PDB Short entry for 2QH5 HEADER ISOMERASE 29-JUN-07 2QH5 TITLE CRYSTAL STRUCTURE OF MANNOSE-6-PHOSPHATE ISOMERASE FROM HELICOBACTER TITLE 2 PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-6-PHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: PMI, ALGA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 ATCC: 700392; SOURCE 6 GENE: HP_0043; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS ISOMERASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NYSGRC, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NEW YORK KEYWDS 3 SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,U.RAMAGOPAL,R.TORO,J.M.SAUDER,M.DICKEY,M.IIZUKA, AUTHOR 2 M.MALETIC,S.R.WASSERMAN,J.KOSS,S.K.BURLEY,S.C.ALMO,NEW YORK SGX AUTHOR 3 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 7 21-FEB-24 2QH5 1 REMARK REVDAT 6 03-FEB-21 2QH5 1 AUTHOR JRNL SEQADV REVDAT 5 14-NOV-18 2QH5 1 AUTHOR REVDAT 4 18-OCT-17 2QH5 1 REMARK REVDAT 3 13-JUL-11 2QH5 1 VERSN REVDAT 2 24-FEB-09 2QH5 1 VERSN REVDAT 1 17-JUL-07 2QH5 0 JRNL AUTH Y.PATSKOVSKY,U.RAMAGOPAL,R.TORO,J.M.SAUDER,M.IIZUKA, JRNL AUTH 2 M.DICKEY,M.MALETIC,S.R.WASSERMAN,J.KOSS,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF MANNOSE-6-PHOSPHATE ISOMERASE FROM JRNL TITL 2 HELICOBACTER PYLORI. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0034 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.4210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.59000 REMARK 3 B22 (A**2) : 1.26000 REMARK 3 B33 (A**2) : -4.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.335 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.249 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.760 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4177 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5609 ; 1.173 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 6.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 186 ;41.177 ;25.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 829 ;19.571 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3039 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1800 ; 0.170 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2809 ; 0.314 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.194 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.142 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.197 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2610 ; 3.520 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4103 ; 5.520 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1719 ; 5.787 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1500 ; 8.244 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 222 1 REMARK 3 1 B 1 B 222 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1623 ; 0.34 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 1623 ; 6.72 ; 2.50 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 230 A 266 1 REMARK 3 1 B 230 B 266 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 313 ; 0.33 ; 0.05 REMARK 3 TIGHT THERMAL 2 B (A**2): 313 ; 7.82 ; 2.