2765 4 HET EDO K2766 4 HET EDO K2767 4 HET MN A9003 1 HET MG A9004 1 HET DGT A1588 31 HET EDO A2770 4 HET EDO A2771 4 HET EDO A2773 4 HET EDO A2774 4 HET EDO A2780 4 HET EDO A2781 4 HET EDO A2784 4 HET EDO A2786 4 HET EDO A2790 4 HET EDO A2792 4 HET EDO A2793 4 HET EDO A2794 4 HET EDO A2797 4 HET EDO A2800 4 HET EDO A2801 4 HET EDO A2803 4 HET EDO A2804 4 HET MN B9001 1 HET MG B9002 1 HET DGT B1589 31 HET EDO B2762 4 HET EDO B2763 4 HET EDO B2764 4 HET EDO B2769 4 HET EDO B2775 4 HET EDO B2776 4 HET EDO B2777 4 HET EDO B2778 4 HET EDO B2779 4 HET EDO B2787 4 HET EDO B2789 4 HET EDO B2791 4 HET EDO B2795 4 HET EDO B2802 4 HET EDO B2805 4 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 DOC 3(C9 H14 N3 O6 P) FORMUL 9 EDO 41(C2 H6 O2) FORMUL 18 MN 2(MN 2+) FORMUL 19 MG 2(MG 2+) FORMUL 20 DGT 2(C10 H16 N5 O13 P3) FORMUL 56 HOH *969(H2 O) HELIX 1 1 SER A 43 GLN A 55 1 13 HELIX 2 2 ASN A 62 ASN A 77 1 16 HELIX 3 3 LEU A 123 LYS A 125 5 3 HELIX 4 4 PRO A 129 LYS A 138 1 10 HELIX 5 5 THR A 159 GLN A 183 1 25 HELIX 6 6 THR A 189 THR A 203 1 15 HELIX 7 7 THR A 203 PHE A 211 1 9 HELIX 8 8 SER A 215 TYR A 224 1 10 HELIX 9 9 SER A 252 ARG A 261 1 10 HELIX 10 10 ASN A 330 HIS A 339 1 10 HELIX 11 11 PHE A 360 SER A 374 1 15 HELIX 12 12 GLU A 375 ALA A 394 1 20 HELIX 13 13 TYR A 426 CYS A 448 1 23 HELIX 14 14 THR A 534 LYS A 539 1 6 HELIX 15 15 LYS B 18 CYS B 22 5 5 HELIX 16 16 SER B 43 GLN B 55 1 13 HELIX 17 17 ASN B 62 ASN B 77 1 16 HELIX 18 18 LEU B 123 LYS B 125 5 3 HELIX 19 19 PRO B 129 LYS B 138 1 10 HELIX 20 20 THR B 159 GLN B 183 1 25 HELIX 21 21 THR B 189 THR B 203 1 15 HELIX 22 22 THR B 203 PHE B 211 1 9 HELIX 23 23 SER B 215 TYR B 224 1 10 HELIX 24 24 ASP B 235 LYS B 238 5 4 HELIX 25 25 SER B 252 ARG B 261 1 10 HELIX 26 26 ASN B 330 HIS B 339 1 10 HELIX 27 27 PHE B 360 THR B 373 1 14 HELIX 28 28 GLU B 375 ALA B 394 1 20 HELIX 29 29 TYR B 426 CYS B 448 1 23 HELIX 30 30 PRO B 468 VAL B 475 5 8 HELIX 31 31 THR B 534 LYS B 539 1 6 SHEET 1 A 8 ASP A 34 GLY A 41 0 SHEET 2 A 8 VAL A 24 ASN A 31 -1 N ASN A 31 O GLU A 37 SHEET 3 A 8 MET A 8 THR A 15 -1 N GLU A 14 O ALA A 26 SHEET 4 A 8 ASP A 57 PHE A 60 1 O TYR A 59 N CYS A 11 SHEET 5 A 8 ARG A 113 ASP A 121 1 O TYR A 120 N LEU A 58 SHEET 6 A 8 TRP A 100 LYS A 110 -1 N GLY A 108 O ILE A 115 SHEET 7 A 8 THR A 89 ILE A 94 -1 N ASN A 91 O ASP A 104 SHEET 8 A 8 LYS A 80 TRP A 81 1 N LYS A 80 O TYR A 90 SHEET 1 B 6 THR A 231 LEU A 233 0 SHEET 2 B 6 ILE A 452 ASP A 456 -1 O CYS A 455 N TRP A 232 SHEET 3 B 6 SER A 459 THR A 463 -1 O HIS A 