PDB Short entry for 2QTP HEADER UNKNOWN FUNCTION 02-AUG-07 2QTP TITLE CRYSTAL STRUCTURE OF A DUF1185 FAMILY PROTEIN (SPO0826) FROM TITLE 2 SILICIBACTER POMEROYI DSS-3 AT 2.10 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI DSS-3; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3, DSM 15171; SOURCE 5 ATCC: 700808; SOURCE 6 GENE: YP_166079.1, SPO0826; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 2QTP 1 SEQADV REVDAT 7 24-JUL-19 2QTP 1 REMARK LINK REVDAT 6 25-OCT-17 2QTP 1 REMARK REVDAT 5 24-OCT-12 2QTP 1 JRNL REVDAT 4 13-JUL-11 2QTP 1 VERSN REVDAT 3 23-MAR-11 2QTP 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QTP 1 VERSN REVDAT 1 21-AUG-07 2QTP 0 JRNL AUTH C.BAKOLITSA,A.KUMAR,K.K.JIN,D.MCMULLAN,S.S.KRISHNA, JRNL AUTH 2 M.D.MILLER,P.ABDUBEK,C.ACOSTA,T.ASTAKHOVA,H.L.AXELROD, JRNL AUTH 3 P.BURRA,D.CARLTON,C.CHEN,H.J.CHIU,T.CLAYTON,D.DAS, JRNL AUTH 4 M.C.DELLER,L.DUAN,Y.ELIAS,K.ELLROTT,D.ERNST,C.L.FARR, JRNL AUTH 5 J.FEUERHELM,J.C.GRANT,A.GRZECHNIK,S.K.GRZECHNIK,G.W.HAN, JRNL AUTH 6 L.JAROSZEWSKI,H.A.JOHNSON,H.E.KLOCK,M.W.KNUTH,P.KOZBIAL, JRNL AUTH 7 D.MARCIANO,A.T.MORSE,K.D.MURPHY,E.NIGOGHOSSIAN,A.NOPAKUN, JRNL AUTH 8 L.OKACH,J.PAULSEN,C.PUCKETT,R.REYES,C.L.RIFE,N.SEFCOVIC, JRNL AUTH 9 H.J.TIEN,C.B.TRAME,C.V.TROUT,H.VAN DEN BEDEM,D.WEEKES, JRNL AUTH10 A.WHITE,Q.XU,K.O.HODGSON,J.WOOLEY,M.A.ELSLIGER,A.M.DEACON, JRNL AUTH11 A.GODZIK,S.A.LESLEY,I.A.WILSON JRNL TITL STRUCTURES OF THE FIRST REPRESENTATIVES OF PFAM FAMILY JRNL TITL 2 PF06684 (DUF1185) REVEAL A NOVEL VARIANT OF THE BACILLUS JRNL TITL 3 CHORISMATE MUTASE FOLD AND SUGGEST A ROLE IN AMINO-ACID JRNL TITL 4 METABOLISM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 1182 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20944209 JRNL DOI 10.1107/S1744309109050647 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 882 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 42 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 51.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1120 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 755 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1519 ; 1.682 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1856 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 150 ; 4.527 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;31.126 ;24.419 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;13.745 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.623 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 178 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1262 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 202 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 179 ; 0.208 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 724 ; 0.201 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 525 ; 0.168 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 603 ; 0.094 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.142 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.179 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 29 ; 0.359 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.295 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 769 ; 2.166 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 303 ; 0.489 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1195 ; 3.499 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 388 ; 6.290 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 324 ; 8.888 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 54.5340 23.3460 10.2780 REMARK 3 T TENSOR REMARK 3 T11: -0.3326 T22: -0.2806 REMARK 3 T33: -0.1998 T12: -0.0415 REMARK 3 T13: -0.0417 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 3.3190 L22: 4.8026 REMARK 3 L33: 2.3208 L12: 2.6145 REMARK 3 L13: -1.1479 L23: -1.9240 REMARK 3 S TENSOR REMARK 3 S11: -0.1504 S12: 0.3481 S13: 0.3173 REMARK 3 S21: -0.2503 S22: 0.1718 S23: 0.2502 REMARK 3 S31: -0.1380 S32: 0.0642 S33: -0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. REMARK 3 4. RESIDUES 0 TO 2, 103 TO 115, 137 TO 145, 171 TO 193 ARE REMARK 3 DISORDERED AND NOT MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 2QTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162, 0.97922, 0.97905 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13007 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 27.308 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.1M SODIUM DIHYDROGEN REMARK 280 PHOSPHATE, 0.1M POTASSIUM DIHYDROGEN PHOSPHATE, 2.0M SODIUM REMARK 280 CHLORIDE, 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.57500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 47.36500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 47.