PDB Short entry for 2R52 HEADER CYTOKINE 03-SEP-07 2R52 TITLE CRYSTAL STRUCTURE ANALYSIS OF BONE MORPHOGENETIC PROTEIN-6 (BMP-6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BONE MORPHOGENETIC PROTEIN 6; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MATURE PART (RESIDUES 375-513); COMPND 5 SYNONYM: BMP-6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BMP6, VGR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PN25 KEYWDS BMP-6, TGF-BETA LIGAND, CHONDROGENESIS, CLEAVAGE ON PAIR OF BASIC KEYWDS 2 RESIDUES, CYTOKINE, DEVELOPMENTAL PROTEIN, DIFFERENTIATION, KEYWDS 3 GLYCOPROTEIN, GROWTH FACTOR, OSTEOGENESIS, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR T.D.MUELLER,W.SEBALD,S.SAREMBA REVDAT 3 30-AUG-23 2R52 1 REMARK SEQADV REVDAT 2 24-FEB-09 2R52 1 VERSN REVDAT 1 15-JAN-08 2R52 0 JRNL AUTH S.SAREMBA,J.NICKEL,A.SEHER,A.KOTZSCH,W.SEBALD,T.D.MUELLER JRNL TITL TYPE I RECEPTOR BINDING OF BONE MORPHOGENETIC PROTEIN 6 IS JRNL TITL 2 DEPENDENT ON N-GLYCOSYLATION OF THE LIGAND. JRNL REF FEBS J. V. 275 172 2007 JRNL REFN ISSN 1742-464X JRNL PMID 18070108 JRNL DOI 10.1111/J.1742-4658.2007.06187.X REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 16706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1652 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 324 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1625 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.37 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.152 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.74 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.844 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2R52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MULTI-LAYER REMARK 200 OPTICS : OSMIC BLUE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 59.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1BMP BMP-7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% 2-PROPANOL, 0.1M SODIUM CITRATE PH REMARK 280 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.34933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.69867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.69867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.34933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL HOMODIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ALA A -9 REMARK 465 PRO A -8 REMARK 465 THR A -7 REMARK 465 SER A -6 REMARK 465 ALA A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 ARG A -2 REMARK 465 ARG A -1 REMARK 465 ARG A 0 REMARK 465 GLN A 1 REMARK 465 GLN A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 ASN A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 SER A 10 REMARK 465 GLN A 11 REMARK 465 ASP A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 ARG A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 ASP A 21 REMARK 465 TYR A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 GLU A 26 REMARK 465 LEU A 27 REMARK 465 MET B -10 REMARK 465 ALA B -9 REMARK 465 PRO B -8 REMARK 465 THR B -7 REMARK 465 SER B -6 REMARK 465 ALA B -5 REMARK 465 SER B -4 