PDB Short entry for 2QJ3 HEADER TRANSFERASE 06-JUL-07 2QJ3 TITLE MYCOBACTERIUM TUBERCULOSIS FABD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MCT; COMPND 5 EC: 2.3.1.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FABD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS MALONYL-COA, FATTY ACID SYNTHASE, MYCOLIC ACIDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.GHADBANE,A.K.BROWN,L.KREMER,G.S.BESRA,K.FUTTERER REVDAT 4 13-JUL-11 2QJ3 1 VERSN REVDAT 3 24-FEB-09 2QJ3 1 VERSN REVDAT 2 06-NOV-07 2QJ3 1 JRNL REVDAT 1 04-SEP-07 2QJ3 0 JRNL AUTH H.GHADBANE,A.K.BROWN,L.KREMER,G.S.BESRA,K.FUTTERER JRNL TITL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS MTFABD, A JRNL TITL 2 MALONYL-COA:ACYL CARRIER PROTEIN TRANSACYLASE (MCAT). JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 63 831 2007 JRNL REFN ESSN 1744-3091 JRNL PMID 17909282 JRNL DOI 10.1107/S1744309107042455 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1266 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.414 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.304 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.916 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4622 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6313 ; 1.206 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 5.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;34.708 ;24.096 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;20.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.928 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 773 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3462 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2119 ; 0.215 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3160 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.328 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3203 ; 0.304 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5003 ; 0.546 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 0.817 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1310 ; 1.454 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 78.3676 22.4721 29.7489 REMARK 3 T TENSOR REMARK 3 T11: -0.2253 T22: -0.1667 REMARK 3 T33: -0.2607 T12: 0.0233 REMARK 3 T13: 0.0546 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 2.4078 L22: 1.7694 REMARK 3 L33: 2.0606 L12: 0.5395 REMARK 3 L13: 0.5840 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: -0.5782 S13: 0.1488 REMARK 3 S21: 0.2440 S22: -0.0141 S23: 0.0827 REMARK 3 S31: 0.0868 S32: 0.1393 S33: -0.0904 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 302 REMARK 3 ORIGIN FOR THE GROUP (A): 114.7952 22.6711 12.4821 REMARK 3 T TENSOR REMARK 3 T11: -0.1690 T22: -0.3231 REMARK 3 T33: -0.2661 T12: -0.0302 REMARK 3 T13: -0.0601 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.6979 L22: 2.5897 REMARK 3 L33: 1.4519 L12: 0.1854 REMARK 3 L13: 0.0376 L23: 0.2617 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.1850 S13: -0.0245 REMARK 3 S21: 0.4271 S22: -0.0288 S23: -0.2226 REMARK 3 S31: -0.0380 S32: 0.0054 S33: -0.0622 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QJ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992,1.486 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : CYLINDRICAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18818 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : 0.09000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.00 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : 0.34000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-12% PEG MME 2000, 0.1 M TRIS-HCL PH REMARK 280 8.0-8.5, 5-10 MM NICL2. , VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.99333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.99667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.99333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.99667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.99333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 