461 N ILE A 453 SHEET 4 B 6 GLY A 245 VAL A 250 -1 N MET A 246 O LEU A 462 SHEET 5 B 6 TRP A 483 ARG A 496 -1 O ALA A 484 N ASP A 249 SHEET 6 B 6 GLU A 241 ILE A 242 -1 N ILE A 242 O ALA A 492 SHEET 1 C 7 THR A 231 LEU A 233 0 SHEET 2 C 7 ILE A 452 ASP A 456 -1 O CYS A 455 N TRP A 232 SHEET 3 C 7 SER A 459 THR A 463 -1 O HIS A 461 N ILE A 453 SHEET 4 C 7 GLY A 245 VAL A 250 -1 N MET A 246 O LEU A 462 SHEET 5 C 7 TRP A 483 ARG A 496 -1 O ALA A 484 N ASP A 249 SHEET 6 C 7 THR A 499 MET A 506 -1 O ASP A 503 N LYS A 490 SHEET 7 C 7 ASP A 523 CYS A 530 -1 O LYS A 529 N TYR A 500 SHEET 1 D 4 LEU A 263 GLU A 272 0 SHEET 2 D 4 TYR A 340 THR A 356 -1 O THR A 356 N LEU A 263 SHEET 3 D 4 LEU A 283 LEU A 294 -1 N HIS A 287 O SER A 349 SHEET 4 D 4 ALA A 324 SER A 329 -1 O LEU A 328 N GLN A 286 SHEET 1 E 2 LYS A 402 LEU A 406 0 SHEET 2 E 2 LEU A 412 LEU A 416 -1 O ARG A 415 N VAL A 403 SHEET 1 F 2 SER A 551 VAL A 561 0 SHEET 2 F 2 GLY A 564 THR A 573 -1 O VAL A 566 N VAL A 559 SHEET 1 G 8 ASP B 34 GLY B 41 0 SHEET 2 G 8 VAL B 24 ASN B 31 -1 N TYR B 27 O GLY B 41 SHEET 3 G 8 MET B 8 THR B 15 -1 N SER B 10 O MET B 30 SHEET 4 G 8 ASP B 57 PHE B 60 1 O TYR B 59 N CYS B 11 SHEET 5 G 8 LYS B 114 ASP B 121 1 O TYR B 120 N LEU B 58 SHEET 6 G 8 TRP B 100 TYR B 109 -1 N GLY B 108 O ILE B 115 SHEET 7 G 8 THR B 89 ILE B 94 -1 N ASN B 91 O ASP B 104 SHEET 8 G 8 LYS B 80 TRP B 81 1 N LYS B 80 O TYR B 90 SHEET 1 H 7 THR B 231 LEU B 233 0 SHEET 2 H 7 ILE B 452 ASP B 456 -1 O CYS B 455 N TRP B 232 SHEET 3 H 7 SER B 459 THR B 463 -1 O HIS B 461 N ILE B 453 SHEET 4 H 7 GLY B 245 VAL B 250 -1 N MET B 246 O LEU B 462 SHEET 5 H 7 TRP B 483 ARG B 496 -1 O PHE B 489 N GLY B 245 SHEET 6 H 7 THR B 499 GLU B 508 -1 O ASP B 503 N LYS B 490 SHEET 7 H 7 LEU B 513 GLU B 515 -1 O VAL B 514 N LYS B 507 SHEET 1 I 4 GLU B 241 ILE B 242 0 SHEET 2 I 4 TRP B 483 ARG B 496 -1 O ALA B 492 N ILE B 242 SHEET 3 I 4 THR B 499 GLU B 508 -1 O ASP B 503 N LYS B 490 SHEET 4 I 4 ASP B 523 CYS B 530 -1 O ASP B 523 N MET B 506 SHEET 1 J 4 LEU B 263 GLU B 272 0 SHEET 2 J 4 TYR B 340 THR B 356 -1 O LYS B 352 N ILE B 269 SHEET 3 J 4 LEU B 283 LEU B 294 -1 N ARG B 289 O GLU B 346 SHEET 4 J 4 ALA B 324 SER B 329 -1 O LEU B 328 N GLN B 286 SHEET 1 K 2 LYS B 402 LEU B 406 0 SHEET 2 K 2 LEU B 412 LEU B 416 -1 O ARG B 415 N VAL B 403 SHEET 1 L 2 SER B 551 ARG B 552 0 SHEET 2 L 2 PHE B 572 THR B 573 -1 O PHE B 572 N ARG B 552 SHEET 1 M 2 PRO B 556 VAL B 559 0 SHEET 2 M 2 VAL B 566 ASP B 569 -1 O VAL B 568 N LYS B 557 LINK O3' DA X 9 P DOC X 10 1555 