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77000 REMARK 200 R SYM FOR SHELL (I) : 0.63000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 25% PEG 3350, 0.2M REMARK 280 SODIUM CHLORIDE, PH 5.5, 10% GLYCEROL, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.91450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.97950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.20750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.97950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.91450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.20750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ARG A 15 REMARK 465 LEU A 16 REMARK 465 TRP A 17 REMARK 465 PRO A 18 REMARK 465 LEU A 19 REMARK 465 SER A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 LEU A 23 REMARK 465 LEU A 267 REMARK 465 GLY A 268 REMARK 465 ASN A 269 REMARK 465 PHE A 270 REMARK 465 ASN A 271 REMARK 465 ALA A 272 REMARK 465 LEU A 273 REMARK 465 PHE A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 ALA A 278 REMARK 465 ASN A 279 REMARK 465 GLU A 280 REMARK 465 PRO A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 ASN A 284 REMARK 465 VAL A 285 REMARK 465 SER A 286 REMARK 465 LEU A 287 REMARK 465 ASN A 288 REMARK 465 GLN A 289 REMARK 465 THR A 290 REMARK 465 PRO A 291 REMARK 465 VAL A 292 REMARK 465 PHE A 293 REMARK 465 ALA A 294 REMARK 465 LYS A 295 REMARK 465 GLU A 296 REMARK 465 SER A 297 REMARK 465 GLU A 298 REMARK 465 GLU A 299 REMARK 465 GLY A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 GLY B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 ARG B 15 REMARK 465 LEU B 16 REMARK 465 TRP B 17 REMARK 465 PRO B 18 REMARK 465 LEU B 19 REMARK 465 LEU B 267 REMARK 465 GLY B 268 REMARK 465 ASN B 269 REMARK 465 PHE B 270 REMARK 465 ASN B 271 REMARK 465 ALA B 272 REMARK 465 LEU B 273 REMARK 465 PHE B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 ALA B 277 REMARK 465 ALA B 278 REMARK 465 ASN B 279 REMARK 465 GLU B 280 REMARK 465 PRO B 281 REMARK 465 LYS B 282 REMARK 465 GLU B 283 REMARK 465 ASN B 284 REMARK 465 VAL B 285 REMARK 465 SER B 286 REMARK 465 LEU B 287 REMARK 465 ASN B 288 REMARK 465 GLN B 289 REMARK 465 THR B 290 REMARK 465 PRO B 291 REMARK 465 VAL B 292 REMARK 465 PHE B 293 REMARK 465 ALA B 294 REMARK 465 LYS B 295 REMARK 465 GLU B 296 REMARK 465 SER B 297 REMARK 465 GLU B 298 REMARK 465 GLU B 299 REMARK 465 GLY B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 43.15 -82.14 REMARK 500 HIS A 34 -6.65 65.32 REMARK 500 ASN A 87 173.97 71.70 REMARK 500 ASP A 111 38.37 -85.77 REMARK 500 LEU A 159 -50.75 -144.42 REMARK 500 LYS A 167 77.72 50.34 REMARK 500 GLU A 225 -53.29 66.11 REMARK 500 LEU A 248 -47.99 -133.86 REMARK 500 ASN A 261 74.82 -112.72 REMARK 500 ALA A 262 19.60 -140.99 REMARK 500 ASN B 87 -177.17 72.94 REMARK 500 ASP B 144 -60.85 -104.07 REMARK 500 PRO B 146 82.15 -66.92 REMARK 500 LEU B 159 -53.95 -135.25 REMARK 500 LYS B 167 91.07 42.06 REMARK 500 PHE B 191 148.85 178.00 REMARK 500 ASN B 261 71.39 -107.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10054E RELATED DB: TARGETDB DBREF 2QH5 A 2 298 UNP O24884 O24884_HELPY 2 298 DBREF 2QH5 B 2 298 UNP O24884 O24884_HELPY 2 298 SEQADV 2QH5 MET A -1 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 SER A 0 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 LEU A 1 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 GLU A 299 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 GLY A 300 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 301 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 