PDB Short entry for 2QR7 HEADER TRANSFERASE 27-JUL-07 2QR7 TITLE 2.0A X-RAY STRUCTURE OF C-TERMINAL KINASE DOMAIN OF P90 RIBOSOMAL S6 TITLE 2 KINASE 2: SE-MET DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S6K-ALPHA 3, 90 KDA RIBOSOMAL PROTEIN S6 KINASE 3, P90-RSK COMPND 5 3, RIBOSOMAL S6 KINASE 2, RSK-2, PP90RSK2, MAP KINASE-ACTIVATED COMPND 6 PROTEIN KINASE 1B, MAPKAPK1B; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RPS6KA3, RPS6KA-RS1, RSK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODON PLUS (DE3)-RILP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-46 EK/LIC KEYWDS KINASE DOMAIN, RSK2, AUTOINHIBITORY, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 PHOSPHORYLATION, SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MALAKHOVA,V.TERESHKO,Z.DONG REVDAT 5 20-OCT-21 2QR7 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2QR7 1 VERSN REVDAT 3 24-FEB-09 2QR7 1 VERSN REVDAT 2 22-JAN-08 2QR7 1 JRNL REVDAT 1 11-DEC-07 2QR7 0 JRNL AUTH M.MALAKHOVA,V.TERESHKO,S.Y.LEE,K.YAO,Y.-Y.CHO,A.BODE,Z.DONG JRNL TITL STRUCTURAL BASIS FOR ACTIVATION OF THE AUTOINHIBITORY JRNL TITL 2 C-TERMINAL KINASE DOMAIN OF P90 RSK2. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 112 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18084304 JRNL DOI 10.1038/NSMB1347 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23160 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1187 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1549 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2365 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 45.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : -2.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2427 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1638 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3293 ; 1.217 ; 1.887 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3998 ; 0.834 ; 2.162 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 6.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;34.721 ;24.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;15.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.033 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2690 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 488 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 494 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1636 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1199 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1088 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 78 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.071 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.126 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.268 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.101 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 0.899 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 602 ; 0.240 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2401 ; 1.646 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 975 ; 2.775 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 892 ; 3.948 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 495 REMARK 3 RESIDUE RANGE : A 1000 A 1012 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4815 37.2358 132.6625 REMARK 3 T TENSOR REMARK 3 T11: -0.0238 T22: 0.0112 REMARK 3 T33: -0.1485 T12: 0.0942 REMARK 3 T13: -0.0577 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 3.1925 L22: 2.5552 REMARK 3 L33: 2.3414 L12: 1.0550 REMARK 3 L13: -0.1019 L23: 0.1257 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: -0.2398 S13: 0.1878 REMARK 3 S21: 0.1919 S22: -0.1326 S23: -0.1317 REMARK 3 S31: -0.5885 S32: -0.0339 S33: 0.0634 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 496 A 714 REMARK 3 RESIDUE RANGE : A 1013 A 1091 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1857 