PDB Short entry for 2Q7U HEADER HYDROLASE 07-JUN-07 2Q7U TITLE CRYSTAL STRUCTURE OF THE F PLASMID TRAI RELAXASE DOMAIN WITH THE TITLE 2 SCISSILE THYMIDINE BASE AND IMIDODIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRAI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RELAXASE DOMAIN (UNP RESIDUES 1-300); COMPND 5 SYNONYM: DNA HELICASE I; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 STRAIN: TRAI; SOURCE 4 GENE: TRAI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTYB2 KEYWDS RELAXASE, HYDROLASE, CONJUGATION, ALTERNATIVE INITIATION, ATP- KEYWDS 2 BINDING, DNA-BINDING, HELICASE, NUCLEOTIDE-BINDING, PLASMID EXPDTA X-RAY DIFFRACTION AUTHOR S.A.LUJAN,M.R.REDINBO REVDAT 4 30-AUG-23 2Q7U 1 REMARK REVDAT 3 20-OCT-21 2Q7U 1 REMARK SEQADV REVDAT 2 24-FEB-09 2Q7U 1 VERSN REVDAT 1 20-MAY-08 2Q7U 0 JRNL AUTH S.A.LUJAN,L.M.GUOGAS,H.RAGONESE,S.W.MATSON,M.R.REDINBO JRNL TITL DISRUPTING ANTIBIOTIC RESISTANCE PROPAGATION BY INHIBITING JRNL TITL 2 THE CONJUGATIVE DNA RELAXASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 12282 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17630285 JRNL DOI 10.1073/PNAS.0702760104 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 116581.950 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.1 REMARK 3 NUMBER OF REFLECTIONS : 9059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.400 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1035 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE : 0.4190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 125 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4132 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.48000 REMARK 3 B22 (A**2) : 32.74000 REMARK 3 B33 (A**2) : -27.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.50 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.68 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.490 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.680 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.420 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 14.49 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : PNP.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : PNP.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Q7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAR-08. REMARK 100 THE DEPOSITION ID IS D_1000043258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97173 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10447 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.38200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP (CCP4) REMARK 200 STARTING MODEL: PDB ENTRY 1P4D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 50 MM NACL, 10% REMARK 280 GLYCEROL, 10 MM TRIS-HCL PH 7.5, MOTHER LIQUOR: 75 MM SODIUM REMARK 280 NITRATE, 14% W/V PEG 3350, 10 MM SPERMINE, 110 UM ORIT DNA REMARK 280 SOAKED (24 HOURS): 200 MM AMMONIUM NITRATE, 40% W/V PEG 3350, REMARK 280 AND 1 MM N,N-IMIDOBISPHOSPHONATE (PNP), VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 128 REMARK 465 GLY A 129 REMARK 465 SER A 238 REMARK 465 GLN A 239 REMARK 465 THR A 240 REMARK 465 ILE A 241 REMARK 465 ARG A 242 REMARK 465 GLU A 243 REMARK 465 ALA A 244 REMARK 465 VAL A 245 REMARK 465 GLY A 246 REMARK 465 GLU A 247 REMARK 465 ASP A 248 REMARK 465 ALA A 249 REMARK 465 SER A 250 REMARK 465 LEU A 251 REMARK 465 LYS A 252 REMARK 465 SER A 253 REMARK 465 ARG A 254 REMARK 465 ASP A 255 REMARK 465 VAL A 256 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 LEU A 259 REMARK 465 ASP A 260 REMARK 465 THR A 261 REMARK 465 ARG A 262 REMARK 465 LYS A 263 REMARK 465 SER A 264 REMARK 465 LYS A 265 REMARK 465 GLN A 266 REMARK 465 HIS A 267 REMARK 465 SER A 301 REMARK 465 ASP B 1065 REMARK 465 LEU B 1066 REMARK 465 SER B 1067 REMARK 465 ARG B 1068 REMARK 465 MET B 1069 REMARK 465 GLN B 1070 REMARK 465 ASP B 1071 REMARK 465 GLY B 1072 REMARK 465 GLY B 1236 REMARK 465 ARG B 1237 REMARK 465 SER B 1238 REMARK 465 GLN B 1239 REMARK 465 THR B 1240 REMARK 465 ILE B 1241 REMARK 465 ARG B 1242 REMARK 465 GLU B 1243 REMARK 465 ALA B 1244 REMARK 465 VAL B 1245 REMARK 465 GLY B 1246 REMARK 465 GLU B 1247 REMARK 465 ASP B 1248 REMARK 465 ALA B 1249 REMARK 465 SER B 1250 REMARK 465 LEU B 1251 REMARK 465 LYS B 1252 REMARK 465 SER B 1253 REMARK 465 ARG B 1254 REMARK 465 ASP B 1255 REMARK 465 VAL B 1256 REMARK 465 ALA B 1257 REMARK 465 ALA B 1258 REMARK 465 LEU B 1259 REMARK 465 ASP B 1260 REMARK 465 THR B 1261 REMARK 465 ARG B 1262 REMARK 465 LYS B 1263 REMARK 465 GLN B 1266 REMARK 465 SER B 1301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B1227 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 136.10 175.86 REMARK 500 ALA A 10 -83.95 -9.92 REMARK 500 TYR A 17 -9.80 -50.29 REMARK 500 ASP A 19 101.28 -57.90 REMARK 500 LYS A 20 -20.91 -37.67 REMARK 500 TYR A 23 40.89 -146.59 REMARK 500 ASP A 99 74.44 -110.80 REMARK 500 VAL A 114 -33.89 -39.66 REMARK 500 THR A 136 -49.08 -137.63 REMARK 500 LEU A 156 104.23 -58.51 REMARK 500 ASP A 178 93.25 -170.08 REMARK 500 VAL A 180 -102.44 -55.61 REMARK 500 ALA A 191 32.05 -81.20 REMARK 500 ASN A 192 13.52 -163.22 REMARK 500 HIS A 221 8.37 57.08 REMARK 500 MET A 223 