302 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 303 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 304 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 305 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS A 306 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 MET B -1 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 SER B 0 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 LEU B 1 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 GLU B 299 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 GLY B 300 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 301 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 302 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 303 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 304 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 305 UNP O24884 CLONING ARTIFACT SEQADV 2QH5 HIS B 306 UNP O24884 CLONING ARTIFACT SEQRES 1 A 308 MET SER LEU LYS ILE LYS ASN ILE LEU LEU SER GLY GLY SEQRES 2 A 308 SER GLY LYS ARG LEU TRP PRO LEU SER ARG SER LEU TYR SEQRES 3 A 308 PRO LYS GLN PHE LEU LYS LEU PHE ASP HIS LYS SER LEU SEQRES 4 A 308 PHE GLU LEU SER PHE LYS ARG ASN ALA SER LEU VAL ASP SEQRES 5 A 308 GLU THR LEU ILE VAL CYS ASN GLU LYS HIS TYR PHE LEU SEQRES 6 A 308 ALA LEU GLU GLU ILE LYS ASN GLU ILE LYS ASN LYS SER SEQRES 7 A 308 VAL GLY PHE LEU LEU GLU SER LEU SER LYS ASN THR ALA SEQRES 8 A 308 ASN ALA ILE ALA LEU SER ALA LEU MET SER ASP LYS GLU SEQRES 9 A 308 ASP LEU LEU ILE VAL THR PRO SER ASP HIS LEU ILE LYS SEQRES 10 A 308 ASP LEU GLN ALA TYR GLU ASN ALA ILE LYS LYS ALA ILE SEQRES 11 A 308 ASP LEU ALA GLN LYS GLY PHE LEU VAL THR PHE GLY VAL SEQRES 12 A 308 SER ILE ASP LYS PRO ASN THR GLU PHE GLY TYR ILE GLU SEQRES 13 A 308 SER PRO ASN GLY LEU ASP VAL LYS ARG PHE ILE GLU LYS SEQRES 14 A 308 PRO SER LEU ASP LYS ALA ILE GLU PHE GLN LYS SER GLY SEQRES 15 A 308 GLY PHE TYR PHE ASN SER GLY MET PHE VAL PHE GLN ALA SEQRES 16 A 308 GLY VAL PHE LEU ASP GLU LEU LYS LYS HIS ALA PRO THR SEQRES 17 A 308 ILE LEU LYS GLY CYS GLU ARG ALA PHE GLU SER LEU GLU SEQRES 18 A 308 ASN ALA TYR PHE PHE GLU LYS LYS ILE ALA ARG LEU SER SEQRES 19 A 308 GLU LYS SER MET GLN ASP LEU GLU ASP MET SER ILE ASP SEQRES 20 A 308 ILE ALA LEU MET GLN GLN SER HIS LYS ILE LYS MET VAL SEQRES 21 A 308 GLU LEU ASN ALA LYS TRP SER ASP LEU GLY ASN PHE ASN SEQRES 22 A 308 ALA LEU PHE GLU GLU ALA ALA ASN GLU PRO LYS GLU ASN SEQRES 23 A 308 VAL SER LEU ASN GLN THR PRO VAL PHE ALA LYS GLU SER SEQRES 24 A 308 GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 308 MET SER LEU LYS ILE LYS ASN ILE LEU LEU SER GLY GLY SEQRES 2 B 308 SER GLY LYS ARG LEU TRP PRO LEU SER ARG SER LEU TYR SEQRES 3 B 308 PRO LYS GLN PHE LEU LYS LEU PHE ASP HIS LYS SER LEU SEQRES 4 B 308 PHE GLU LEU SER PHE LYS ARG ASN ALA SER LEU VAL ASP SEQRES 5 B 308 GLU THR LEU ILE VAL CYS ASN GLU LYS HIS TYR PHE LEU SEQRES 6 B 308 ALA LEU GLU GLU ILE LYS ASN GLU ILE LYS ASN LYS SER SEQRES 7 B 308 VAL GLY PHE LEU LEU GLU SER LEU SER LYS ASN THR ALA SEQRES 8 B 308 ASN ALA ILE ALA LEU SER ALA LEU MET SER ASP LYS GLU SEQRES 9 B 308 ASP LEU LEU ILE VAL THR PRO SER ASP HIS LEU ILE LYS SEQRES 10 B 308 ASP LEU GLN ALA TYR GLU ASN ALA ILE LYS LYS ALA ILE SEQRES 11 B 308 ASP LEU ALA GLN LYS GLY PHE LEU VAL THR PHE GLY VAL SEQRES 