REMARK 465 SER B -3 REMARK 465 ARG B -2 REMARK 465 ARG B -1 REMARK 465 ARG B 0 REMARK 465 GLN B 1 REMARK 465 GLN B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 ASN B 5 REMARK 465 ARG B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLN B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 ASP B 12 REMARK 465 VAL B 13 REMARK 465 ALA B 14 REMARK 465 ARG B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 ALA B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 TYR B 22 REMARK 465 ASN B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 GLU B 26 REMARK 465 LEU B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 TYR A 91 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 101 CG CD CE NZ REMARK 470 ASN B 88 CG OD1 ND2 REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 470 TYR B 91 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 ASP B 112 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 40 0.67 -66.87 REMARK 500 GLN A 46 -55.99 -29.04 REMARK 500 ASP A 47 -5.49 -59.09 REMARK 500 ASN A 58 177.64 58.65 REMARK 500 MET A 72 -91.19 -126.04 REMARK 500 ASN A 88 58.94 -179.86 REMARK 500 ASP A 111 -155.76 -101.38 REMARK 500 GLN B 46 5.87 -63.67 REMARK 500 ASN B 58 173.47 65.79 REMARK 500 ASN B 73 44.15 28.40 REMARK 500 TYR B 91 -68.03 -90.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA B 137 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 136 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 137 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BMP RELATED DB: PDB REMARK 900 BMP-2 LIGAND STRUCTURE REMARK 900 RELATED ID: 1REW RELATED DB: PDB REMARK 900 BINARY COMPLEX OF BMP-2 BOUND TO ITS TYPE I RECEPTOR BMPR-IA REMARK 900 RELATED ID: 2H62 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF BMP-2 BOUND TO ITS TYPE I RECEPTOR BMPR-IA AND REMARK 900 ITS TYPE II RECEPTOR ACTR-IIB REMARK 900 RELATED ID: 2H64 RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF A BMP-2 VARIANT BOUND TO ITS TYPE I RECEPTOR REMARK 900 BMPR-IA AND ITS TYPE II RECEPTOR ACTR-IIB REMARK 900 RELATED ID: 2R53 RELATED DB: PDB DBREF 2R52 A -6 132 UNP P22004 BMP6_HUMAN 375 513 DBREF 2R52 B -6 132 UNP P22004 BMP6_HUMAN 375 513 SEQADV 2R52 MET A -10 UNP P22004 EXPRESSION TAG SEQADV 2R52 ALA A -9 UNP P22004 EXPRESSION TAG SEQADV 2R52 PRO A -8 UNP P22004 EXPRESSION TAG SEQADV 2R52 THR A -7 UNP P22004 EXPRESSION TAG SEQADV 2R52 MET B -10 UNP P22004 EXPRESSION TAG SEQADV 2R52 ALA B -9 UNP P22004 EXPRESSION TAG SEQADV 2R52 PRO B -8 UNP P22004 EXPRESSION TAG SEQADV 2R52 THR B -7 UNP P22004 EXPRESSION TAG SEQRES 1 A 143 MET ALA PRO THR SER ALA SER SER ARG ARG ARG GLN GLN SEQRES 2 A 143 SER ARG ASN ARG SER THR GLN SER GLN ASP VAL ALA ARG SEQRES 3 A 143 VAL SER SER ALA SER ASP TYR ASN SER SER GLU LEU LYS SEQRES 4 A 143 THR ALA CYS ARG LYS HIS GLU LEU TYR VAL SER PHE GLN SEQRES 5 A 143 ASP LEU GLY TRP GLN ASP TRP ILE ILE ALA PRO LYS GLY SEQRES 6 A 143 TYR ALA ALA ASN TYR CYS ASP GLY GLU CYS SER PHE PRO SEQRES 7 A 143 LEU ASN ALA HIS MET ASN ALA THR ASN HIS ALA ILE VAL SEQRES 8 A 143 GLN THR LEU VAL