21.7478 123.7432 REMARK 3 T TENSOR REMARK 3 T11: -0.1421 T22: 0.0433 REMARK 3 T33: -0.0303 T12: 0.0424 REMARK 3 T13: 0.0339 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 1.3162 L22: 1.3800 REMARK 3 L33: 1.4455 L12: -0.3485 REMARK 3 L13: 0.4410 L23: -0.1915 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: -0.2277 S13: -0.0146 REMARK 3 S21: 0.1117 S22: 0.1757 S23: 0.0917 REMARK 3 S31: 0.0021 S32: -0.2029 S33: -0.0618 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000043952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23160 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 23160.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 36.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.5%-10% PEG3350, 50MM AMMONIUM REMARK 280 SULFATE, 0.1M HEPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.99500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.29250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.29250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.49750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.29250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.29250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 220.49250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.29250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.29250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.49750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.29250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.29250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 220.49250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 399 REMARK 465 GLN A 400 REMARK 465 THR A 401 REMARK 465 VAL A 402 REMARK 465 GLY A 403 REMARK 465 VAL A 404 REMARK 465 HIS A 405 REMARK 465 SER A 406 REMARK 465 ILE A 407 REMARK 465 VAL A 408 REMARK 465 GLN A 409 REMARK 465 GLN A 410 REMARK 465 LEU A 411 REMARK 465 HIS A 412 REMARK 465 ARG A 413 REMARK 465 ASN A 414 REMARK 465 SER A 415 REMARK 465 ILE A 416 REMARK 465 SER A 715 REMARK 465 PRO A 716 REMARK 465 VAL A 717 REMARK 465 LEU A 718 REMARK 465 GLU A 719 REMARK 465 PRO A 720 REMARK 465 VAL A 721 REMARK 465 GLY A 722 REMARK 465 ARG A 723 REMARK 465 SER A 724 REMARK 465 THR A 725 REMARK 465 LEU A 726 REMARK 465 ALA A 727 REMARK 465 GLN A 728 REMARK 465 ARG A 729 REMARK 465 ARG A 730 REMARK 465 GLY A 731 REMARK 465 ILE A 732 REMARK 465 LYS A 733 REMARK 465 LYS A 734 REMARK 465 ILE A 735 REMARK 465 THR A 736 REMARK 465 SER A 737 REMARK 465 THR A 738 REMARK 465 ALA A 739 REMARK 465 LEU A 740 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 714 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 481 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 549 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 425 -138.59 -114.85 REMARK 500 ASP A 539 41.33 -147.45 REMARK 500 LEU A 540 46.16 -81.04 REMARK 500 ASP A 561 79.11 52.10 REMARK 500 TYR A 580 88.41 -64.96 REMARK 500 HIS A 681 47.50 -102.47 REMARK 500 ASP A 694 77.86 -112.01 REMARK 500 ALA A 695 58.07 -146.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1000 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 471 O REMARK 620 2 HIS A 473 O 93.8 REMARK 620 3 ILE A 476 O 107.0 90.5 REMARK 620 4 THR A 478 OG1 95.8 164.4 98.5 REMARK 620 5 HOH A1001 O 152.3 95.2 99.1 70.