12 B 308 SER ILE ASP LYS PRO ASN THR GLU PHE GLY TYR ILE GLU SEQRES 13 B 308 SER PRO ASN GLY LEU ASP VAL LYS ARG PHE ILE GLU LYS SEQRES 14 B 308 PRO SER LEU ASP LYS ALA ILE GLU PHE GLN LYS SER GLY SEQRES 15 B 308 GLY PHE TYR PHE ASN SER GLY MET PHE VAL PHE GLN ALA SEQRES 16 B 308 GLY VAL PHE LEU ASP GLU LEU LYS LYS HIS ALA PRO THR SEQRES 17 B 308 ILE LEU LYS GLY CYS GLU ARG ALA PHE GLU SER LEU GLU SEQRES 18 B 308 ASN ALA TYR PHE PHE GLU LYS LYS ILE ALA ARG LEU SER SEQRES 19 B 308 GLU LYS SER MET GLN ASP LEU GLU ASP MET SER ILE ASP SEQRES 20 B 308 ILE ALA LEU MET GLN GLN SER HIS LYS ILE LYS MET VAL SEQRES 21 B 308 GLU LEU ASN ALA LYS TRP SER ASP LEU GLY ASN PHE ASN SEQRES 22 B 308 ALA LEU PHE GLU GLU ALA ALA ASN GLU PRO LYS GLU ASN SEQRES 23 B 308 VAL SER LEU ASN GLN THR PRO VAL PHE ALA LYS GLU SER SEQRES 24 B 308 GLU GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *96(H2 O) HELIX 1 1 PRO A 25 LEU A 29 5 5 HELIX 2 2 SER A 36 SER A 47 1 12 HELIX 3 3 HIS A 60 ILE A 68 1 9 HELIX 4 4 LYS A 86 MET A 98 1 13 HELIX 5 5 ASP A 116 LYS A 133 1 18 HELIX 6 6 SER A 169 GLY A 180 1 12 HELIX 7 7 ALA A 193 ALA A 204 1 12 HELIX 8 8 ALA A 204 PHE A 215 1 12 HELIX 9 9 GLU A 216 LEU A 218 5 3 HELIX 10 10 SER A 232 ASP A 238 1 7 HELIX 11 11 SER A 243 LEU A 248 1 6 HELIX 12 12 PRO B 25 LEU B 29 5 5 HELIX 13 13 SER B 36 SER B 47 1 12 HELIX 14 14 HIS B 60 ILE B 68 1 9 HELIX 15 15 ASN B 87 MET B 98 1 12 HELIX 16 16 ASP B 116 GLN B 132 1 17 HELIX 17 17 SER B 169 GLY B 180 1 12 HELIX 18 18 ALA B 193 ALA B 204 1 12 HELIX 19 19 ALA B 204 SER B 217 1 14 HELIX 20 20 SER B 232 GLN B 237 1 6 HELIX 21 21 SER B 243 LEU B 248 1 6 SHEET 1 A 9 ARG A 163 GLU A 166 0 SHEET 2 A 9 GLY A 151 GLU A 154 -1 N TYR A 152 O ILE A 165 SHEET 3 A 9 PHE A 182 GLN A 192 -1 O ASN A 185 N GLY A 151 SHEET 4 A 9 LEU A 104 PRO A 109 -1 N VAL A 107 O PHE A 189 SHEET 5 A 9 ILE A 3 LEU A 8 1 N LYS A 4 O ILE A 106 SHEET 6 A 9 GLU A 51 ASN A 57 1 O LEU A 53 N ASN A 5 SHEET 7 A 9 SER A 76 GLU A 82 1 O LEU A 80 N ILE A 54 SHEET 8 A 9 ILE A 228 LEU A 231 1 O ALA A 229 N LEU A 81 SHEET 9 A 9 GLU A 219 ALA A 221 -1 N GLU A 219 O ARG A 230 SHEET 1 B 5 ARG A 163 GLU A 166 0 SHEET 2 B 5 GLY A 151 GLU A 154 -1 N TYR A 152 O ILE A 165 SHEET 3 B 5 PHE A 182 GLN A 192 -1 O ASN A 185 N GLY A 151 SHEET 4 B 5 LEU A 136 SER A 142 -1 N VAL A 141 O PHE A 184 SHEET 5 B 5 ILE A 255 GLU A 259 1 O LYS A 256 N THR A 138 SHEET 1 C 9 ARG B 163 ILE B 165 0 SHEET 2 C 9 TYR B 152 GLU B 154 -1 N TYR B 152 O ILE B 165 SHEET 3 C 9 PHE B 182 GLN B 192 -1 O TYR B 183 N ILE B 153 SHEET 4 C 9 LEU B 104 PRO B 109 -1 N VAL B 107 O PHE B 189 SHEET 5 C 9 ILE B 3 LEU B 8 1 N LYS B 4 O LEU B 104 SHEET 6 C 9 GLU B 51 ASN B 57 1 O LEU B 53 N ASN B 5 SHEET 7 C 9 SER B 76 GLU B 82 1 O GLY B 78 N THR B 52 SHEET 8 C 9 LYS B 227 LEU B 231 1 O LYS B 227 N PHE B 79 SHEET 9 C 9 GLU B 219 TYR B 222 -1 N ALA B 221 O ILE B 228 SHEET 1 D 5 ARG B 163 ILE B 165 0 SHEET 2 D 5 TYR B 152 GLU B 154 -1 N TYR B 152 O ILE B 165 SHEET 3 D 5 PHE B 182 GLN B 192 -1 O TYR B 183 N ILE B 153 SHEET 4 D 5 LEU B 136 VAL B 141 -1 N VAL B 141 O PHE B 184 SHEET 5 D 5 ILE B 255 GLU B 259 1 O LYS B 256 N THR B 138 CRYST1 57.829 66.415 163.959 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017292 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006099 0.00000