PDB Short entry for 2QEP HEADER HYDROLASE 26-JUN-07 2QEP TITLE CRYSTAL STRUCTURE OF THE D1 DOMAIN OF PTPRN2 (IA2BETA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE N2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: D1 DOMAIN; COMPND 5 SYNONYM: R-PTP-N2, ISLET CELL AUTOANTIGEN-RELATED PROTEIN, ICAAR, COMPND 6 IAR, PHOGRIN; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRN2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PHAGE-RESISTANT DERIVATIVE OF BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS PTPRN2, PTPRP, PHOGRIN, IA-2 BETA, AUTOANTIGEN, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,A.BARR,I.ALFANO,G.BERRIDGE,N.BURGESS-BROWN,S.DAS, AUTHOR 2 O.FEDOROV,O.KING,F.NIESEN,S.WATT,P.SAVITSKY,E.SALAH,A.C.W.PIKE, AUTHOR 3 G.BUNKOCZI,F.VON DELFT,M.SUNDSTROM,A.EDWARDS,C.H.ARROWSMITH, AUTHOR 4 J.WEIGELT,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 7 30-AUG-23 2QEP 1 SEQADV REVDAT 6 18-OCT-17 2QEP 1 REMARK REVDAT 5 13-JUL-11 2QEP 1 VERSN REVDAT 4 09-JUN-09 2QEP 1 REVDAT REVDAT 3 24-FEB-09 2QEP 1 VERSN REVDAT 2 03-FEB-09 2QEP 1 JRNL REVDAT 1 24-JUL-07 2QEP 0 JRNL AUTH A.J.BARR,E.UGOCHUKWU,W.H.LEE,O.N.KING,P.FILIPPAKOPOULOS, JRNL AUTH 2 I.ALFANO,P.SAVITSKY,N.A.BURGESS-BROWN,S.MULLER,S.KNAPP JRNL TITL LARGE-SCALE STRUCTURAL ANALYSIS OF THE CLASSICAL HUMAN JRNL TITL 2 PROTEIN TYROSINE PHOSPHATOME. JRNL REF CELL(CAMBRIDGE,MASS.) V. 136 352 2009 JRNL REFN ISSN 0092-8674 JRNL PMID 19167335 JRNL DOI 10.1016/J.CELL.2008.11.038 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0037 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 21905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 100 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.70000 REMARK 3 B22 (A**2) : -2.97000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.629 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4522 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2869 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6175 ; 1.310 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6984 ; 0.882 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;33.720 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 663 ;15.183 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;12.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5131 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 936 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1018 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2953 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2199 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2280 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 116 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.264 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.291 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2937 ; 0.467 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1148 ; 0.