PDB Short entry for 2QGT HEADER TRANSCRIPTION 29-JUN-07 2QGT TITLE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN TITLE 2 COMPLEXED TO AN ETHER ESTRADIOL COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: STEROID-BINDING REGION, RESIDUES 298-554; COMPND 5 SYNONYM: ER, ESTRADIOL RECEPTOR, ER-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 14 ORGANISM_COMMON: MOUSE; SOURCE 15 ORGANISM_TAXID: 10090 KEYWDS PROTEIN-LIGAND COMPLEX, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.W.NETTLES,J.B.BRUNING,J.NOWAK,S.K.SHARMA,J.B.HAHM,Y.SHI,K.KULP, AUTHOR 2 R.B.HOCHBERG,H.ZHOU,J.A.KATZENELLENBOGEN,B.S.KATZENELLENBOGEN,Y.KIM, AUTHOR 3 A.JOACHMIAK,G.L.GREENE REVDAT 7 30-AUG-23 2QGT 1 REMARK REVDAT 6 20-OCT-21 2QGT 1 SOURCE REMARK SEQADV REVDAT 5 18-OCT-17 2QGT 1 REMARK REVDAT 4 13-JUL-11 2QGT 1 VERSN REVDAT 3 24-FEB-09 2QGT 1 VERSN REVDAT 2 01-APR-08 2QGT 1 JRNL REVDAT 1 18-MAR-08 2QGT 0 JRNL AUTH K.W.NETTLES,J.B.BRUNING,G.GIL,J.NOWAK,S.K.SHARMA,J.B.HAHM, JRNL AUTH 2 K.KULP,R.B.HOCHBERG,H.ZHOU,J.A.KATZENELLENBOGEN, JRNL AUTH 3 B.S.KATZENELLENBOGEN,Y.KIM,A.JOACHMIAK,G.L.GREENE JRNL TITL NFKAPPAB SELECTIVITY OF ESTROGEN RECEPTOR LIGANDS REVEALED JRNL TITL 2 BY COMPARATIVE CRYSTALLOGRAPHIC ANALYSES JRNL REF NAT.CHEM.BIOL. V. 4 241 2008 JRNL REFN ISSN 1552-4450 JRNL PMID 18344977 JRNL DOI 10.1038/NCHEMBIO.76 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 28251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1431 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1453 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3978 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4117 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2783 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5567 ; 1.149 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6778 ; 0.914 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 4.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;38.744 ;24.171 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;16.386 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4367 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 998 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2787 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1966 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2062 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 123 ; 0.190 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.288 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 41 ; 0.336 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 0.986 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 996 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4003 ; 1.471 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.931 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1564 ; 2.747 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): 29.0915 -1.2835 15.7110 REMARK 3 T TENSOR REMARK 3 T11: -0.0125 T22: 0.0870 REMARK 3 T33: 0.0556 T12: 0.0131 REMARK 3 T13: -0.0130 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.6421 L22: 1.3706 REMARK 3 L33: 2.1576 L12: -0.1036 REMARK 3 L13: -0.8922 L23: -0.9708 REMARK 3 S TENSOR REMARK 3 S11: -0.0965 S12: -0.2918 S13: 0.0148 REMARK 3 S21: -0.0264 S22: -0.0190 S23: -0.1886 REMARK 3 S31: 0.2853 S32: 0.5044 S33: 0.1155 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 458 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2479 2.7188 8.7762 REMARK 3 T TENSOR REMARK 3 T11: 0.0002 T22: 0.0358 REMARK 3 T33: 0.0276 T12: -0.0018 REMARK 3 T13: -0.0005 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7892 L22: 0.5327 REMARK 3 L33: 0.7246 L12: 0.0736 REMARK 3 L13: -0.4920 L23: -0.2002 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: -0.0402 S13: -0.0096 REMARK 3 S21: 0.0201 S22: -0.0169 S23: -0.0520 REMARK 3 S31: -0.0217 S32: 0.0504 S33: 0.0214 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 459 A 479 REMARK 3 ORIGIN FOR THE GROUP (A): 10.9355 -16.9129 17.7511 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: 0.0785 REMARK 3 T33: 0.1488 T12: 0.0049 REMARK 3 T13: 0.0449 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.1617 L22: 2.0741 REMARK 3 L33: 3.8642 L12: 0.1545 REMARK 3 L13: 0.4538 L23: -2.7798 REMARK 3 S TENSOR REMARK 3 S11: -0.1120 S12: 0.3657 S13: -0.6371 REMARK 3 S21: -0.0817 S22: 0.3844 S23: -0.0311 REMARK 3 S31: 0.7873 S32: 0.0039 S33: -0.2724 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 480 A 530 REMARK 3 ORIGIN FOR THE GROUP (A): 12.4351 1.6457 18.