PDB Short entry for 2R86 HEADER UNKNOWN FUNCTION 10-SEP-07 2R86 TITLE CRYSTAL STRUCTURE OF PURP FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURP PROTEIN PF1517; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: T7-7 KEYWDS ATP-GRASP SUPERFAMILY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,R.H.WHITE,S.E.EALICK REVDAT 5 30-AUG-23 2R86 1 REMARK LINK REVDAT 4 25-OCT-17 2R86 1 REMARK REVDAT 3 24-FEB-09 2R86 1 VERSN REVDAT 2 22-JUL-08 2R86 1 JRNL REVDAT 1 04-DEC-07 2R86 0 JRNL AUTH Y.ZHANG,R.H.WHITE,S.E.EALICK JRNL TITL CRYSTAL STRUCTURE AND FUNCTION OF JRNL TITL 2 5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE RIBONUCLEOTIDE SYNTHETASE JRNL TITL 3 FROM METHANOCALDOCOCCUS JANNASCHII. JRNL REF BIOCHEMISTRY V. 47 205 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18069798 JRNL DOI 10.1021/BI701406G REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 55970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -2.80000 REMARK 3 B12 (A**2) : 0.93000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5522 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7491 ; 1.024 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;35.099 ;23.661 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 971 ;14.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;11.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4128 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2224 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3764 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 150 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3258 ; 0.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5293 ; 0.870 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 0.940 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2198 ; 1.676 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 334 5 REMARK 3 1 B 1 B 334 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1268 ; 0.150 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 B (A): 1307 ; 0.370 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1268 ; 7.810 ; 2.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1307 ; 7.870 ;20.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2R7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 100 MM NA/K PHOSPHATE, PH REMARK 280 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.23850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.35606 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.23850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.35606 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.23850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.35606 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.23850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.35606 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.23850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.35606 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.23850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.35606 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.71213 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.71213 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.71213 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.71213 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 373.95000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.71213 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 373.95000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.71213 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 373.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A HEXAMER OR A TRIMER FROM THE REMARK 300 ASYMMETRIC UNIT BY THE OPERATIONS: (X,Y,Z), (-Y,X-Y,Z +(1 1 0)), (- REMARK 300 X+Y,-X,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19440 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.47700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.23850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 106.06819 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16210 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.47700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.23850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 106.06819 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 LYS B 137 REMARK 465 GLY B 138 REMARK 465 GLY B 139 REMARK 465 GLY B 160 REMARK 465 ILE B 161 REMARK 465 LYS B 162 REMARK 465 ARG B 163 REMARK 465 LYS B 164 REMARK 465 GLU B 