PDB Short entry for 2QN4 HEADER HYDROLASE INHIBITOR 18-JUL-07 2QN4 TITLE STRUCTURE AND FUNCTION STUDY OF RICE BIFUNCTIONAL ALPHA- TITLE 2 AMYLASE/SUBTILISIN INHIBITOR FROM ORYZA SATIVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMYLASE/SUBTILISIN INHIBITOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RASI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 STRAIN: JAPONICA CULTIVAR-GROUP KEYWDS RASI, AMYLASE INHIBITOR, SUBTILISIN INHIBITOR, ALPHA- KEYWDS 2 AMYLASE INHIBITOR, PROTEASE INHIBITOR, SERINE PROTEASE KEYWDS 3 INHIBITOR, HYDROLASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR W.Y.PENG,Y.H.LIN,Y.C.HUANG,H.H.GUAN,Y.C.HSIEH,C.J.CHEN REVDAT 2 24-FEB-09 2QN4 1 VERSN REVDAT 1 22-JUL-08 2QN4 0 JRNL AUTH W.Y.PENG,Y.H.LIN,Y.C.HUANG,H.H.GUAN,Y.C.HSIEH, JRNL AUTH 2 M.Y.LIU,T.CHANG,C.J.CHEN JRNL TITL STRUCTURE AND FUNCTION STUDY OF RICE BIFUNCTIONAL JRNL TITL 2 ALPHA-AMYLASE/SUBTILISIN INHIBITOR FROM ORYZA JRNL TITL 3 SATIVA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.H.LIN,W.Y.PENG,Y.C.HUANG,H.H.GUAN,Y.C.HSIEH, REMARK 1 AUTH 2 M.Y.LIU,T.CHANG,C.J.CHEN REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY CRYSTALLOGRAPHIC ANALYSIS OF RICE REMARK 1 TITL 3 BIFUNCTIONAL ALPHA-AMYLASE/SUBTILISIN INHIBITOR REMARK 1 TITL 4 FROM ORYZA SATIVA REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 62 743 2006 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 16880545 REMARK 1 DOI 10.1107/S1744309106023335 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 30719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3076 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2201 REMARK 3 BIN FREE R VALUE : 0.2376 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 281 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 198 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 0.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.14700 REMARK 3 B22 (A**2) : -1.10400 REMARK 3 B33 (A**2) : 6.25100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.10 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.57 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.35 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.54 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2QN4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING REMARK 200 PREMIRROR, LN2-COOLED FIXED- REMARK 200 EXIT DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR, TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31823 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.5654 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : 0.36300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1AVA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M POTASSIUM REMARK 280 DIHYDROGEN PHOSPHATE, PH4.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.99400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.47450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.99400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.47450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 VAL A -20 REMARK 465 SER A -19 REMARK 465 LEU A -18 REMARK 465 ARG A -17 REMARK 465 LEU A -16 REMARK 465 PRO A -15 REMARK 465 LEU A -14 REMARK 465 ILE A -13 REMARK 465 LEU A -12 REMARK 465 LEU A -11 REMARK 465 SER A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 