31.99667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 63.99333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.99667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 80 CG CD1 CD2 REMARK 470 ARG B 183 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 11 15.42 -153.55 REMARK 500 LEU A 44 -0.42 -59.77 REMARK 500 THR A 46 -86.53 -97.40 REMARK 500 ASP A 55 103.29 -161.89 REMARK 500 SER A 91 -104.76 53.40 REMARK 500 PRO A 128 98.42 -60.08 REMARK 500 PRO A 153 84.30 -68.27 REMARK 500 ALA A 186 91.66 -65.03 REMARK 500 PHE A 197 5.36 -64.09 REMARK 500 ASN A 211 24.76 -75.51 REMARK 500 ASP A 226 -2.27 -143.90 REMARK 500 GLU A 298 47.75 -76.77 REMARK 500 GLU B 14 -57.72 -14.44 REMARK 500 THR B 46 -92.34 -92.73 REMARK 500 THR B 54 35.74 -81.58 REMARK 500 SER B 91 -118.86 59.15 REMARK 500 ALA B 186 98.64 -61.09 REMARK 500 ASN B 211 48.79 -89.44 REMARK 500 ARG B 249 67.69 -112.87 REMARK 500 GLU B 298 -3.69 -57.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 135 GLY A 136 -147.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 801 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B -17 OG REMARK 620 2 HIS A -14 NE2 115.8 REMARK 620 3 HIS A -11 NE2 154.3 87.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 804 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B -15 NE2 REMARK 620 2 HIS B -13 NE2 92.5 REMARK 620 3 HIS A -15 NE2 99.5 98.6 REMARK 620 4 HIS A -13 NE2 93.5 174.0 80.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 805 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B -14 NE2 REMARK 620 2 HIS B -11 NE2 83.2 REMARK 620 3 SER A -17 OG 127.9 148.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 802 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B -12 NE2 REMARK 620 2 HIS B -10 NE2 89.6 REMARK 620 3 HIS B 0 NE2 98.5 89.5 REMARK 620 4 ASP B 84 OD1 82.0 171.2 89.3 REMARK 620 5 ASP A 216 OD2 78.8 95.5 174.2 85.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 803 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 216 OD2 REMARK 620 2 HIS A -12 NE2 82.1 REMARK 620 3 HIS A 0 NE2 167.9 88.6 REMARK 620 4 ASP A 84 OD1 86.6 80.0 84.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 805 DBREF 2QJ3 A 1 302 UNP P63458 FABD_MYCTU 1 302 DBREF 2QJ3 B 1 302 UNP P63458 FABD_MYCTU 1 302 SEQADV 2QJ3 MET A -19 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY A -18 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER A -17 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER A -16 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -15 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -14 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -13 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -12 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -11 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A -10 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER A -9 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER A -8 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY A -7 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 LEU A -6 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 VAL A -5 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 PRO A -4 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 ARG A -3 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY A -2 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER A -1 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS A 0 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 MET B -19 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY B -18 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER B -17 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER B -16 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -15 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -14 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -13 