PDB Short entry for 2R32 HEADER IMMUNE SYSTEM 28-AUG-07 2R32 TITLE CRYSTAL STRUCTURE OF HUMAN GITRL VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN4-PII/TUMOR NECROSIS FACTOR LIGAND SUPERFAMILY MEMBER 18 COMPND 3 FUSION PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: TNF HOMOLOGY DOMAIN; COMPND 6 SYNONYM: GLUCOCORTICOID-INDUCED TNF-RELATED LIGAND, HGITRL, COMPND 7 ACTIVATION-INDUCIBLE TNF-RELATED LIGAND, AITRL; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST, HUMAN; SOURCE 4 ORGANISM_TAXID: 4932,9606; SOURCE 5 STRAIN: ,; SOURCE 6 GENE: TNFSF18, AITRL, GITRL, TL6; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-14B KEYWDS GITRL, GLUCOCORTICOID-INDUCED TNF RECEPTOR LIGAND, CYTOKINE, KEYWDS 2 GLYCOPROTEIN, MEMBRANE, SIGNAL-ANCHOR, TRANSMEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.CHATTOPADHYAY,U.A.RAMAGOPAL,S.G.NATHENSON,S.C.ALMO REVDAT 4 30-AUG-23 2R32 1 REMARK REVDAT 3 25-OCT-17 2R32 1 REMARK REVDAT 2 30-DEC-08 2R32 1 JRNL VERSN REVDAT 1 20-NOV-07 2R32 0 JRNL AUTH K.CHATTOPADHYAY,U.A.RAMAGOPAL,A.MUKHOPADHAYA, JRNL AUTH 2 V.N.MALASHKEVICH,T.P.DILORENZO,M.BRENOWITZ,S.G.NATHENSON, JRNL AUTH 3 S.C.ALMO JRNL TITL ASSEMBLY AND STRUCTURAL PROPERTIES OF GLUCOCORTICOID-INDUCED JRNL TITL 2 TNF RECEPTOR LIGAND: IMPLICATIONS FOR FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 19452 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 18040044 JRNL DOI 10.1073/PNAS.0709264104 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 554 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1125 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : -0.60000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.169 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1153 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1558 ; 1.534 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 136 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;33.435 ;25.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 211 ;18.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;22.244 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 831 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 454 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 779 ; 0.326 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.139 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.203 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.225 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 722 ; 4.537 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1130 ; 5.946 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 499 ; 4.736 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 428 ; 6.254 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q1M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.60950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.67240 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.98267 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 30.60950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 17.67240 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.98267 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 30.60950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 17.67240 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.98267 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.34481 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 75.96533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.34481 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 75.96533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.34481 