ALA A -7 REMARK 465 ILE A -6 REMARK 465 SER A -5 REMARK 465 PHE A -4 REMARK 465 SER A -3 REMARK 465 CYS A -2 REMARK 465 SER A -1 REMARK 465 ALA A 0 REMARK 465 ASP A 100 REMARK 465 GLU A 101 REMARK 465 PRO A 102 REMARK 465 LEU A 103 REMARK 465 THR A 104 REMARK 465 GLY A 105 REMARK 465 ALA A 106 REMARK 465 ILE A 115 REMARK 465 GLY A 116 REMARK 465 PRO A 117 REMARK 465 SER A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 ARG A 173 REMARK 465 PRO A 174 REMARK 465 SER A 175 REMARK 465 PRO A 176 REMARK 465 PRO A 177 REMARK 465 GLU A 178 REMARK 465 MET B -21 REMARK 465 VAL B -20 REMARK 465 SER B -19 REMARK 465 LEU B -18 REMARK 465 ARG B -17 REMARK 465 LEU B -16 REMARK 465 PRO B -15 REMARK 465 LEU B -14 REMARK 465 ILE B -13 REMARK 465 LEU B -12 REMARK 465 LEU B -11 REMARK 465 SER B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 ALA B -7 REMARK 465 ILE B -6 REMARK 465 SER B -5 REMARK 465 PHE B -4 REMARK 465 SER B -3 REMARK 465 CYS B -2 REMARK 465 SER B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 100 REMARK 465 GLU B 101 REMARK 465 PRO B 102 REMARK 465 LEU B 103 REMARK 465 THR B 104 REMARK 465 GLY B 105 REMARK 465 ALA B 106 REMARK 465 ILE B 115 REMARK 465 GLY B 116 REMARK 465 PRO B 117 REMARK 465 SER B 118 REMARK 465 PRO B 119 REMARK 465 SER B 120 REMARK 465 ARG B 173 REMARK 465 PRO B 174 REMARK 465 SER B 175 REMARK 465 PRO B 176 REMARK 465 PRO B 177 REMARK 465 GLU B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 51 O HOH B 265 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 36 C ARG A 37 N 0.241 REMARK 500 PRO B 36 C ARG B 37 N 0.267 REMARK 500 GLY B 121 C ARG B 122 N 0.235 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 38 C - N - CA ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG B 37 CB - CA - C ANGL. DEV. = 34.0 DEGREES REMARK 500 VAL B 38 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 ARG B 37 CA - C - N ANGL. DEV. = 16.6 DEGREES REMARK 500 ARG B 37 O - C - N ANGL. DEV. = -40.2 DEGREES REMARK 500 VAL B 38 CA - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 VAL B 38 O - C - N ANGL. DEV. = 18.5 DEGREES REMARK 500 LEU B 114 N - CA - C ANGL. DEV. = 20.8 DEGREES REMARK 500 GLY B 121 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 69 154.88 -49.13 REMARK 500 THR A 111 -169.98 -108.34 REMARK 500 ARG A 122 15.68 57.90 REMARK 500 ASP A 142 -92.02 -115.82 REMARK 500 PRO B 69 152.88 -46.50 REMARK 500 ARG B 122 17.74 51.70 REMARK 500 ASP B 142 -100.74 -116.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 37 VAL A 38 149.56 REMARK 500 ARG B 37 VAL B 38 -140.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 37 -23.62 REMARK 500 ARG B 37 41.21 REMARK 500 LEU B 39 11.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AVA RELATED DB: PDB REMARK 900 RELATED ID: 2IWT RELATED DB: PDB DBREF 2QN4 A -21 178 UNP P29421 IAAS_ORYSJ 1 200 DBREF 2QN4 B -21 178 UNP P29421 IAAS_ORYSJ 1 200 SEQRES 1 A 200 MET VAL SER LEU ARG LEU PRO LEU ILE LEU LEU SER LEU SEQRES 2 A 200 LEU ALA ILE SER PHE SER CYS SER ALA ALA PRO PRO PRO SEQRES 3 A 200 VAL TYR ASP THR GLU GLY HIS GLU LEU SER ALA ASP GLY SEQRES 4 A 200 SER TYR TYR VAL LEU PRO ALA SER PRO GLY HIS GLY GLY SEQRES 5 A 200 GLY LEU THR MET ALA PRO ARG VAL LEU PRO CYS PRO LEU SEQRES 6 A 200 LEU VAL ALA GLN GLU THR ASP GLU ARG ARG LYS GLY PHE SEQRES 7 A 200 