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4594 ; 0.789 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1843 ; 1.069 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1581 ; 1.556 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 4 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 724 A 771 4 REMARK 3 1 B 724 B 771 4 REMARK 3 2 A 776 A 898 4 REMARK 3 2 B 776 B 898 4 REMARK 3 3 A 903 A 930 4 REMARK 3 3 B 903 B 930 4 REMARK 3 4 A 936 A 976 4 REMARK 3 4 B 936 B 976 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3422 ; 0.36 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 3422 ; 0.33 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 724 A 974 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3406 5.0593 2.7838 REMARK 3 T TENSOR REMARK 3 T11: -0.1115 T22: -0.0444 REMARK 3 T33: -0.0955 T12: 0.0184 REMARK 3 T13: -0.0123 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.9619 L22: 1.2678 REMARK 3 L33: 1.1316 L12: 0.6301 REMARK 3 L13: -0.1756 L23: -0.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: 0.1594 S13: -0.0099 REMARK 3 S21: -0.0283 S22: 0.0050 S23: 0.1193 REMARK 3 S31: 0.0830 S32: -0.0961 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 724 B 974 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3999 37.6760 -2.8659 REMARK 3 T TENSOR REMARK 3 T11: -0.0483 T22: -0.0268 REMARK 3 T33: -0.1238 T12: 0.0327 REMARK 3 T13: 0.0400 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.4172 L22: 3.0110 REMARK 3 L33: 1.2949 L12: 0.9311 REMARK 3 L13: 0.2706 L23: 0.1542 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: -0.0207 S13: -0.0974 REMARK 3 S21: 0.1193 S22: -0.0310 S23: -0.0138 REMARK 3 S31: 0.1756 S32: -0.0499 S33: 0.0143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QEP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043504. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23096 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 59.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.13900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : 0.46500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2I1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/KPO4, 0.1 M BIS-TRIS-PROPANE REMARK 280 PH 6.5, 20.0% PEG 3350, 10.0% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 65.77050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.27750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 65.77050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.27750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 714 REMARK 465 SER A 715 REMARK 465 GLU A 716 REMARK 465 GLU A 717 REMARK 465 PRO A 718 REMARK 465 VAL A 719 REMARK 465 GLN A 720 REMARK 465 SER A 721 REMARK 465 ASN A 722 REMARK 465 MET A 723 REMARK 465 ALA A 969 REMARK 465 HIS A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 465 HIS A 1017 REMARK 465 MET B 714 REMARK 465 SER B 715 REMARK 465 GLU B 716 REMARK 465 GLU B 717 REMARK 465 PRO B 718 REMARK 465 VAL B 719 REMARK 465 GLN B 720 REMARK 465 SER B 721 REMARK 465 ASN B 722 REMARK 465 MET B 723 REMARK 465 HIS B 809 REMARK 465 ALA B 969 REMARK 465 HIS B 1013 REMARK 465 HIS B 1014 REMARK 465 HIS B 1015 REMARK 465 HIS B 1016 REMARK 465 HIS B 1017 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 725 CD1 REMARK 470 LYS A 742 CG CD CE NZ REMARK 470 ARG A 744 CD NE CZ NH1 NH2 REMARK 470 LYS A 747 CG