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -12 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -11 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B -10 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER B -9 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER B -8 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY B -7 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 LEU B -6 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 VAL B -5 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 PRO B -4 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 ARG B -3 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 GLY B -2 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 SER B -1 UNP P63458 EXPRESSION TAG SEQADV 2QJ3 HIS B 0 UNP P63458 EXPRESSION TAG SEQRES 1 A 322 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 322 LEU VAL PRO ARG GLY SER HIS MET ILE ALA LEU LEU ALA SEQRES 3 A 322 PRO GLY GLN GLY SER GLN THR GLU GLY MET LEU SER PRO SEQRES 4 A 322 TRP LEU GLN LEU PRO GLY ALA ALA ASP GLN ILE ALA ALA SEQRES 5 A 322 TRP SER LYS ALA ALA ASP LEU ASP LEU ALA ARG LEU GLY SEQRES 6 A 322 THR THR ALA SER THR GLU GLU ILE THR ASP THR ALA VAL SEQRES 7 A 322 ALA GLN PRO LEU ILE VAL ALA ALA THR LEU LEU ALA HIS SEQRES 8 A 322 GLN GLU LEU ALA ARG ARG CYS VAL LEU ALA GLY LYS ASP SEQRES 9 A 322 VAL ILE VAL ALA GLY HIS SER VAL GLY GLU ILE ALA ALA SEQRES 10 A 322 TYR ALA ILE ALA GLY VAL ILE ALA ALA ASP ASP ALA VAL SEQRES 11 A 322 ALA LEU ALA ALA THR ARG GLY ALA GLU MET ALA LYS ALA SEQRES 12 A 322 CYS ALA THR GLU PRO THR GLY MET SER ALA VAL LEU GLY SEQRES 13 A 322 GLY ASP GLU THR GLU VAL LEU SER ARG LEU GLU GLN LEU SEQRES 14 A 322 ASP LEU VAL PRO ALA ASN ARG ASN ALA ALA GLY GLN ILE SEQRES 15 A 322 VAL ALA ALA GLY ARG LEU THR ALA LEU GLU LYS LEU ALA SEQRES 16 A 322 GLU ASP PRO PRO ALA LYS ALA ARG VAL ARG ALA LEU GLY SEQRES 17 A 322 VAL ALA GLY ALA PHE HIS THR GLU PHE MET ALA PRO ALA SEQRES 18 A 322 LEU ASP GLY PHE ALA ALA ALA ALA ALA ASN ILE ALA THR SEQRES 19 A 322 ALA ASP PRO THR ALA THR LEU LEU SER ASN ARG ASP GLY SEQRES 20 A 322 LYS PRO VAL THR SER ALA ALA ALA ALA MET ASP THR LEU SEQRES 21 A 322 VAL SER GLN LEU THR GLN PRO VAL ARG TRP ASP LEU CYS SEQRES 22 A 322 THR ALA THR LEU ARG GLU HIS THR VAL THR ALA ILE VAL SEQRES 23 A 322 GLU PHE PRO PRO ALA GLY THR LEU SER GLY ILE ALA LYS SEQRES 24 A 322 ARG GLU LEU ARG GLY VAL PRO ALA ARG ALA VAL LYS SER SEQRES 25 A 322 PRO ALA ASP LEU ASP GLU LEU ALA ASN LEU SEQRES 1 B 322 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 322 LEU VAL PRO ARG GLY SER HIS MET ILE ALA LEU LEU ALA SEQRES 3 B 322 PRO GLY GLN GLY SER GLN THR GLU GLY MET LEU SER PRO SEQRES 4 B 322 TRP LEU GLN LEU PRO GLY ALA ALA ASP GLN ILE ALA ALA SEQRES 5 B 322 TRP SER LYS ALA ALA ASP LEU ASP LEU ALA ARG LEU GLY SEQRES 6 B 322 THR THR ALA SER THR GLU GLU ILE THR ASP THR ALA VAL SEQRES 7 B 322 ALA GLN PRO LEU ILE VAL ALA ALA THR LEU LEU ALA HIS SEQRES 8 B 322 GLN GLU LEU ALA ARG ARG CYS VAL LEU ALA GLY LYS ASP SEQRES 9 B 322 VAL ILE VAL ALA GLY HIS SER VAL GLY GLU ILE ALA ALA SEQRES 10 B 322 TYR ALA ILE ALA GLY VAL ILE ALA ALA ASP ASP ALA VAL SEQRES 11 B 322 ALA LEU ALA ALA THR ARG GLY ALA GLU MET ALA LYS ALA SEQRES 12 B 322 CYS ALA THR GLU PRO THR GLY MET SER ALA VAL LEU GLY SEQRES 13 B 322 GLY ASP GLU THR GLU VAL LEU SER ARG LEU GLU GLN LEU SEQRES 14 B 322 ASP LEU VAL PRO ALA ASN ARG ASN ALA ALA GLY GLN ILE SEQRES 15 B 322 VAL ALA ALA GLY ARG LEU THR ALA LEU GLU LYS LEU ALA SEQRES 16 B 322 GLU ASP PRO PRO ALA LYS ALA ARG VAL ARG ALA LEU GLY SEQRES 17 B 322 VAL ALA GLY ALA PHE HIS THR GLU PHE MET ALA PRO ALA SEQRES 18 B 322 LEU ASP GLY PHE ALA ALA ALA ALA ALA ASN ILE ALA THR SEQRES 19 B 322 ALA ASP PRO THR ALA THR LEU LEU SER ASN ARG ASP GLY SEQRES 20 B 322 LYS PRO VAL THR SER ALA ALA ALA ALA MET ASP THR LEU SEQRES 21 B 322 VAL SER GLN LEU THR GLN PRO VAL ARG TRP ASP LEU CYS SEQRES 