PRO VAL ARG PHE THR PRO TRP GLY GLY ALA ALA ALA PRO SEQRES 8 A 200 GLU ASP ARG THR ILE ARG VAL SER THR ASP VAL ARG ILE SEQRES 9 A 200 ARG PHE ASN ALA ALA THR ILE CYS VAL GLN SER THR GLU SEQRES 10 A 200 TRP HIS VAL GLY ASP GLU PRO LEU THR GLY ALA ARG ARG SEQRES 11 A 200 VAL VAL THR GLY PRO LEU ILE GLY PRO SER PRO SER GLY SEQRES 12 A 200 ARG GLU ASN ALA PHE ARG VAL GLU LYS TYR GLY GLY GLY SEQRES 13 A 200 TYR LYS LEU VAL SER CYS ARG ASP SER CYS GLN ASP LEU SEQRES 14 A 200 GLY VAL SER ARG ASP GLY ALA ARG ALA TRP LEU GLY ALA SEQRES 15 A 200 SER GLN PRO PRO HIS VAL VAL VAL PHE LYS LYS ALA ARG SEQRES 16 A 200 PRO SER PRO PRO GLU SEQRES 1 B 200 MET VAL SER LEU ARG LEU PRO LEU ILE LEU LEU SER LEU SEQRES 2 B 200 LEU ALA ILE SER PHE SER CYS SER ALA ALA PRO PRO PRO SEQRES 3 B 200 VAL TYR ASP THR GLU GLY HIS GLU LEU SER ALA ASP GLY SEQRES 4 B 200 SER TYR TYR VAL LEU PRO ALA SER PRO GLY HIS GLY GLY SEQRES 5 B 200 GLY LEU THR MET ALA PRO ARG VAL LEU PRO CYS PRO LEU SEQRES 6 B 200 LEU VAL ALA GLN GLU THR ASP GLU ARG ARG LYS GLY PHE SEQRES 7 B 200 PRO VAL ARG PHE THR PRO TRP GLY GLY ALA ALA ALA PRO SEQRES 8 B 200 GLU ASP ARG THR ILE ARG VAL SER THR ASP VAL ARG ILE SEQRES 9 B 200 ARG PHE ASN ALA ALA THR ILE CYS VAL GLN SER THR GLU SEQRES 10 B 200 TRP HIS VAL GLY ASP GLU PRO LEU THR GLY ALA ARG ARG SEQRES 11 B 200 VAL VAL THR GLY PRO LEU ILE GLY PRO SER PRO SER GLY SEQRES 12 B 200 ARG GLU ASN ALA PHE ARG VAL GLU LYS TYR GLY GLY GLY SEQRES 13 B 200 TYR LYS LEU VAL SER CYS ARG ASP SER CYS GLN ASP LEU SEQRES 14 B 200 GLY VAL SER ARG ASP GLY ALA ARG ALA TRP LEU GLY ALA SEQRES 15 B 200 SER GLN PRO PRO HIS VAL VAL VAL PHE LYS LYS ALA ARG SEQRES 16 B 200 PRO SER PRO PRO GLU FORMUL 3 HOH *198(H2 O) HELIX 1 1 GLY A 64 ALA A 68 5 5 HELIX 2 2 GLY B 64 ALA B 68 5 5 SHEET 1 A 2 TYR A 19 PRO A 23 0 SHEET 2 A 2 VAL A 167 LYS A 171 -1 O LYS A 170 N TYR A 20 SHEET 1 B 2 LEU A 32 ALA A 35 0 SHEET 2 B 2 LEU A 44 GLN A 47 -1 O ALA A 46 N THR A 33 SHEET 1 C 2 VAL A 58 PRO A 62 0 SHEET 2 C 2 VAL A 80 PHE A 84 -1 O ARG A 81 N THR A 61 SHEET 1 D 2 HIS A 97 VAL A 98 0 SHEET 2 D 2 VAL A 109 VAL A 110 -1 O VAL A 110 N HIS A 97 SHEET 1 E 4 PHE A 126 TYR A 131 0 SHEET 2 E 4 GLY A 134 SER A 139 -1 O LYS A 136 N GLU A 129 SHEET 3 E 4 GLN A 145 ASP A 152 -1 O GLN A 145 N SER A 139 SHEET 4 E 4 ARG A 155 ALA A 160 -1 O ARG A 155 N ASP A 152 SHEET 1 F 2 TYR B 19 PRO B 23 0 SHEET 2 F 2 VAL B 167 LYS B 171 -1 O LYS B 170 N TYR B 20 SHEET 1 G 2 LEU B 32 ALA B 35 0 SHEET 2 G 2 LEU B 44 GLN B 47 -1 O ALA B 46 N THR B 33 SHEET 1 H 2 VAL B 58 PRO B 62 0 SHEET 2 H 2 VAL B 80 PHE B 84 -1 O ARG B 81 N THR B 61 SHEET 1 I 2 HIS B 97 VAL B 98 0 SHEET 2 I 2 VAL B 109 VAL B 110 -1 O VAL B 110 N HIS B 97 SHEET 1 J 4 PHE B 126 TYR B 131 0 SHEET 2 J 4 GLY B 134 SER B 139 -1 O LYS B 136 N GLU B 129 SHEET 3 J 4 GLN B 145 ASP B 152 -1 O GLN B 145 N SER B 139 SHEET 4 J 4 ARG B 155 ALA B 160 -1 O ARG B 155 N ASP B 152 SSBOND 1 CYS A 41 CYS A 90 1555 1555 2.07 SSBOND 2 CYS A 140 CYS A 144 1555 1555 2.19 SSBOND 3 CYS B 41 CYS B 90 1555 1555 2.07 SSBOND 4 CYS B 140 CYS B 144 1555 1555 2.08 CISPEP 1 CYS A 41 PRO A 42 0 -3.64 CISPEP 2 GLN A 162 PRO A 163 0 -1.44 CISPEP 3 CYS B 41 PRO B 42 0 -3.80 CISPEP 4 GLN B 162 PRO B 163 0 -4.75 CRYST1 79.988 62.949 66.696 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014993 0.00000