CD CE NZ REMARK 470 GLU A 750 CG CD OE1 OE2 REMARK 470 LEU A 777 CG CD1 CD2 REMARK 470 LYS A 790 NZ REMARK 470 GLU A 792 CG CD OE1 OE2 REMARK 470 HIS A 809 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 812 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 854 CD NE CZ NH1 NH2 REMARK 470 ASP A 862 CG OD1 OD2 REMARK 470 GLU A 863 CG CD OE1 OE2 REMARK 470 GLU A 883 CG CD OE1 OE2 REMARK 470 GLN A 896 CG CD OE1 NE2 REMARK 470 ARG A 921 CD NE CZ NH1 NH2 REMARK 470 LYS A 929 CD CE NZ REMARK 470 LYS A 932 CD CE NZ REMARK 470 ARG A 935 CG CD NE CZ NH1 NH2 REMARK 470 SER A 938 OG REMARK 470 LYS A 964 CG CD CE NZ REMARK 470 LYS A 970 CG CD CE NZ REMARK 470 GLU A 971 CG CD OE1 OE2 REMARK 470 ILE A 972 CD1 REMARK 470 GLN A 990 CG CD OE1 NE2 REMARK 470 LYS A 992 NZ REMARK 470 LEU A1010 CG CD1 CD2 REMARK 470 HIS A1012 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 725 CD1 REMARK 470 MET B 730 SD CE REMARK 470 ILE B 731 CG1 CG2 CD1 REMARK 470 LYS B 740 CG CD CE NZ REMARK 470 ASN B 743 CG OD1 ND2 REMARK 470 LYS B 747 CG CD CE NZ REMARK 470 GLU B 750 CG CD OE1 OE2 REMARK 470 GLN B 756 CG CD OE1 NE2 REMARK 470 GLU B 768 CG CD OE1 OE2 REMARK 470 GLU B 769 CG CD OE1 OE2 REMARK 470 LEU B 777 CG CD1 CD2 REMARK 470 LYS B 790 NZ REMARK 470 GLU B 792 CG CD OE1 OE2 REMARK 470 ASP B 808 CG OD1 OD2 REMARK 470 ARG B 812 CG CD NE CZ NH1 NH2 REMARK 470 SER B 837 OG REMARK 470 ARG B 854 CD NE CZ NH1 NH2 REMARK 470 ASP B 862 CG OD1 OD2 REMARK 470 GLU B 863 CG CD OE1 OE2 REMARK 470 GLU B 883 CG CD OE1 OE2 REMARK 470 ARG B 914 CD NE CZ NH1 NH2 REMARK 470 ARG B 921 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 928 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 932 CG CD CE NZ REMARK 470 ARG B 935 CG CD NE CZ NH1 NH2 REMARK 470 SER B 938 OG REMARK 470 LYS B 964 CG CD CE NZ REMARK 470 LYS B 967 CG CD CE NZ REMARK 470 LYS B 970 CG CD CE NZ REMARK 470 GLU B 971 CG CD OE1 OE2 REMARK 470 ILE B 972 CD1 REMARK 470 GLN B 990 CG CD OE1 NE2 REMARK 470 ILE B1009 CD1 REMARK 470 HIS B1012 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 760 16.94 -148.35 REMARK 500 ASP A 808 -90.44 -113.31 REMARK 500 ASN A 851 44.00 36.99 REMARK 500 HIS A 869 -111.96 69.47 REMARK 500 GLU A 878 116.74 -160.76 REMARK 500 ASP A 913 129.75 -37.65 REMARK 500 CYS A 945 -101.60 -140.15 REMARK 500 SER A 946 -84.95 -116.91 REMARK 500 ALA A 949 -56.26 -125.65 REMARK 500 VAL A 989 103.83 68.63 REMARK 500 ASN B 760 32.74 -141.61 REMARK 500 THR B 781 135.24 -38.39 REMARK 500 SER B 785 65.77 -157.06 REMARK 500 ALA B 803 133.40 -170.73 REMARK 500 ASN B 851 66.45 39.16 REMARK 500 HIS B 869 -109.76 57.29 REMARK 500 CYS B 882 -179.66 -171.38 REMARK 500 ARG B 914 29.30 49.31 REMARK 500 ARG B 937 64.25 -111.31 REMARK 500 SER B 938 -71.58 58.06 REMARK 500 CYS B 945 -102.90 -142.93 REMARK 500 SER B 946 -77.86 -125.74 REMARK 500 ALA B 949 -61.97 -129.94 REMARK 500 ASP B 973 83.59 -153.02 REMARK 500 VAL B 989 102.12 65.