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 75.96533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -30.60950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -53.01721 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 30.60950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -53.01721 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 ILE A 48 REMARK 465 GLY A 49 REMARK 465 GLU A 50 REMARK 465 ARG A 51 REMARK 465 GLU A 52 REMARK 465 THR A 53 REMARK 465 ALA A 54 REMARK 465 LYS A 55 REMARK 465 GLU A 56 REMARK 465 SER A 73 REMARK 465 SER A 74 REMARK 465 GLU A 75 REMARK 465 ALA A 105 REMARK 465 ASN A 106 REMARK 465 TYR A 107 REMARK 465 ASN A 108 REMARK 465 ASP A 109 REMARK 465 VAL A 110 REMARK 465 SER A 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 28 OE1 OE2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 LYS A 130 CD CE NZ REMARK 470 LYS A 132 CD CE NZ REMARK 470 LYS A 160 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 68 -122.75 -110.05 REMARK 500 TRP A 85 -0.39 83.27 REMARK 500 ASN A 120 -122.91 50.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q1M RELATED DB: PDB REMARK 900 RELATED ID: 2R30 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE RMKQIEDKIEEILSKIYHIENEIARIKKLIGER REMARK 999 CORRESPONDS TO THE COILED-COIL PROTEIN STRUCTURAL MOTIF REMARK 999 OF GCN4-PII, AND IS FUSED AT THE N-TERMINUS OF TNF18_HUMAN. DBREF 2R32 A 52 177 UNP Q9UNG2 TNF18_HUMAN 52 177 SEQRES 1 A 166 GLY SER HIS MET GLY GLY SER ARG MET LYS GLN ILE GLU SEQRES 2 A 166 ASP LYS ILE GLU GLU ILE LEU SER LYS ILE TYR HIS ILE SEQRES 3 A 166 GLU ASN GLU ILE ALA ARG ILE LYS LYS LEU ILE GLY GLU SEQRES 4 A 166 ARG GLU THR ALA LYS GLU PRO CYS MET ALA LYS PHE GLY SEQRES 5 A 166 PRO LEU PRO SER LYS TRP GLN MET ALA SER SER GLU PRO SEQRES 6 A 166 PRO CYS VAL ASN LYS VAL SER ASP TRP LYS LEU GLU ILE SEQRES 7 A 166 LEU GLN ASN GLY LEU TYR LEU ILE TYR GLY GLN VAL ALA SEQRES 8 A 166 PRO ASN ALA ASN TYR ASN ASP VAL ALA PRO PHE GLU VAL SEQRES 9 A 166 ARG LEU TYR LYS ASN LYS ASP MET ILE GLN THR LEU THR SEQRES 10 A 166 ASN LYS SER LYS ILE GLN ASN VAL GLY GLY THR TYR GLU SEQRES 11 A 166 LEU HIS VAL GLY ASP THR ILE ASP LEU ILE PHE ASN SER SEQRES 12 A 166 GLU HIS GLN VAL LEU LYS ASN ASN THR TYR TRP GLY ILE SEQRES 13 A 166 ILE LEU LEU ALA ASN PRO GLN PHE ILE SER HET SO4 A 1 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *48(H2 O) HELIX 1 1 ARG A 19 LEU A 47 1 29 HELIX 2 2 SER A 154 VAL A 158 5 5 SHEET 1 A 5 TRP A 69 ALA A 72 0 SHEET 2 A 5 MET A 59 PHE A 62 -1 N LYS A 61 O GLN A 70 SHEET 3 A 5 TYR A 164 ALA A 171 -1 O TRP A 165 N PHE A 62 SHEET 4 A 5 GLY A 93 VAL A 101 -1 N LEU A 94 O ALA A 171 SHEET 5 A 5 GLN A 134 ASN A 135 -1 O GLN A 134 N VAL A 101 SHEET 1 B 5 TRP A 69 ALA A 72 0 SHEET 2 B 5 MET A 59 PHE A 62 -1 N LYS A 61 O GLN A 70 SHEET 3 B 5 TYR A 164 ALA A 171 -1 O TRP A 165 N PHE A 62 SHEET 4 B 5 GLY A 93 VAL A 101 -1 N LEU A 94 O ALA A 171 SHEET 5 B 5 GLY A 138 LEU A 142 -1 O TYR A 140 N TYR A 95 SHEET 1 C 5 VAL A 79 SER A 83 0 SHEET 2 C 5 LYS A 86 ILE A 89 -1 O GLU A 88 N ASN A 80 SHEET 3 C 5 THR A 147 PHE A 152 -1 O ILE A 148 N LEU A 87 SHEET 4 C 5 VAL A 115 LYS A 119 -1 N TYR A 118 O ASP A 149 SHEET 5 C 5 ASP A 122 LEU A 127 -1 O ILE A 124 N LEU A 117 SSBOND 1 CYS A 58 CYS A 78 1555 1555 2.02 CISPEP 1 GLY A 63 PRO A 64 0 -0.93 CISPEP 2 LEU A 65 PRO A 66 0 15.27 SITE 1 AC1 4 HIS A 36 ASN A 39 ARG A 43 HOH A 183 CRYST1 61.219 61.219 113.948 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016335 0.009431 0.000000 0.00000 SCALE2 0.000000 0.018862 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008776 0.00000