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.36250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 47.36500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 47.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 11.78750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 47.36500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.36250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 47.36500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 11.78750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 23.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 94.73000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 94.73000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 23.57500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY A 103 REMARK 465 ALA A 104 REMARK 465 PRO A 105 REMARK 465 LEU A 106 REMARK 465 ARG A 107 REMARK 465 LYS A 108 REMARK 465 ALA A 109 REMARK 465 VAL A 110 REMARK 465 GLU A 111 REMARK 465 LYS A 112 REMARK 465 GLY A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 465 LYS A 137 REMARK 465 ASP A 138 REMARK 465 ALA A 139 REMARK 465 ALA A 140 REMARK 465 TYR A 141 REMARK 465 VAL A 142 REMARK 465 ARG A 143 REMARK 465 SER A 144 REMARK 465 HIS A 145 REMARK 465 GLY A 172 REMARK 465 ARG A 173 REMARK 465 PRO A 174 REMARK 465 LEU A 175 REMARK 465 PRO A 176 REMARK 465 ARG A 177 REMARK 465 VAL A 178 REMARK 465 GLY A 179 REMARK 465 GLY A 180 REMARK 465 LEU A 181 REMARK 465 THR A 182 REMARK 465 HIS A 183 REMARK 465 ASP A 184 REMARK 465 ALA A 185 REMARK 465 ALA A 186 REMARK 465 GLU A 187 REMARK 465 GLY A 188 REMARK 465 LYS A 189 REMARK 465 ASP A 190 REMARK 465 GLY A 191 REMARK 465 LEU A 192 REMARK 465 ARG A 193 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ALA A 18 CB REMARK 470 ARG A 20 NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 74 CD OE1 OE2 REMARK 470 GLU A 77 CD OE1 OE2 REMARK 470 GLU A 87 OE1 OE2 REMARK 470 LYS A 101 NZ REMARK 470 LEU A 116 CG CD1 CD2 REMARK 470 LYS A 122 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 150 NH2 ARG A 152 8665 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 152 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 374584 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QTP A 1 193 UNP Q5LV76 Q5LV76_SILPO 1 193 SEQADV 2QTP GLY A 0 UNP Q5LV76 EXPRESSION TAG SEQRES 1 A 194 GLY MSE THR LYS ILE ARG LYS ILE ALA VAL PHE ILE GLU SEQRES 2 A 194 GLU THR ARG ILE GLU ALA GLY ARG GLU ILE SER PRO PRO SEQRES 3 A 194 THR ARG LYS ALA VAL ALA VAL ALA VAL ILE GLU ASN PRO SEQRES 4 A 194 PHE ALA GLY ARG TYR VAL GLU ASP LEU THR GLU LEU MSE SEQRES 5 A 194 ASP THR GLY ALA GLU LEU GLY ALA LEU LEU GLY GLU ARG SEQRES 6 A 194 CYS VAL GLN ALA LEU GLY ILE ARG PRO GLU GLN ALA GLU SEQRES 7 A 194 SER TYR GLY LYS SER ALA MSE VAL GLY GLU ASN GLY GLU SEQRES 8 A 194 LEU GLU HIS ALA ALA ALA ILE LEU HIS PRO LYS LEU GLY SEQRES 9 A 194 ALA PRO LEU ARG LYS ALA VAL GLU LYS GLY ALA ALA LEU SEQRES 10 A 194 VAL PRO SER SER LYS LYS MSE GLY SER PRO GLY GLN VAL SEQRES 11 A 194 LEU ASP VAL PRO LEU GLY HIS LYS ASP ALA ALA TYR VAL SEQRES 12 A 194 ARG SER HIS PHE ASP GLY ILE GLU VAL ARG LEU ASN ASP SEQRES 13 A 194 ALA PRO ARG ALA ASN GLU ILE MSE VAL ALA VAL ALA VAL SEQRES 14 A 194 THR ASP SER GLY ARG PRO LEU PRO ARG VAL GLY GLY LEU SEQRES 15 A 194 THR HIS ASP ALA ALA GLU GLY LYS ASP GLY LEU ARG MODRES 2QTP MSE A 51 MET SELENOMETHIONINE MODRES 2QTP MSE A 84 MET SELENOMETHIONINE MODRES 2QTP MSE A 123 MET SELENOMETHIONINE MODRES 2QTP MSE A 163 MET SELENOMETHIONINE HET MSE A 51 8 HET MSE A 84 8 HET MSE A 123 8 HET MSE A 163 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *42(H2 O) HELIX 1 1 LEU A 47 GLY A 70 1 24 HELIX 2 2 ARG A 72 ALA A 76 5 5 HELIX 3 3 GLU A 90 LEU A 98 1 9 SHEET 1 A 5 ILE A 4 GLU A 17 0 SHEET 2 A 5 ARG A 20 GLU A 36 -1 O VAL A 32 N ALA A 8 SHEET 3 A 5 GLU A 161 ASP A 170 -1 O ASP A 170 N ARG A 27 SHEET 4 A 5 SER A 78 VAL A 85 -1 N SER A 82 O ALA A 165 SHEET 5 A 5 SER A 119 MSE A 123 1 O LYS A 122 N VAL A 85 SHEET 1 B 2 LEU A 130 LEU A 134 0 SHEET 2 B 2 ASP A 147 VAL A 151 -1 O ILE A 149 N VAL A 132 LINK C LEU A 50 N MSE A 51 1555 1555 1.35 LINK C MSE A 51 N ASP A 52 1555 1555 1.33 LINK C ALA A 83 N MSE A 84 1555 1555 1.32 LINK C MSE A 84 N AVAL A 85 1555 1555 1.33 LINK C MSE A 84 N BVAL A 85 1555 1555 1.33 LINK C LYS A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N GLY A 124 1555 1555 1.32 LINK C ILE A 162 N MSE A 163 1555 1555 1.35 LINK C MSE A 163 N VAL A 164 1555 1555 1.32 CISPEP 1 SER A 23 PRO A 24 0 1.47 CISPEP 2 ALA A 156 PRO A 157 0 -6.05 CRYST1 94.730 94.730 47.150 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010556 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021209 0.00000