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I1Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAIN OF HUMAN PTP IA-2 DBREF 2QEP A 715 1010 UNP Q92932 PTPR2_HUMAN 715 1010 DBREF 2QEP B 715 1010 UNP Q92932 PTPR2_HUMAN 715 1010 SEQADV 2QEP MET A 714 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP ALA A 1011 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1012 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1013 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1014 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1015 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1016 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS A 1017 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP MET B 714 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP ALA B 1011 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1012 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1013 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1014 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1015 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1016 UNP Q92932 CLONING ARTIFACT SEQADV 2QEP HIS B 1017 UNP Q92932 CLONING ARTIFACT SEQRES 1 A 304 MET SER GLU GLU PRO VAL GLN SER ASN MET ASP ILE SER SEQRES 2 A 304 THR GLY HIS MET ILE LEU SER TYR MET GLU ASP HIS LEU SEQRES 3 A 304 LYS ASN LYS ASN ARG LEU GLU LYS GLU TRP GLU ALA LEU SEQRES 4 A 304 CYS ALA TYR GLN ALA GLU PRO ASN SER SER PHE VAL ALA SEQRES 5 A 304 GLN ARG GLU GLU ASN VAL PRO LYS ASN ARG SER LEU ALA SEQRES 6 A 304 VAL LEU THR TYR ASP HIS SER ARG VAL LEU LEU LYS ALA SEQRES 7 A 304 GLU ASN SER HIS SER HIS SER ASP TYR ILE ASN ALA SER SEQRES 8 A 304 PRO ILE MET ASP HIS ASP PRO ARG ASN PRO ALA TYR ILE SEQRES 9 A 304 ALA THR GLN GLY PRO LEU PRO ALA THR VAL ALA ASP PHE SEQRES 10 A 304 TRP GLN MET VAL TRP GLU SER GLY CYS VAL VAL ILE VAL SEQRES 11 A 304 MET LEU THR PRO LEU ALA GLU ASN GLY VAL ARG GLN CYS SEQRES 12 A 304 TYR HIS TYR TRP PRO ASP GLU GLY SER ASN LEU TYR HIS SEQRES 13 A 304 ILE TYR GLU VAL ASN LEU VAL SER GLU HIS ILE TRP CYS SEQRES 14 A 304 GLU ASP PHE LEU VAL ARG SER PHE TYR LEU LYS ASN LEU SEQRES 15 A 304 GLN THR ASN GLU THR ARG THR VAL THR GLN PHE HIS PHE SEQRES 16 A 304 LEU SER TRP TYR ASP ARG GLY VAL PRO SER SER SER ARG SEQRES 17 A 304 SER LEU LEU ASP PHE ARG ARG LYS VAL ASN LYS CYS TYR SEQRES 18 A 304 ARG GLY ARG SER CYS PRO ILE ILE VAL HIS CYS SER ASP SEQRES 19 A 304 GLY ALA GLY ARG SER GLY THR TYR VAL LEU ILE ASP MET SEQRES 20 A 304 VAL LEU ASN LYS MET ALA LYS GLY ALA LYS GLU ILE ASP SEQRES 21 A 304 ILE ALA ALA THR LEU GLU HIS LEU ARG ASP GLN ARG PRO SEQRES 22 A 304 GLY MET VAL GLN THR LYS GLU GLN PHE GLU PHE ALA LEU SEQRES 23 A 304 THR ALA VAL ALA GLU GLU VAL ASN ALA ILE LEU ALA HIS SEQRES 24 A 304 HIS HIS HIS HIS HIS SEQRES 1 B 304 MET SER GLU GLU PRO VAL GLN SER ASN MET ASP ILE SER SEQRES 2 B 304 THR GLY HIS MET ILE LEU SER TYR MET GLU ASP HIS LEU SEQRES 3 B 304 LYS ASN LYS ASN ARG LEU GLU LYS GLU TRP GLU ALA LEU SEQRES 4 B 304 CYS ALA TYR GLN ALA GLU PRO ASN SER SER PHE VAL ALA SEQRES 5 B 304 GLN ARG GLU GLU ASN VAL PRO LYS ASN ARG SER LEU ALA SEQRES 6 B 304 VAL LEU THR TYR ASP HIS SER ARG VAL LEU LEU LYS ALA SEQRES 7 B 304 GLU ASN SER HIS SER HIS SER ASP TYR ILE ASN ALA SER SEQRES 8 B 304 PRO ILE MET ASP HIS ASP PRO ARG ASN PRO ALA TYR ILE SEQRES 9 B 