1555 1.61 LINK O3' DA Q 9 P DOC Q 10 1555 1555 1.63 LINK O3' DA J 9 P DOC J 10 1555 1555 1.61 LINK OD2 ASP A 249 MN MN A9003 1555 1555 1.96 LINK OD1 ASP A 249 MG MG A9004 1555 1555 2.15 LINK OD2 ASP A 249 MG MG A9004 1555 1555 3.01 LINK O VAL A 250 MN MN A9003 1555 1555 2.07 LINK OD1 ASP A 458 MN MN A9003 1555 1555 1.95 LINK OD2 ASP A 458 MG MG A9004 1555 1555 2.17 LINK O3G DGT A1588 MN MN A9003 1555 1555 1.96 LINK O2B DGT A1588 MN MN A9003 1555 1555 1.95 LINK O2A DGT A1588 MN MN A9003 1555 1555 2.03 LINK O2A DGT A1588 MG MG A9004 1555 1555 2.26 LINK MG MG A9004 O HOH A9158 1555 1555 2.20 LINK MG MG A9004 O HOH A9326 1555 1555 2.85 LINK OD1 ASP B 249 MN MN B9001 1555 1555 2.03 LINK OD2 ASP B 249 MG MG B9002 1555 1555 2.19 LINK O VAL B 250 MN MN B9001 1555 1555 2.06 LINK OD2 ASP B 458 MN MN B9001 1555 1555 1.63 LINK OD1 ASP B 458 MG MG B9002 1555 1555 2.18 LINK O3G DGT B1589 MN MN B9001 1555 1555 1.93 LINK O2B DGT B1589 MN MN B9001 1555 1555 2.05 LINK O2A DGT B1589 MN MN B9001 1555 1555 2.02 LINK O2A DGT B1589 MG MG B9002 1555 1555 2.30 LINK MG MG B9002 O HOH B9084 1555 1555 2.22 LINK MG MG B9002 O HOH B9130 1555 1555 2.24 CISPEP 1 LYS B 110 GLY B 111 0 -14.95 CISPEP 2 TYR B 148 HIS B 149 0 -0.65 CISPEP 3 PRO B 562 GLY B 563 0 -1.57 CISPEP 4 GLY B 563 GLY B 564 0 6.36 SITE 1 AC1 5 ASP B 249 VAL B 250 ASP B 458 DGT B1589 SITE 2 AC1 5 MG B9002 SITE 1 AC2 7 ASP B 249 ASP B 458 DGT B1589 MN B9001 SITE 2 AC2 7 HOH B9084 HOH B9130 DOC Q 10 SITE 1 AC3 5 ASP A 249 VAL A 250 ASP A 458 DGT A1588 SITE 2 AC3 5 MG A9004 SITE 1 AC4 7 ASP A 249 ASP A 458 DGT A1588 MN A9003 SITE 2 AC4 7 HOH A9158 HOH A9326 DOC X 10 SITE 1 AC5 23 ASP A 249 VAL A 250 ASN A 251 SER A 252 SITE 2 AC5 23 LEU A 253 TYR A 254 LYS A 371 LYS A 383 SITE 3 AC5 23 ASN A 387 TYR A 390 ASP A 458 MN A9003 SITE 4 AC5 23 MG A9004 HOH A9018 HOH A9042 HOH A9090 SITE 5 AC5 23 HOH A9155 HOH A9236 HOH A9326 HOH A9435 SITE 6 AC5 23 DOC X 10 DC Y 6 DG Y 7 SITE 1 AC6 25 ASP B 249 VAL B 250 ASN B 251 SER B 252 SITE 2 AC6 25 LEU B 253 TYR B 254 LYS B 371 LYS B 383 SITE 3 AC6 25 ASN B 387 TYR B 390 THR B 457 ASP B 458 SITE 4 AC6 25 EDO B2775 MN B9001 MG B9002 HOH B9013 SITE 5 AC6 25 HOH B9017 HOH B9047 HOH B9048 HOH B9065 SITE 6 AC6 25 HOH B9130 HOH B9150 DOC Q 10 DC R 6 SITE 7 AC6 25 DG R 7 SITE 1 AC7 5 ARG B 491 ASP B 503 THR B 542 PHE B 543 SITE 2 AC7 5 HOH B9125 SITE 1 AC8 5 ILE B 504 MET B 506 GLU B 515 LYS B 525 SITE 2 AC8 5 HOH B9266 SITE 1 AC9 2 TYR B 265 THR B 356 SITE 1 BC1 3 DA K 6 DA K 10 HOH K1218 SITE 1 BC2 3 DA K 6 EDO K2767 