PDB Short entry for 2QCW HEADER SIGNALING PROTEIN 19-JUN-07 2QCW TITLE CRYSTAL STRUCTURE OF BONE MORPHOGENETIC PROTEIN-6 (BMP-6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP-6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS BMP, TGF-BETA, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.P.ALLENDORPH REVDAT 5 30-AUG-23 2QCW 1 REMARK REVDAT 4 13-JUL-11 2QCW 1 VERSN REVDAT 3 24-FEB-09 2QCW 1 VERSN REVDAT 2 30-OCT-07 2QCW 1 JRNL REVDAT 1 23-OCT-07 2QCW 0 JRNL AUTH G.P.ALLENDORPH,M.J.ISAACS,Y.KAWAKAMI,J.C.BELMONTE,S.CHOE JRNL TITL BMP-3 AND BMP-6 STRUCTURES ILLUMINATE THE NATURE OF BINDING JRNL TITL 2 SPECIFICITY WITH RECEPTORS. JRNL REF BIOCHEMISTRY V. 46 12238 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17924656 JRNL DOI 10.1021/BI700907K REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 15112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 808 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3410 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1646 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : -1.59000 REMARK 3 B33 (A**2) : 2.39000 REMARK 3 B12 (A**2) : -0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.194 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1713 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2340 ; 1.396 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 6.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;39.524 ;24.359 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 266 ;19.713 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;22.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1308 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 693 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1135 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 95 ; 0.174 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.205 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.156 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 0.679 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1688 ; 1.225 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 742 ; 1.410 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 652 ; 2.293 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): -46.7217 7.3099 13.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: -0.1785 REMARK 3 T33: -0.0653 T12: 0.0644 REMARK 3 T13: 0.0627 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.6321 L22: 17.1010 REMARK 3 L33: 2.1341 L12: -4.1741 REMARK 3 L13: -1.1627 L23: 1.9498 REMARK 3 S TENSOR REMARK 3 S11: -0.4032 S12: -0.1435 S13: -0.1334 REMARK 3 S21: 1.7987 S22: 0.3476 S23: 0.0214 REMARK 3 S31: -0.0772 S32: 0.0281 S33: 0.0556 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 104 REMARK 3 ORIGIN FOR THE GROUP (A): -46.4369 -6.9411 2.1443 REMARK 3 T TENSOR REMARK 3 T11: -0.1691 T22: -0.1615 REMARK 3 T33: -0.0756 T12: -0.0249 REMARK 3 T13: -0.0265 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.9698 L22: 18.9780 REMARK 3 L33: 2.8054 L12: 3.3352 REMARK 3 L13: 1.0091 L23: 4.6610 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.3285 S13: -0.1595 REMARK 3 S21: -0.0689 S22: 0.1114 S23: -0.4091 REMARK 3 S31: 0.0457 S32: 0.1136 S33: -0.0642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR, REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16679 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 42.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 57.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: BMP-7 LIGAND MONOMER TAKEN FROM PDB ENTRY 1LXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% 2-METHYL-2,4-PENTANEDIOL (MPD), REMARK 280 0.2 M TRI-NA CITRATE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.12567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.25133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.25133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.12567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICALLY ACTIVE UNIT IS THE DIMER WHICH IS FOUNF IN REMARK 300 THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 GLN A 11 REMARK 465 ASP A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 ARG