304 ALA THR GLN GLY PRO LEU PRO ALA THR VAL ALA ASP PHE SEQRES 10 B 304 TRP GLN MET VAL TRP GLU SER GLY CYS VAL VAL ILE VAL SEQRES 11 B 304 MET LEU THR PRO LEU ALA GLU ASN GLY VAL ARG GLN CYS SEQRES 12 B 304 TYR HIS TYR TRP PRO ASP GLU GLY SER ASN LEU TYR HIS SEQRES 13 B 304 ILE TYR GLU VAL ASN LEU VAL SER GLU HIS ILE TRP CYS SEQRES 14 B 304 GLU ASP PHE LEU VAL ARG SER PHE TYR LEU LYS ASN LEU SEQRES 15 B 304 GLN THR ASN GLU THR ARG THR VAL THR GLN PHE HIS PHE SEQRES 16 B 304 LEU SER TRP TYR ASP ARG GLY VAL PRO SER SER SER ARG SEQRES 17 B 304 SER LEU LEU ASP PHE ARG ARG LYS VAL ASN LYS CYS TYR SEQRES 18 B 304 ARG GLY ARG SER CYS PRO ILE ILE VAL HIS CYS SER ASP SEQRES 19 B 304 GLY ALA GLY ARG SER GLY THR TYR VAL LEU ILE ASP MET SEQRES 20 B 304 VAL LEU ASN LYS MET ALA LYS GLY ALA LYS GLU ILE ASP SEQRES 21 B 304 ILE ALA ALA THR LEU GLU HIS LEU ARG ASP GLN ARG PRO SEQRES 22 B 304 GLY MET VAL GLN THR LYS GLU GLN PHE GLU PHE ALA LEU SEQRES 23 B 304 THR ALA VAL ALA GLU GLU VAL ASN ALA ILE LEU ALA HIS SEQRES 24 B 304 HIS HIS HIS HIS HIS HET CL A 1 1 HETNAM CL CHLORIDE ION FORMUL 3 CL CL 1- FORMUL 4 HOH *39(H2 O) HELIX 1 1 ASP A 724 LEU A 739 1 16 HELIX 2 2 ASN A 741 TYR A 755 1 15 HELIX 3 3 ASN A 770 ASN A 774 5 5 HELIX 4 4 TYR A 782 ARG A 786 5 5 HELIX 5 5 LEU A 823 ALA A 825 5 3 HELIX 6 6 THR A 826 SER A 837 1 12 HELIX 7 7 SER A 919 ARG A 935 1 17 HELIX 8 8 ALA A 949 LYS A 967 1 19 HELIX 9 9 ASP A 973 ASP A 983 1 11 HELIX 10 10 THR A 991 HIS A 1012 1 22 HELIX 11 11 ASP B 724 LEU B 739 1 16 HELIX 12 12 ASN B 741 TYR B 755 1 15 HELIX 13 13 ARG B 767 ASN B 774 5 8 HELIX 14 14 LYS B 790 SER B 794 5 5 HELIX 15 15 LEU B 823 ALA B 825 5 3 HELIX 16 16 THR B 826 GLY B 838 1 13 HELIX 17 17 SER B 919 ARG B 935 1 17 HELIX 18 18 ALA B 949 LYS B 964 1 16 HELIX 19 19 ASP B 973 ARG B 985 1 13 HELIX 20 20 THR B 991 HIS B 1012 1 22 SHEET 1 A 8 ALA A 803 ILE A 806 0 SHEET 2 A 8 TYR A 816 THR A 819 -1 O TYR A 816 N ILE A 806 SHEET 3 A 8 ILE A 941 HIS A 944 1 O ILE A 941 N ILE A 817 SHEET 4 A 8 VAL A 841 MET A 844 1 N VAL A 843 O ILE A 942 SHEET 5 A 8 GLU A 899 PHE A 908 1 O PHE A 906 N MET A 844 SHEET 6 A 8 PHE A 885 ASN A 894 -1 N ARG A 888 O GLN A 905 SHEET 7 A 8 TYR A 871 CYS A 882 -1 N HIS A 879 O VAL A 887 SHEET 8 A 8 SER A 865 TYR A 868 -1 N ASN A 866 O VAL A 873 SHEET 1 B 2 ALA A 849 GLU A 850 0 SHEET 2 B 2 VAL A 853 ARG A 854 -1 O VAL A 853 N GLU A 850 SHEET 1 C 8 ALA B 803 ILE B 806 0 SHEET 2 C 8 TYR B 816 THR B 819 -1 O ALA B 818 N SER B 804 SHEET 3 C 8 ILE B 941 HIS B 944 1 O ILE B 941 N ILE B 817 SHEET 4 C 8 VAL B 841 MET B 844 1 N VAL B 843 O HIS B 944 SHEET 5 C 8 THR B 900 PHE B 908 1 O PHE B 906 N ILE B 842 SHEET 6 C 8 PHE B 885 ASN B 894 -1 N LEU B 886 O HIS B 907 SHEET 7 C 8 TYR B 871 CYS B 882 -1 N GLU B 872 O LYS B 893 SHEET 8 C 8 SER B 865 TYR B 868 -1 N TYR B 868 O TYR B 871 SHEET 1 D 2 ALA B 849 GLU B 850 0 SHEET 2 D 2 VAL B 853 ARG B 854 -1 O VAL B 853 N GLU B 850 CISPEP 1 GLU A 758 PRO A 759 0 6.63 CISPEP 2 ARG A 935 GLY A 936 0 -11.60 CISPEP 3 GLU B 758 PRO B 759 0 -2.07 CRYST1 131.541 136.555 35.752 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027971 0.00000