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QR8 RELATED DB: PDB REMARK 900 2.0A X-RAY STRUCTURE OF C-TERMINAL KINASE DOMAIN OF P90 RIBOSOMAL REMARK 900 S6 KINASE RSK2 DBREF 2QR7 A 399 740 UNP P18654 KS6A3_MOUSE 399 740 SEQADV 2QR7 GLU A 591 UNP P18654 LYS 591 ENGINEERED MUTATION SEQRES 1 A 342 MSE GLN THR VAL GLY VAL HIS SER ILE VAL GLN GLN LEU SEQRES 2 A 342 HIS ARG ASN SER ILE GLN PHE THR ASP GLY TYR GLU VAL SEQRES 3 A 342 LYS GLU ASP ILE GLY VAL GLY SER TYR SER VAL CYS LYS SEQRES 4 A 342 ARG CYS ILE HIS LYS ALA THR ASN MSE GLU PHE ALA VAL SEQRES 5 A 342 LYS ILE ILE ASP LYS SER LYS ARG ASP PRO THR GLU GLU SEQRES 6 A 342 ILE GLU ILE LEU LEU ARG TYR GLY GLN HIS PRO ASN ILE SEQRES 7 A 342 ILE THR LEU LYS ASP VAL TYR ASP ASP GLY LYS TYR VAL SEQRES 8 A 342 TYR VAL VAL THR GLU LEU MSE LYS GLY GLY GLU LEU LEU SEQRES 9 A 342 ASP LYS ILE LEU ARG GLN LYS PHE PHE SER GLU ARG GLU SEQRES 10 A 342 ALA SER ALA VAL LEU PHE THR ILE THR LYS THR VAL GLU SEQRES 11 A 342 TYR LEU HIS ALA GLN GLY VAL VAL HIS ARG ASP LEU LYS SEQRES 12 A 342 PRO SER ASN ILE LEU TYR VAL ASP GLU SER GLY ASN PRO SEQRES 13 A 342 GLU SER ILE ARG ILE CYS ASP PHE GLY PHE ALA LYS GLN SEQRES 14 A 342 LEU ARG ALA GLU ASN GLY LEU LEU MSE THR PRO CYS TYR SEQRES 15 A 342 THR ALA ASN PHE VAL ALA PRO GLU VAL LEU GLU ARG GLN SEQRES 16 A 342 GLY TYR ASP ALA ALA CYS ASP ILE TRP SER LEU GLY VAL SEQRES 17 A 342 LEU LEU TYR THR MSE LEU THR GLY TYR THR PRO PHE ALA SEQRES 18 A 342 ASN GLY PRO ASP ASP THR PRO GLU GLU ILE LEU ALA ARG SEQRES 19 A 342 ILE GLY SER GLY LYS PHE SER LEU SER GLY GLY TYR TRP SEQRES 20 A 342 ASN SER VAL SER ASP THR ALA LYS ASP LEU VAL SER LYS SEQRES 21 A 342 MSE LEU HIS VAL ASP PRO HIS GLN ARG LEU THR ALA ALA SEQRES 22 A 342 LEU VAL LEU ARG HIS PRO TRP ILE VAL HIS TRP ASP GLN SEQRES 23 A 342 LEU PRO GLN TYR GLN LEU ASN ARG GLN ASP ALA PRO HIS SEQRES 24 A 342 LEU VAL LYS GLY ALA MSE ALA ALA THR TYR SER ALA LEU SEQRES 25 A 342 ASN ARG ASN GLN SER PRO VAL LEU GLU PRO VAL GLY ARG SEQRES 26 A 342 SER THR LEU ALA GLN ARG ARG GLY ILE LYS LYS ILE THR SEQRES 27 A 342 SER THR ALA LEU MODRES 2QR7 MSE A 446 MET SELENOMETHIONINE MODRES 2QR7 MSE A 496 MET SELENOMETHIONINE MODRES 2QR7 MSE A 576 MET SELENOMETHIONINE MODRES 2QR7 MSE A 611 MET SELENOMETHIONINE MODRES 2QR7 MSE A 659 MET SELENOMETHIONINE MODRES 2QR7 MSE A 703 MET SELENOMETHIONINE HET MSE A 446 8 HET MSE A 496 8 HET MSE A 576 8 HET MSE A 611 8 HET MSE A 659 8 HET MSE A 703 8 HET NA A1000 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *91(H2 O) HELIX 1 1 GLN A 417 GLY A 421 1 5 HELIX 2 2 PRO A 460 GLY A 471 1 12 HELIX 3 3 GLU A 500 ARG A 507 1 8 HELIX 4 4 SER A 512 GLN A 533 1 22 HELIX 5 5 LYS A 541 SER A 543 5 3 HELIX 6 6 ASN A 553 GLU A 555 5 3 HELIX 7 7 ALA A 586 GLY A 614 1 29 HELIX 8 8 THR A 625 GLY A 636 1 12 HELIX 9 9 SER A 649 LEU A 660 1 12 HELIX 10 10 THR A 669 LEU A 674 1 6 HELIX 11 11 HIS A 676 HIS A 681 1 6 HELIX 12 12 TRP A 682 LEU A 685 5 4 HELIX 13 13 ALA A 695 ASN A 711 1 17 SHEET 1 A 5 TYR A 422 VAL A 430 0 SHEET 2 A 5 SER A 434 HIS A 441 -1 O CYS A 436 N ILE A 428 SHEET 3 A 5 GLU A 447 ASP A 454 -1 O ILE A 452 N VAL A 435 SHEET 4 A 5 TYR A 488 THR A 493 -1 O VAL A 489 N ILE A 453 SHEET 5 A 5 LEU A 479 ASP A 484 -1 N LYS A 480 O VAL A 492 SHEET 1 B 2 VAL A 535 VAL A 536 0 SHEET 2 B 2 LYS A 566 GLN A 567 -1 O LYS A 566 N VAL A 536 SHEET 1 C 2 ILE A 545 TYR A 547 0 SHEET 2 C 2 ILE A 557 ILE A 559 -1 O ARG A 558 N LEU A 546 SSBOND 1 CYS A 579 CYS A 579 1555 7556 2.05 LINK C ASN A 445 N MSE A 446 1555 1555 1.33 LINK C MSE A 446 N GLU A 447 1555 1555 1.34 LINK C LEU A 495 N MSE A 496 1555 1555 1.33 LINK C MSE A 496 N LYS A 497 1555 1555 1.31 LINK C LEU A 575 N MSE A 576 1555 1555 1.33 LINK C MSE A 576 N THR A 577 1555 1555 1.33 LINK C THR A 610 N MSE A 611 1555 1555 1.34 LINK C MSE A 611 N LEU A 612 1555 1555 1.33 LINK C LYS A 658 N MSE A 659 1555 1555 1.34 LINK C MSE A 659 N LEU A 660 1555 1555 1.33 LINK C ALA A 702 N MSE A 703 1555 1555 1.32 LINK C MSE A 703 N ALA A 704 1555 1555 1.33 LINK O GLY A 471 NA NA A1000 1555 1555 2.17 LINK O HIS A 473 NA NA A1000 1555 1555 2.35 LINK O ILE A 476 NA NA A1000 1555 1555 2.31 LINK OG1 THR A 478 NA NA A1000 1555 1555 2.37 LINK NA NA A1000 O HOH A1001 1555 1555 2.35 SITE 1 AC1 6 GLY A 471 HIS A 473 ILE A 476 THR A 478 SITE 2 AC1 6 HOH A1001 HOH A1002 CRYST1 46.585 46.585 293.990 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003401 0.00000