DC R 4 SITE 1 BC3 7 ASP B 104 LYS B 114 HIS B 116 DC K 5 SITE 2 BC3 7 DA K 6 EDO K2766 DC R 4 SITE 1 BC4 9 PHE A 309 THR B 368 THR B 372 LYS B 478 SITE 2 BC4 9 LYS B 479 LEU B 480 HOH B9026 HOH B9217 SITE 3 BC4 9 HOH B9296 SITE 1 BC5 2 GLY A 481 TYR A 482 SITE 1 BC6 6 LYS A 274 HIS A 284 GLN A 286 LEU A 333 SITE 2 BC6 6 LYS A 337 TYR A 347 SITE 1 BC7 4 LYS A 305 DA Y 9 HOH Y1029 HOH Y1030 SITE 1 BC8 3 ARG A 308 EDO A2774 ASP B 365 SITE 1 BC9 3 EDO A2773 HOH A9397 TYR B 369 SITE 1 CC1 6 ASN B 251 LYS B 371 LYS B 379 PRO B 477 SITE 2 CC1 6 DGT B1589 HOH B9008 SITE 1 CC2 2 GLY B 376 LYS B 379 SITE 1 CC3 7 HIS A 149 LYS A 150 GLU A 151 GLU B 334 SITE 2 CC3 7 GLU B 338 TRP B 436 TYR B 439 SITE 1 CC4 8 ARG B 227 THR B 301 ILE B 302 GLN B 303 SITE 2 CC4 8 ASP B 332 ARG B 438 HOH B9097 HOH B9122 SITE 1 CC5 4 GLU A 151 PRO A 153 PRO B 282 HOH B9287 SITE 1 CC6 3 ASN A 62 PRO A 558 HOH A9262 SITE 1 CC7 3 ASN A 62 PRO A 129 HOH A9245 SITE 1 CC8 6 PHE A 414 ARG A 415 LEU A 416 DT X 4 SITE 2 CC8 6 DG X 5 HOH X 834 SITE 1 CC9 3 LYS A 206 LEU A 359 HOH A9377 SITE 1 DC1 7 DT Q 8 DA Q 9 DOC Q 10 HOH Q2791 SITE 2 DC1 7 HOH Q2796 HOH Q2799 HOH Q2800 SITE 1 DC2 4 GLN A 380 LYS A 383 HOH A9229 HOH A9317 SITE 1 DC3 3 MET B 4 GLU B 291 HOH B9324 SITE 1 DC4 1 DG Y 14 SITE 1 DC5 5 SER A 551 GLU B 33 LYS B 182 GLU B 296 SITE 2 DC5 5 HOH B9277 SITE 1 DC6 5 ARG A 552 MET A 554 EDO A2803 ASP B 34 SITE 2 DC6 5 GLU B 296 SITE 1 DC7 3 TYR B 29 SER B 36 TYR B 38 SITE 1 DC8 4 LYS A 143 ILE A 323 HOH A9123 HOH A9291 SITE 1 DC9 2 GLN A 183 LYS A 366 SITE 1 EC1 5 GLN A 257 THR A 440 GLY A 481 HOH A9110 SITE 2 EC1 5 HOH A9142 SITE 1 EC2 1 HOH B9202 SITE 1 EC3 4 ARG B 496 LYS B 575 DG R 11 DC R 12 SITE 1 EC4 8 LYS A 64 GLY A 98 TRP A 100 LYS A 402 SITE 2 EC4 8 PHE A 414 HOH A9197 DG X 5 DC X 6 SITE 1 EC5 6 PHE A 414 GLN A 560 HOH A9306 DG X 5 SITE 2 EC5 6 DC X 6 HOH X1053 SITE 1 EC6 4 LYS A 64 MET A 97 DC X 6 DT X 7 SITE 1 EC7 3 GLY A 41 ASN A 42 GLU A 46 SITE 1 EC8 6 PHE A 309 TYR A 310 SER A 319 GLY A 320 SITE 2 EC8 6 THR B 372 LYS B 478 SITE 1 EC9 9 GLY A 549 PHE A 550 SER A 551 ARG A 552 SITE 2 EC9 9 EDO A2790 HOH A9198 GLU B 33 ASP B 34 SITE 3 EC9 9 HIS B 35 SITE 1 FC1 6 THR A 92 ILE A 93 ILE A 94 GLY A 401 SITE 2 FC1 6 LYS A 402 HOH A9271 SITE 1 FC2 4 LYS A 150 SER B 260 ARG B 261 HOH B9037 CRYST1 72.835 114.667 104.761 90.00 94.07 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013730 0.000000 0.000977 0.00000 SCALE2 0.000000 0.008721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009570 0.00000