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: 0.0714 REMARK 3 T33: 0.0176 T12: -0.0009 REMARK 3 T13: 0.0005 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7009 L22: 0.1463 REMARK 3 L33: 1.6442 L12: 0.0348 REMARK 3 L13: -0.8816 L23: -0.1036 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0730 S13: 0.0230 REMARK 3 S21: 0.0149 S22: 0.0156 S23: -0.0242 REMARK 3 S31: 0.0036 S32: 0.0459 S33: -0.0513 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 531 A 548 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9686 -4.6036 -6.0924 REMARK 3 T TENSOR REMARK 3 T11: 0.0658 T22: 0.0510 REMARK 3 T33: 0.0103 T12: 0.0322 REMARK 3 T13: 0.0426 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.0149 L22: 0.0514 REMARK 3 L33: 3.8768 L12: 0.0277 REMARK 3 L13: 0.2405 L23: 0.4463 REMARK 3 S TENSOR REMARK 3 S11: 0.0317 S12: 0.1942 S13: -0.2198 REMARK 3 S21: -0.0313 S22: -0.0158 S23: -0.1245 REMARK 3 S31: 0.1661 S32: -0.2070 S33: -0.0159 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 305 B 335 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2733 0.5438 15.9351 REMARK 3 T TENSOR REMARK 3 T11: -0.0269 T22: 0.1008 REMARK 3 T33: 0.1015 T12: 0.0127 REMARK 3 T13: 0.0025 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.1609 L22: 2.0128 REMARK 3 L33: 4.0369 L12: 0.8318 REMARK 3 L13: 2.4522 L23: 1.4206 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.1984 S13: -0.1879 REMARK 3 S21: -0.0891 S22: 0.1124 S23: 0.3956 REMARK 3 S31: -0.1322 S32: -0.5255 S33: -0.1606 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 336 B 458 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3834 -3.0178 8.7574 REMARK 3 T TENSOR REMARK 3 T11: 0.0087 T22: 0.0234 REMARK 3 T33: 0.0722 T12: -0.0208 REMARK 3 T13: -0.0233 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.0411 L22: 1.5475 REMARK 3 L33: 0.8956 L12: -0.1633 REMARK 3 L13: 0.2588 L23: -0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0652 S12: -0.0132 S13: -0.0937 REMARK 3 S21: -0.1399 S22: 0.0597 S23: 0.1125 REMARK 3 S31: 0.0439 S32: -0.0912 S33: -0.1249 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 459 B 472 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9844 19.4049 15.4352 REMARK 3 T TENSOR REMARK 3 T11: 0.3305 T22: 0.2877 REMARK 3 T33: 0.3449 T12: -0.0299 REMARK 3 T13: 0.0217 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 4.0063 L22: 6.6275 REMARK 3 L33: 2.4884 L12: 5.1528 REMARK 3 L13: 3.1574 L23: 4.0611 REMARK 3 S TENSOR REMARK 3 S11: 1.5548 S12: 0.2541 S13: 0.9091 REMARK 3 S21: 1.2671 S22: -1.9066 S23: -1.0370 REMARK 3 S31: 1.0394 S32: -0.6991 S33: 0.3519 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 473 B 542 REMARK 3 ORIGIN FOR THE GROUP (A): -0.2747 0.4299 14.2513 REMARK 3 T TENSOR REMARK 3 T11: -0.0123 T22: 0.0374 REMARK 3 T33: 0.0401 T12: -0.0184 REMARK 3 T13: 0.0158 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 0.8155 L22: 1.2344 REMARK 3 L33: 1.3245 L12: -0.2139 REMARK 3 L13: 0.4086 L23: -0.0909 REMARK 3 S TENSOR REMARK 3 S11: 0.0345 S12: -0.0023 S13: -0.0069 REMARK 3 S21: -0.0903 S22: 0.0141 S23: 0.0419 REMARK 3 S31: 0.0132 S32: 0.0219 S33: -0.0485 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 543 B 548 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0554 8.1089 -2.0240 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0858 REMARK 3 T33: 0.0252 T12: 0.0071 REMARK 3 T13: 0.0375 T23: 0.0510 REMARK 3 L TENSOR REMARK 3 L11: 3.3998 L22: 15.5564 REMARK 3 L33: 3.6792 L12: 0.4091 REMARK 3 L13: -1.7602 L23: -6.7633 REMARK 3 S TENSOR REMARK 3 S11: 0.7488 S12: -0.0235 S13: 0.7261 REMARK 3 S21: -0.9000 S22: -0.9189 S23: -0.1082 REMARK 3 S31: -0.3911 S32: -0.1029 S33: 0.1701 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 688 C 697 REMARK 3 ORIGIN FOR THE GROUP (A): 27.9592 -16.5246 3.3809 REMARK 3 T TENSOR REMARK 3 T11: 0.0383 T22: -0.0060 REMARK 3 T33: 0.0945 T12: 0.0460 REMARK 3 T13: 0.0940 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 9.7495 L22: 14.8209 REMARK 3 L33: 0.3639 L12: 0.4736 REMARK 3 L13: 0.3468 L23: -1.6840 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: 0.1968 S13: 0.1326 REMARK 3 S21: -0.3258 S22: -0.1390 S23: -1.0606 REMARK 3 S31: 0.0015 S32: 0.0624 S33: 0.0465 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 687 D 698 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8308 16.5804 4.5882 REMARK 3 T TENSOR REMARK 3 T11: 0.0575 T22: 0.0624 REMARK 3 T33: 0.2212 T12: 0.0221 REMARK 3 T13: -0.0876 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 4.9865 L22: 2.1173 REMARK 3 L33: 14.4957 L12: -3.2217 REMARK 3 L13: -4.5804 L23: 2.3525 REMARK 3 S TENSOR REMARK 3 S11: -0.1071 S12: 0.2471 S13: 0.8334 REMARK 3 S21: -0.2219 S22: -0.2660 S23: -0.0927 REMARK 3 S31: -1.5287 S32: -0.6307 S33: 0.3731 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR SI REMARK 200 -111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : 0.11800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.39500 REMARK 200 R SYM FOR SHELL (I) : 0.39500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3ERD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.85400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 297 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 ARG A 300 REMARK 465 SER A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LYS A 467 REMARK 465 SER A 468 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 THR A 553 REMARK 465 SER A 554 REMARK 465 SER B 297 REMARK 465 ILE B 298 REMARK 465 LYS B 299 REMARK 465 ARG B 300 REMARK 465 SER B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 ASN B 304 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 THR B 553 REMARK 465 SER B 554 REMARK 465 LYS C 686 REMARK 465 HIS C 687 REMARK 465 SER C 698 REMARK 465 LYS D 686 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 305 OG REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 330 O HOH B 64 2.03 REMARK 500 OH TYR B 459 O HOH B 5 2.09 REMARK 500 O HOH A 38 O HOH B 34 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 460 40.03 -86.39 REMARK 500 GLU B 330 43.16 -84.78 REMARK 500 LYS B 531 11.17 -67.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EED B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EED A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QA6 RELATED DB: PDB REMARK 900 RELATED ID: 2QA8 RELATED DB: PDB REMARK 900 RELATED ID: 2QAB RELATED DB: PDB REMARK 900 RELATED ID: 2QGW RELATED DB: PDB REMARK 900 RELATED ID: 2QH6 RELATED DB: PDB DBREF 2QGT A 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 2QGT B 298 554 UNP P03372 ESR1_HUMAN 298 554 DBREF 2QGT C 686 698 UNP Q8BN74 Q8BN74_MOUSE 686 698 DBREF 2QGT D 686 698 UNP Q8BN74 Q8BN74_MOUSE 686 698 SEQADV 2QGT SER A 297 UNP P03372 EXPRESSION TAG SEQADV 2QGT SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 2QGT SER B 297 UNP P03372 EXPRESSION TAG SEQADV 2QGT SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 258 SER ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER SEQRES 2 A 258 LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA SEQRES 3 A 258 GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG SEQRES 4 A 258 PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN SEQRES 5 A 258 LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA SEQRES 6 A 258 LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP SEQRES 7 A 258 GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU SEQRES 8 A 258 MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY SEQRES 9 A 258 LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN SEQRES 10 A 258 GLN GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP SEQRES 11 A 258 MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN SEQRES 12 A 258 LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE SEQRES 13 A 258 LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR SEQRES 14 A 258 LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL SEQRES 15 A 258 LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA SEQRES 16 A 258 LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU SEQRES 17 A 258 ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SEQRES 18 A 258 SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS SEQRES 19 A 258 LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET SEQRES 20 A 258 LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 B 258 SER ILE LYS ARG SER LYS LYS ASN SER LEU ALA LEU SER SEQRES 2 B 258 LEU THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA SEQRES 3 B 258 GLU PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG SEQRES 4 B 258 PRO PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN SEQRES 5 B 258 LEU ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA SEQRES 6 B 258 LYS ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP SEQRES 7 B 258 GLN VAL HIS LEU LEU GLU CYS ALA TRP LEU GLU ILE LEU SEQRES 8 B 258 MET ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY SEQRES 9 B 258 LYS LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN SEQRES 10 B 258 GLN GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP SEQRES 11 B 258 MET LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN SEQRES 12 B 258 LEU GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE SEQRES 13 B 258 LEU LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR SEQRES 14 B 258 LEU LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL SEQRES 15 B 258 LEU ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA SEQRES 16 B 258 LYS ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU SEQRES 17 B 258 ALA GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SEQRES 18 B 258 SER ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS SEQRES 19 B 258 LYS ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET SEQRES 20 B 258 LEU ASP ALA HIS ARG LEU HIS ALA PRO THR SER SEQRES 1 C 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 1 D 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER HET EED A 701 23 HET EED B 700 23 HETNAM EED (9BETA,11ALPHA,13ALPHA,14BETA,17ALPHA)-11- HETNAM 2 EED (METHOXYMETHYL)ESTRA-1(10),2,4-TRIENE-3,17-DIOL FORMUL 5 EED 2(C20 H28 O3) FORMUL 7 HOH *134(H2 O) HELIX 1 1 LEU A 306 LEU A 310 5 5 HELIX 2 2 THR A 311 GLU A 323 1 13 HELIX 3 3 SER A 338 LYS A 362 1 25 HELIX 4 4 GLY A 366 LEU A 370 5 5 HELIX 5 5 THR A 371 MET A 396 1 26 HELIX 6 6 ASP A 411 LYS A 416 1 6 HELIX 7 7 GLY A 420 ASN A 439 1 20 HELIX 8 8 GLN A 441 SER A 456 1 16 HELIX 9 9 LEU A 469 ALA A 493 1 25 HELIX 10 10 THR A 496 LYS A 531 1 36 HELIX 11 11 SER A 537 ALA A 546 1 10 HELIX 12 12 THR B 311 GLU B 323 1 13 HELIX 13 13 SER B 338 LYS B 362 1 25 HELIX 14 14 GLY B 366 LEU B 370 5 5 HELIX 15 15 THR B 371 MET B 396 1 26 HELIX 16 16 ARG B 412 LYS B 416 1 5 HELIX 17 17 MET B 421 ASN B 439 1 19 HELIX 18 18 GLN B 441 SER B 456 1 16 HELIX 19 19 GLY B 457 PHE B 461 5 5 HELIX 20 20 LEU B 469 ALA B 493 1 25 HELIX 21 21 THR B 496 LYS B 531 1 36 HELIX 22 22 SER B 537 ALA B 546 1 10 HELIX 23 23 LYS C 688 SER C 697 1 10 HELIX 24 24 LYS D 688 ASP D 696 1 9 SHEET 1 A 2 LEU A 402 ALA A 405 0 SHEET 2 A 2 LEU A 408 LEU A 410 -1 O LEU A 410 N LEU A 402 SHEET 1 B 2 LYS B 401 ALA B 405 0 SHEET 2 B 2 LEU B 408 ASP B 411 -1 O LEU B 410 N LEU B 402 SITE 1 AC1 10 MET B 343 LEU B 346 THR B 347 ALA B 350 SITE 2 AC1 10 GLU B 353 TRP B 383 ARG B 394 PHE B 404 SITE 3 AC1 10 HIS B 524 LEU B 525 SITE 1 AC2 9 MET A 343 LEU A 346 THR A 347 ALA A 350 SITE 2 AC2 9 GLU A 353 ARG A 394 PHE A 404 HIS A 524 SITE 3 AC2 9 LEU A 525 CRYST1 58.171 83.708 56.007 90.00 108.45 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017191 0.000000 0.005734 0.00000 SCALE2 0.000000 0.011946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018822 0.00000