93.59 -10.28 REMARK 500 PRO A 230 43.59 -58.51 REMARK 500 ASP A 269 123.29 176.89 REMARK 500 GLU A 283 45.67 -92.16 REMARK 500 ALA A 299 -84.17 -134.79 REMARK 500 ASP B1019 96.15 -49.76 REMARK 500 LYS B1020 -27.46 -32.17 REMARK 500 ASP B1021 32.22 -91.43 REMARK 500 ALA B1034 163.62 179.04 REMARK 500 LYS B1049 -37.92 -36.62 REMARK 500 THR B1053 -72.08 -56.24 REMARK 500 GLU B1057 35.63 -86.37 REMARK 500 PRO B1061 95.43 -68.16 REMARK 500 ASP B1062 82.70 73.92 REMARK 500 ASN B1074 79.65 -102.64 REMARK 500 HIS B1076 37.30 -177.67 REMARK 500 VAL B1125 110.50 -165.83 REMARK 500 ASP B1128 -33.03 74.54 REMARK 500 SER B1149 -160.32 -106.41 REMARK 500 GLN B1152 38.85 80.51 REMARK 500 ASN B1169 16.21 59.84 REMARK 500 PRO B1227 124.05 -34.88 REMARK 500 PRO B1230 33.80 -49.94 REMARK 500 ALA B1233 -4.27 -56.31 REMARK 500 VAL B1268 13.95 -142.49 REMARK 500 ASP B1269 141.28 79.24 REMARK 500 PRO B1270 -85.39 -68.62 REMARK 500 ALA B1275 -30.32 -38.99 REMARK 500 GLN B1279 -72.99 -62.50 REMARK 500 ILE B1288 -75.02 -31.82 REMARK 500 ARG B1292 -70.90 -54.09 REMARK 500 ARG B1298 -77.87 -48.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PON A 3002 REMARK 610 TMP A 2001 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PON A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P4D RELATED DB: PDB REMARK 900 APO F PLASMID TRAI REMARK 900 RELATED ID: 1A0I RELATED DB: PDB REMARK 900 F PLASMID TRAI WITH UNCLEAVED ORIT DNA REMARK 900 RELATED ID: 1OMH RELATED DB: PDB REMARK 900 METAL FREE R388 TRWC WITH ORIT DNA REMARK 900 RELATED ID: 1OSB RELATED DB: PDB REMARK 900 METAL FREE R388 TRWC WITH ORIT DNA REMARK 900 RELATED ID: 1QX0 RELATED DB: PDB REMARK 900 R388 TRWC WITH ORIT DNA REMARK 900 RELATED ID: 2CDM RELATED DB: PDB REMARK 900 R388 TRWC WITH ORIT DNA REMARK 900 RELATED ID: 2Q7T RELATED DB: PDB DBREF 2Q7U A 1 300 UNP P14565 TRAI1_ECOLI 1 300 DBREF 2Q7U B 1001 1300 UNP P14565 TRAI1_ECOLI 1 300 SEQADV 2Q7U PHE A 16 UNP P14565 TYR 16 ENGINEERED MUTATION SEQADV 2Q7U SER A 301 UNP P14565 EXPRESSION TAG SEQADV 2Q7U PHE B 1016 UNP P14565 TYR 16 ENGINEERED MUTATION SEQADV 2Q7U SER B 1301 UNP P14565 EXPRESSION TAG SEQRES 1 A 301 MET MET SER ILE ALA GLN VAL ARG SER ALA GLY SER ALA SEQRES 2 A 301 GLY ASN PHE TYR THR ASP LYS ASP ASN TYR TYR VAL LEU SEQRES 3 A 301 GLY SER MET GLY GLU ARG TRP ALA GLY ARG GLY ALA GLU SEQRES 4 A 301 GLN LEU GLY LEU GLN GLY SER VAL ASP LYS ASP VAL PHE SEQRES 5 A 301 THR ARG LEU LEU GLU GLY ARG LEU PRO ASP GLY ALA ASP SEQRES 6 A 301 LEU SER ARG MET GLN ASP GLY SER ASN ARG HIS ARG PRO SEQRES 7 A 301 GLY TYR ASP LEU THR PHE SER ALA PRO