HIS LEU MET ASN PRO GLU TYR VAL PRO SEQRES 9 A 143 LYS PRO CYS CYS ALA PRO THR LYS LEU ASN ALA ILE SER SEQRES 10 A 143 VAL LEU TYR PHE ASP ASP ASN SER ASN VAL ILE LEU LYS SEQRES 11 A 143 LYS TYR ARG ASN MET VAL VAL ARG ALA CYS GLY CYS HIS SEQRES 1 B 143 MET ALA PRO THR SER ALA SER SER ARG ARG ARG GLN GLN SEQRES 2 B 143 SER ARG ASN ARG SER THR GLN SER GLN ASP VAL ALA ARG SEQRES 3 B 143 VAL SER SER ALA SER ASP TYR ASN SER SER GLU LEU LYS SEQRES 4 B 143 THR ALA CYS ARG LYS HIS GLU LEU TYR VAL SER PHE GLN SEQRES 5 B 143 ASP LEU GLY TRP GLN ASP TRP ILE ILE ALA PRO LYS GLY SEQRES 6 B 143 TYR ALA ALA ASN TYR CYS ASP GLY GLU CYS SER PHE PRO SEQRES 7 B 143 LEU ASN ALA HIS MET ASN ALA THR ASN HIS ALA ILE VAL SEQRES 8 B 143 GLN THR LEU VAL HIS LEU MET ASN PRO GLU TYR VAL PRO SEQRES 9 B 143 LYS PRO CYS CYS ALA PRO THR LYS LEU ASN ALA ILE SER SEQRES 10 B 143 VAL LEU TYR PHE ASP ASP ASN SER ASN VAL ILE LEU LYS SEQRES 11 B 143 LYS TYR ARG ASN MET VAL VAL ARG ALA CYS GLY CYS HIS HET IPA A 133 4 HET IPA A 134 4 HET IPA A 135 4 HET IPA A 136 4 HET IPA A 137 4 HET IPA B 133 4 HET IPA B 134 4 HET IPA B 135 4 HET IPA B 136 4 HET IPA B 137 4 HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 3 IPA 10(C3 H8 O) FORMUL 13 HOH *53(H2 O) HELIX 1 1 TRP A 45 ASP A 47 5 3 HELIX 2 2 THR A 75 MET A 87 1 13 HELIX 3 3 ASN B 69 ASN B 73 5 5 HELIX 4 4 THR B 75 ASN B 88 1 14 SHEET 1 A 2 ARG A 32 HIS A 34 0 SHEET 2 A 2 TYR A 59 ASP A 61 -1 O ASP A 61 N ARG A 32 SHEET 1 B 2 TYR A 37 SER A 39 0 SHEET 2 B 2 GLY A 54 ALA A 56 -1 O TYR A 55 N VAL A 38 SHEET 1 C 3 ILE A 49 ALA A 51 0 SHEET 2 C 3 CYS A 96 PHE A 110 -1 O LEU A 108 N ILE A 50 SHEET 3 C 3 VAL A 116 HIS A 132 -1 O ILE A 117 N TYR A 109 SHEET 1 D 2 ARG B 32 HIS B 34 0 SHEET 2 D 2 TYR B 59 ASP B 61 -1 O TYR B 59 N HIS B 34 SHEET 1 E 2 TYR B 37 SER B 39 0 SHEET 2 E 2 GLY B 54 ALA B 56 -1 O TYR B 55 N VAL B 38 SHEET 1 F 3 ILE B 49 ALA B 51 0 SHEET 2 F 3 CYS B 96 PHE B 110 -1 O LEU B 108 N ILE B 50 SHEET 3 F 3 VAL B 116 HIS B 132 -1 O TYR B 121 N ILE B 105 SSBOND 1 CYS A 31 CYS A 97 1555 1555 2.03 SSBOND 2 CYS A 60 CYS A 129 1555 1555 2.03 SSBOND 3 CYS A 64 CYS A 131 1555 1555 2.03 SSBOND 4 CYS A 96 CYS B 96 1555 1555 2.02 SSBOND 5 CYS B 31 CYS B 97 1555 1555 2.05 SSBOND 6 CYS B 60 CYS B 129 1555 1555 2.03 SSBOND 7 CYS B 64 CYS B 131 1555 1555 2.03 CISPEP 1 ALA A 51 PRO A 52 0 -1.10 CISPEP 2 PHE A 66 PRO A 67 0 0.37 CISPEP 3 ALA B 51 PRO B 52 0 -0.53 CISPEP 4 PHE B 66 PRO B 67 0 0.13 SITE 1 AC1 1 ASN B 76 SITE 1 AC2 5 LYS A 119 LYS A 120 TYR A 121 ARG A 122 SITE 2 AC2 5 ASN B 76 SITE 1 AC3 3 ASN B 69 ASN B 113 ASN B 115 SITE 1 AC4 4 TRP A 45 TYR A 109 TYR A 121 LYS B 53 SITE 1 AC5 3 ASP A 42 LEU A 43 SER B 106 SITE 1 AC6 2 ASN B 103 ALA B 104 SITE 1 AC7 3 ASN A 103 ALA A 104 LYS A 120 SITE 1 AC8 3 ARG A 32 HIS A 34 GLU A 35 SITE 1 AC9 2 ALA A 51 PRO A 52 SITE 1 BC1 2 ASN A 76 ILE A 79 CRYST1 97.655 97.655 85.048 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010240 0.005912 0.000000 0.00000 SCALE2 0.000000 0.011824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011758 0.00000