22 B 322 THR ALA THR LEU ARG GLU HIS THR VAL THR ALA ILE VAL SEQRES 23 B 322 GLU PHE PRO PRO ALA GLY THR LEU SER GLY ILE ALA LYS SEQRES 24 B 322 ARG GLU LEU ARG GLY VAL PRO ALA ARG ALA VAL LYS SER SEQRES 25 B 322 PRO ALA ASP LEU ASP GLU LEU ALA ASN LEU HET NI B 801 1 HET NI B 802 1 HET NI B 803 1 HET NI B 804 1 HET NI B 805 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI 5(NI 2+) FORMUL 8 HOH *43(H2 O) HELIX 1 1 LEU A 17 GLN A 22 1 6 HELIX 2 2 GLY A 25 ASP A 38 1 14 HELIX 3 3 ASP A 40 THR A 46 1 7 HELIX 4 4 SER A 49 THR A 54 1 6 HELIX 5 5 ASP A 55 ARG A 77 1 23 HELIX 6 6 VAL A 92 ALA A 101 1 10 HELIX 7 7 ALA A 105 ALA A 125 1 21 HELIX 8 8 ASP A 138 LEU A 149 1 12 HELIX 9 9 LEU A 168 ASP A 177 1 10 HELIX 10 10 THR A 195 ALA A 199 5 5 HELIX 11 11 PRO A 200 ASN A 211 1 12 HELIX 12 12 SER A 232 GLN A 243 1 12 HELIX 13 13 LEU A 244 GLN A 246 5 3 HELIX 14 14 ARG A 249 GLU A 259 1 11 HELIX 15 15 GLY A 272 LEU A 282 1 11 HELIX 16 16 SER A 292 ASP A 297 5 6 HELIX 17 17 LEU B 17 GLN B 22 1 6 HELIX 18 18 GLY B 25 ASP B 38 1 14 HELIX 19 19 ASP B 40 THR B 46 1 7 HELIX 20 20 SER B 49 THR B 54 1 6 HELIX 21 21 ASP B 55 ARG B 77 1 23 HELIX 22 22 VAL B 92 ALA B 101 1 10 HELIX 23 23 ALA B 105 ALA B 125 1 21 HELIX 24 24 ASP B 138 LEU B 149 1 12 HELIX 25 25 LEU B 168 ASP B 177 1 10 HELIX 26 26 THR B 195 PRO B 200 5 6 HELIX 27 27 ALA B 201 ASN B 211 1 11 HELIX 28 28 SER B 232 GLN B 243 1 12 HELIX 29 29 LEU B 244 GLN B 246 5 3 HELIX 30 30 ARG B 249 HIS B 260 1 12 HELIX 31 31 GLY B 272 LEU B 282 1 11 HELIX 32 32 SER B 292 LEU B 302 5 11 SHEET 1 A 5 THR A 220 LEU A 221 0 SHEET 2 A 5 ASP A 84 GLY A 89 1 N VAL A 87 O THR A 220 SHEET 3 A 5 MET A 1 ALA A 6 1 N LEU A 4 O ILE A 86 SHEET 4 A 5 ALA A 264 GLU A 267 1 O VAL A 266 N LEU A 5 SHEET 5 A 5 ALA A 287 ALA A 289 1 O ARG A 288 N GLU A 267 SHEET 1 B 3 THR A 129 LEU A 135 0 SHEET 2 B 3 GLN A 161 ARG A 167 -1 O ILE A 162 N VAL A 134 SHEET 3 B 3 VAL A 152 ALA A 158 -1 N ASN A 155 O VAL A 163 SHEET 1 C 5 THR B 220 LEU B 222 0 SHEET 2 C 5 ASP B 84 GLY B 89 1 N VAL B 87 O THR B 220 SHEET 3 C 5 MET B 1 ALA B 6 1 N LEU B 4 O ILE B 86 SHEET 4 C 5 ALA B 264 GLU B 267 1 O VAL B 266 N LEU B 5 SHEET 5 C 5 ALA B 287 ALA B 289 1 O ARG B 288 N GLU B 267 SHEET 1 D 4 VAL B 152 ALA B 158 0 SHEET 2 D 4 GLN B 161 ARG B 167 -1 O GLN B 161 N ALA B 158 SHEET 3 D 4 THR B 129 VAL B 134 -1 N VAL B 134 O ILE B 162 SHEET 4 D 4 VAL B 184 LEU B 187 -1 O ARG B 185 N ALA B 133 SSBOND 1 CYS B 78 CYS B 78 1555 8555 2.70 LINK OG SER B -17 NI NI B 801 1555 1555 2.39 LINK NE2 HIS B -15 NI NI B 804 1555 1555 2.13 LINK NE2 HIS B -14 NI NI B 805 1555 1555 2.27 LINK NE2 HIS B -13 NI NI B 804 1555 1555 2.26 LINK NE2 HIS B -12 NI NI B 802 1555 1555 2.32 LINK NE2 HIS B -11 NI NI B 805 1555 1555 2.15 LINK NE2 HIS B -10 NI NI B 802 1555 1555 2.14 LINK NE2 HIS B 0 NI NI B 802 1555 1555 2.03 LINK OD1 ASP B 84 NI NI B 802 1555 1555 2.20 LINK OD2 ASP B 216 NI NI B 803 1555 1555 2.06 LINK NI NI B 801 NE2 HIS A -14 1555 11655 2.25 LINK NI NI B 801 NE2 HIS A -11 1555 11655 2.57 LINK NI NI B 802 OD2 ASP A 216 1555 11655 2.11 LINK NI NI B 803 NE2 HIS A -12 1555 11655 2.54 LINK NI NI B 803 NE2 HIS A 0 1555 11655 2.09 LINK NI NI B 803 OD1 ASP A 84 1555 11655 2.17 LINK NI NI B 804 NE2 HIS A -15 1555 11655 2.45 LINK NI NI B 804 NE2 HIS A -13 1555 11655 2.22 LINK NI NI B 805 OG SER A -17 1555 11655 2.07 CISPEP 1 PRO A 269 PRO A 270 0 -1.21 CISPEP 2 PRO B 269 PRO B 270 0 -6.66 SITE 1 AC1 3 HIS A -14 HIS A -11 SER B -17 SITE 1 AC2 5 ASP A 216 HIS B -10 HIS B -12 HIS B 0 SITE 2 AC2 5 ASP B 84 SITE 1 AC3 5 HIS A -12 HIS A -10 HIS A 0 ASP A 84 SITE 2 AC3 5 ASP B 216 SITE 1 AC4 4 HIS A -15 HIS A -13 HIS B -13 HIS B -15 SITE 1 AC5 3 SER A -17 HIS B -14 HIS B -11 CRYST1 180.240 180.240 95.990 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005548 0.003203 0.000000 0.00000 SCALE2 0.000000 0.006406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010418 0.00000