LYS SER VAL SER SEQRES 8 A 301 MET MET ALA MET LEU GLY GLY ASP LYS ARG LEU ILE ASP SEQRES 9 A 301 ALA HIS ASN GLN ALA VAL ASP PHE ALA VAL ARG GLN VAL SEQRES 10 A 301 GLU ALA LEU ALA SER THR ARG VAL MET THR ASP GLY GLN SEQRES 11 A 301 SER GLU THR VAL LEU THR GLY ASN LEU VAL MET ALA LEU SEQRES 12 A 301 PHE ASN HIS ASP THR SER ARG ASP GLN GLU PRO GLN LEU SEQRES 13 A 301 HIS THR HIS ALA VAL VAL ALA ASN VAL THR GLN HIS ASN SEQRES 14 A 301 GLY GLU TRP LYS THR LEU SER SER ASP LYS VAL GLY LYS SEQRES 15 A 301 THR GLY PHE ILE GLU ASN VAL TYR ALA ASN GLN ILE ALA SEQRES 16 A 301 PHE GLY ARG LEU TYR ARG GLU LYS LEU LYS GLU GLN VAL SEQRES 17 A 301 GLU ALA LEU GLY TYR GLU THR GLU VAL VAL GLY LYS HIS SEQRES 18 A 301 GLY MET TRP GLU MET PRO GLY VAL PRO VAL GLU ALA PHE SEQRES 19 A 301 SER GLY ARG SER GLN THR ILE ARG GLU ALA VAL GLY GLU SEQRES 20 A 301 ASP ALA SER LEU LYS SER ARG ASP VAL ALA ALA LEU ASP SEQRES 21 A 301 THR ARG LYS SER LYS GLN HIS VAL ASP PRO GLU ILE LYS SEQRES 22 A 301 MET ALA GLU TRP MET GLN THR LEU LYS GLU THR GLY PHE SEQRES 23 A 301 ASP ILE ARG ALA TYR ARG ASP ALA ALA ASP GLN ARG ALA SEQRES 24 A 301 ASP SER SEQRES 1 B 301 MET MET SER ILE ALA GLN VAL ARG SER ALA GLY SER ALA SEQRES 2 B 301 GLY ASN PHE TYR THR ASP LYS ASP ASN TYR TYR VAL LEU SEQRES 3 B 301 GLY SER MET GLY GLU ARG TRP ALA GLY ARG GLY ALA GLU SEQRES 4 B 301 GLN LEU GLY LEU GLN GLY SER VAL ASP LYS ASP VAL PHE SEQRES 5 B 301 THR ARG LEU LEU GLU GLY ARG LEU PRO ASP GLY ALA ASP SEQRES 6 B 301 LEU SER ARG MET GLN ASP GLY SER ASN ARG HIS ARG PRO SEQRES 7 B 301 GLY TYR ASP LEU THR PHE SER ALA PRO LYS SER VAL SER SEQRES 8 B 301 MET MET ALA MET LEU GLY GLY ASP LYS ARG LEU ILE ASP SEQRES 9 B 301 ALA HIS ASN GLN ALA VAL ASP PHE ALA VAL ARG GLN VAL SEQRES 10 B 301 GLU ALA LEU ALA SER THR ARG VAL MET THR ASP GLY GLN SEQRES 11 B 301 SER GLU THR VAL LEU THR GLY ASN LEU VAL MET ALA LEU SEQRES 12 B 301 PHE ASN HIS ASP THR SER ARG ASP GLN GLU PRO GLN LEU SEQRES 13 B 301 HIS THR HIS ALA VAL VAL ALA ASN VAL THR GLN HIS ASN SEQRES 14 B 301 GLY GLU TRP LYS THR LEU SER SER ASP LYS VAL GLY LYS SEQRES 15 B 301 THR GLY PHE ILE GLU ASN VAL TYR ALA ASN GLN ILE ALA SEQRES 16 B 301 PHE GLY ARG LEU TYR ARG GLU LYS LEU LYS GLU GLN VAL SEQRES 17 B 301 GLU ALA LEU GLY TYR GLU THR GLU VAL VAL GLY LYS HIS SEQRES 18 B 301 GLY MET TRP GLU MET PRO GLY VAL PRO VAL GLU ALA PHE SEQRES 19 B 301 SER GLY ARG SER GLN THR ILE ARG GLU ALA VAL GLY GLU SEQRES 20 B 301 ASP ALA SER LEU LYS SER ARG ASP VAL ALA ALA LEU ASP SEQRES 21 B 301 THR ARG LYS SER LYS GLN HIS VAL ASP PRO GLU ILE LYS SEQRES 22 B 301 MET ALA GLU TRP