A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ASP A 21 REMARK 465 TYR A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 LEU A 27 REMARK 465 LYS A 28 REMARK 465 GLN B 1 REMARK 465 GLN B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 ASP B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 ARG B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 TYR B 22 REMARK 465 ASN B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 LEU B 27 REMARK 465 LYS B 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 137 O HOH B 160 2.10 REMARK 500 O HOH A 135 O HOH A 156 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 47 O HOH A 147 6445 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 58 170.47 63.15 REMARK 500 MET A 72 56.09 -105.60 REMARK 500 ASN A 73 58.57 -46.99 REMARK 500 ALA A 74 139.03 -39.48 REMARK 500 ASN A 88 54.12 -151.40 REMARK 500 ASP A 111 168.12 -41.90 REMARK 500 GLN B 46 -13.72 -47.17 REMARK 500 ASP B 47 -77.00 -81.19 REMARK 500 ASN B 58 -174.77 60.33 REMARK 500 MET B 72 -68.90 -131.16 REMARK 500 ASN B 88 46.80 176.53 REMARK 500 ASP B 112 -76.42 -42.72 REMARK 500 SER B 114 46.81 -70.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 72 ASN A 73 -148.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QCW RELATED DB: PDB DBREF 2QCW A 1 132 UNP P22004 BMP6_HUMAN 382 513 DBREF 2QCW B 1 132 UNP P22004 BMP6_HUMAN 382 513 SEQRES 1 A 132 GLN GLN SER ARG ASN ARG SER THR GLN SER GLN ASP VAL SEQRES 2 A 132 ALA ARG VAL SER SER ALA SER ASP TYR ASN SER SER GLU SEQRES 3 A 132 LEU LYS THR ALA CYS ARG LYS HIS GLU LEU TYR VAL SER SEQRES 4 A 132 PHE GLN ASP LEU GLY TRP GLN ASP TRP ILE ILE ALA PRO SEQRES 5 A 132 LYS GLY TYR ALA ALA ASN TYR CYS ASP GLY GLU CYS SER SEQRES 6 A 132 PHE PRO LEU ASN ALA HIS MET ASN ALA THR ASN HIS ALA SEQRES 7 A 132 ILE VAL GLN THR LEU VAL HIS LEU MET ASN PRO GLU TYR SEQRES 8 A 132 VAL PRO LYS PRO CYS CYS ALA PRO THR LYS LEU ASN ALA SEQRES 9 A 132 ILE SER VAL LEU TYR PHE ASP ASP ASN SER ASN VAL ILE SEQRES 10 A 132 LEU LYS LYS TYR ARG ASN MET VAL VAL ARG ALA CYS GLY SEQRES 11 A 132 CYS HIS SEQRES 1 B 132 GLN GLN SER ARG ASN ARG SER THR GLN SER GLN ASP VAL SEQRES 2 B 132 ALA ARG VAL SER SER ALA SER ASP TYR ASN SER SER GLU SEQRES 3 B 132 LEU LYS THR ALA CYS ARG LYS HIS GLU LEU TYR VAL SER SEQRES 4 B 132 PHE GLN ASP LEU GLY TRP GLN ASP TRP ILE ILE ALA PRO SEQRES 5 B 132 LYS GLY TYR ALA ALA ASN TYR CYS ASP GLY GLU CYS SER SEQRES 6 B 132 PHE PRO LEU ASN ALA HIS MET ASN ALA THR ASN HIS ALA SEQRES 7 B 132 ILE VAL GLN THR LEU VAL HIS LEU MET ASN PRO GLU TYR SEQRES 8 B 132 VAL PRO LYS PRO CYS CYS ALA PRO THR LYS LEU ASN ALA SEQRES 9 B 132 ILE SER VAL LEU TYR PHE ASP ASP ASN SER ASN VAL ILE SEQRES 10 B 132 LEU LYS LYS TYR ARG ASN MET VAL VAL ARG ALA CYS GLY SEQRES 11 B 132 CYS HIS FORMUL 3 HOH *65(H2 O) HELIX 1 1 PHE A 40 GLY A 44 1 5 HELIX 2 2 THR A 75 ASN A 88 1 14 HELIX 3 3 THR B 75 MET B 87 1 13 SHEET 1 A 2 ARG A 32 HIS A 34 0 SHEET 2 A 2 TYR A 59 ASP A 61 -1 O TYR A 59 N HIS A 34 SHEET 1 B 2 TYR A 37 SER A 39 0 SHEET 2 B 2 GLY A 54 ALA A 56 -1 O TYR A 55 N VAL A 38 SHEET 1 C 3 ILE A 49 ALA A 51 0 SHEET 2 C 3 CYS A 96 PHE A 110 -1 O LEU A 108 N ALA A 51 SHEET 3 C 3 VAL A 116 HIS A 132 -1 O TYR A 121 N ILE A 105 SHEET 1 D 2 ARG B 32 HIS B 34 0 SHEET 2 D 2 TYR B 59 ASP B 61 -1 O TYR B 59 N HIS B 34 SHEET 1 E 2 TYR B 37 SER B 39 0 SHEET 2 E 2 GLY B 54 ALA B 56 -1 O TYR B 55 N VAL B 38 SHEET 1 F 3 ILE B 49 ALA B 51 0 SHEET 2 F 3 CYS B 96 TYR B 109 -1 O LEU B 108 N ILE B 50 SHEET 3 F 3 ILE B 117 HIS B 132 -1 O ARG B 127 N LYS B 101 SSBOND 1 CYS A 31 CYS A 97 1555 1555 2.04 SSBOND 2 CYS A 60 CYS A 129 1555 1555 2.01 SSBOND 3 CYS A 64 CYS A 131 1555 1555 2.06 SSBOND 4 CYS A 96 CYS B 96 1555 1555 2.03 SSBOND 5 CYS B 31 CYS B 97 1555 1555 2.05 SSBOND 6 CYS B 60 CYS B 129 1555 1555 2.04 SSBOND 7 CYS B 64 CYS B 131 1555 1555 2.04 CISPEP 1 ALA A 51 PRO A 52 0 1.40 CISPEP 2 PHE A 66 PRO A 67 0 0.45 CISPEP 3 ALA B 51 PRO B 52 0 -8.98 CISPEP 4 PHE B 66 PRO B 67 0 -1.11 CRYST1 97.446 97.446 87.377 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010262 0.005925 0.000000 0.00000 SCALE2 0.000000 0.011850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011445 0.00000