MET GLN THR LEU LYS GLU THR GLY PHE SEQRES 23 B 301 ASP ILE ARG ALA TYR ARG ASP ALA ALA ASP GLN ARG ALA SEQRES 24 B 301 ASP SER HET MG A3001 1 HET PON A3002 5 HET TMP A2001 20 HETNAM MG MAGNESIUM ION HETNAM PON IMIDO DIPHOSPHATE HETNAM TMP THYMIDINE-5'-PHOSPHATE FORMUL 3 MG MG 2+ FORMUL 4 PON H3 N O6 P2 2- FORMUL 5 TMP C10 H15 N2 O8 P FORMUL 6 HOH *45(H2 O) HELIX 1 1 SER A 9 ASP A 19 1 11 HELIX 2 2 LYS A 20 TYR A 24 5 5 HELIX 3 3 GLY A 35 GLN A 40 1 6 HELIX 4 4 ASP A 48 GLY A 58 1 11 HELIX 5 5 PRO A 87 LEU A 96 1 10 HELIX 6 6 ASP A 99 LEU A 120 1 22 HELIX 7 7 GLY A 184 ALA A 191 1 8 HELIX 8 8 ASN A 192 ALA A 210 1 19 HELIX 9 9 GLY A 219 GLY A 222 5 4 HELIX 10 10 PRO A 230 SER A 235 5 6 HELIX 11 11 ASP A 269 GLU A 283 1 15 HELIX 12 12 ASP A 287 ALA A 299 1 13 HELIX 13 13 SER B 1009 ASP B 1019 1 11 HELIX 14 14 LYS B 1020 TYR B 1023 5 4 HELIX 15 15 GLY B 1035 GLN B 1040 1 6 HELIX 16 16 ASP B 1048 GLU B 1057 1 10 HELIX 17 17 PRO B 1087 LEU B 1096 1 10 HELIX 18 18 LYS B 1100 GLU B 1118 1 19 HELIX 19 19 MET B 1126 GLN B 1130 5 5 HELIX 20 20 GLY B 1184 ASN B 1192 1 9 HELIX 21 21 ASN B 1192 LEU B 1211 1 20 HELIX 22 22 VAL B 1231 SER B 1235 5 5 HELIX 23 23 ASP B 1269 GLU B 1283 1 15 HELIX 24 24 ASP B 1287 ASP B 1300 1 14 SHEET 1 A 5 MET A 2 GLN A 6 0 SHEET 2 A 5 GLY A 79 SER A 85 -1 O ASP A 81 N ALA A 5 SHEET 3 A 5 HIS A 157 ALA A 163 -1 O ALA A 160 N LEU A 82 SHEET 4 A 5 VAL A 140 HIS A 146 -1 N PHE A 144 O HIS A 159 SHEET 5 A 5 ARG A 32 ALA A 34 -1 N ARG A 32 O LEU A 143 SHEET 1 B 2 MET A 69 GLN A 70 0 SHEET 2 B 2 SER A 73 ASN A 74 -1 O SER A 73 N GLN A 70 SHEET 1 C 2 SER A 122 VAL A 125 0 SHEET 2 C 2 GLU A 132 LEU A 135 -1 O GLU A 132 N VAL A 125 SHEET 1 D 2 THR A 166 HIS A 168 0 SHEET 2 D 2 GLU A 171 LYS A 173 -1 O GLU A 171 N HIS A 168 SHEET 1 E 2 GLU A 216 VAL A 217 0 SHEET 2 E 2 TRP A 224 GLU A 225 -1 O GLU A 225 N GLU A 216 SHEET 1 F 5 MET B1002 GLN B1006 0 SHEET 2 F 5 GLY B1079 SER B1085 -1 O ASP B1081 N ALA B1005 SHEET 3 F 5 PRO B1154 ALA B1163 -1 O VAL B1162 N TYR B1080 SHEET 4 F 5 MET B1141 THR B1148 -1 N ASP B1147 O GLN B1155 SHEET 5 F 5 ARG B1032 ALA B1034 -1 N ARG B1032 O LEU B1143 SHEET 1 G 2 SER B1122 THR B1123 0 SHEET 2 G 2 VAL B1134 LEU B1135 -1 O VAL B1134 N THR B1123 SHEET 1 H 2 GLU B1216 VAL B1217 0 SHEET 2 H 2 TRP B1224 GLU B1225 -1 O GLU B1225 N GLU B1216 SITE 1 AC1 4 PHE A 16 HIS A 146 HIS A 157 HIS A 159 SITE 1 AC2 5 ASN A 22 HIS A 146 ASP A 147 THR A 148 SITE 2 AC2 5 SER A 149 SITE 1 AC3 3 PHE A 16 ARG A 68 ARG A 150 CRYST1 44.500 86.310 127.910 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007818 0.00000