165 REMARK 465 ASP B 166 REMARK 465 LEU B 167 REMARK 465 LYS B 168 REMARK 465 ASN B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 -62.28 77.16 REMARK 500 SER A 12 25.54 -157.41 REMARK 500 LYS A 41 -61.27 -120.36 REMARK 500 LYS A 137 74.69 -118.80 REMARK 500 ASN A 169 90.15 31.98 REMARK 500 SER A 198 167.16 177.54 REMARK 500 MET A 260 13.48 -145.71 REMARK 500 ASN A 297 33.47 -97.95 REMARK 500 MET A 328 31.92 -140.02 REMARK 500 HIS B 11 -63.50 72.93 REMARK 500 SER B 12 22.95 -154.08 REMARK 500 LYS B 41 -55.62 -129.50 REMARK 500 GLU B 51 43.92 -79.67 REMARK 500 SER B 198 172.84 179.52 REMARK 500 PHE B 295 44.64 -107.17 REMARK 500 ASN B 297 36.07 -94.28 REMARK 500 MET B 328 34.67 -147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 600 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 O REMARK 620 2 ILE A 284 O 102.3 REMARK 620 3 HOH A 601 O 149.7 82.1 REMARK 620 4 HOH A 673 O 89.6 145.3 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 600 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 98 O REMARK 620 2 ILE B 284 O 112.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R84 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH AMP AND AICAR REMARK 900 RELATED ID: 2R85 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH AMP REMARK 900 RELATED ID: 2R87 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH ADP DBREF 2R86 A 1 334 UNP Q8U0R7 Q8U0R7_PYRFU 1 334 DBREF 2R86 B 1 334 UNP Q8U0R7 Q8U0R7_PYRFU 1 334 SEQRES 1 A 334 MET LYS VAL ARG ILE ALA THR TYR ALA SER HIS SER ALA SEQRES 2 A 334 LEU GLN ILE LEU LYS GLY ALA LYS ASP GLU GLY PHE GLU SEQRES 3 A 334 THR ILE ALA PHE GLY SER SER LYS VAL LYS PRO LEU TYR SEQRES 4 A 334 THR LYS TYR PHE PRO VAL ALA ASP TYR PHE ILE GLU GLU SEQRES 5 A 334 LYS TYR PRO GLU GLU GLU LEU LEU ASN LEU ASN ALA VAL SEQRES 6 A 334 VAL VAL PRO THR GLY SER PHE VAL ALA HIS LEU GLY ILE SEQRES 7 A 334 GLU LEU VAL GLU ASN MET LYS VAL PRO TYR PHE GLY ASN SEQRES 8 A 334 LYS ARG VAL LEU ARG TRP GLU SER ASP ARG ASN LEU GLU SEQRES 9 A 334 ARG LYS TRP LEU LYS LYS ALA GLY ILE ARG VAL PRO GLU SEQRES 10 A 334 VAL TYR GLU ASP PRO ASP ASP ILE GLU LYS PRO VAL ILE SEQRES 11 A 334 VAL LYS PRO HIS GLY ALA LYS GLY GLY LYS GLY TYR PHE SEQRES 12 A 334 LEU ALA LYS ASP PRO GLU ASP PHE TRP ARG LYS ALA GLU SEQRES 13 A 334 LYS PHE LEU GLY ILE LYS ARG LYS GLU ASP LEU LYS ASN SEQRES 14 A 334 ILE GLN ILE GLN GLU TYR VAL LEU GLY VAL PRO VAL TYR SEQRES 15 A 334 PRO HIS TYR PHE TYR SER LYS VAL ARG GLU GLU LEU GLU SEQRES 16 A 334 LEU MET SER ILE ASP ARG ARG TYR GLU SER ASN VAL ASP SEQRES 17 A 334 ALA ILE GLY ARG ILE PRO ALA LYS ASP GLN LEU GLU PHE SEQRES 18 A 334 ASP MET ASP ILE THR TYR THR VAL ILE GLY ASN ILE PRO SEQRES 19 A 334 ILE VAL LEU ARG GLU SER LEU LEU MET ASP VAL ILE GLU SEQRES 20 A 334 ALA GLY GLU ARG VAL VAL LYS ALA ALA GLU GLU LEU MET SEQRES 21 A 334 GLY GLY LEU TRP GLY PRO PHE CYS LEU GLU GLY VAL PHE SEQRES 22 A 334 THR PRO ASP LEU GLU PHE VAL VAL PHE GLU ILE SER ALA SEQRES 23 A 334 ARG ILE VAL ALA GLY THR ASN ILE PHE VAL ASN GLY SER SEQRES 24 A 334 PRO TYR THR TRP LEU ARG TYR ASP ARG PRO VAL SER THR SEQRES 25 A 334 GLY ARG ARG ILE ALA MET GLU ILE ARG GLU ALA ILE GLU SEQRES 26 A 334 ASN ASP MET LEU GLU LYS VAL LEU THR SEQRES 1 B 334 MET LYS VAL ARG ILE ALA THR TYR ALA SER HIS SER ALA SEQRES 2 B 334 LEU GLN ILE LEU LYS GLY ALA LYS ASP GLU GLY PHE GLU SEQRES 3 B 334 THR ILE ALA PHE GLY SER SER LYS VAL LYS PRO LEU TYR SEQRES 4 B 334 THR LYS TYR PHE PRO VAL ALA ASP TYR PHE ILE GLU GLU SEQRES 5 B 334 LYS TYR PRO GLU GLU GLU LEU LEU ASN LEU ASN ALA VAL SEQRES 6 B 334 VAL VAL PRO THR GLY SER PHE VAL ALA HIS LEU GLY ILE SEQRES 7 B 334 GLU LEU VAL GLU ASN MET LYS VAL PRO TYR PHE GLY ASN SEQRES 8 B 334 LYS ARG VAL LEU ARG TRP GLU SER ASP ARG ASN LEU GLU SEQRES 9 B 334 ARG LYS TRP LEU LYS LYS ALA GLY ILE ARG VAL PRO GLU SEQRES 10 B 334 VAL TYR GLU ASP PRO ASP ASP ILE GLU LYS PRO VAL ILE SEQRES 11 B 334 VAL LYS PRO HIS GLY ALA LYS GLY GLY LYS GLY TYR PHE SEQRES 12 B 334 LEU ALA LYS ASP PRO GLU ASP PHE TRP ARG LYS ALA GLU SEQRES 13 B 334 LYS PHE LEU GLY ILE LYS ARG LYS GLU ASP LEU LYS ASN SEQRES 14 B 334 ILE GLN ILE GLN GLU TYR VAL LEU GLY VAL PRO VAL TYR SEQRES 15 B 334 PRO HIS TYR PHE TYR SER LYS VAL ARG GLU GLU LEU GLU SEQRES 16 B 334 LEU MET SER ILE ASP ARG ARG TYR GLU SER ASN VAL ASP SEQRES 17 B 334 ALA ILE GLY ARG ILE PRO ALA LYS ASP GLN LEU GLU PHE SEQRES 18 B 334 ASP MET ASP ILE THR TYR THR VAL ILE GLY ASN ILE PRO SEQRES 19 B 334 ILE VAL LEU ARG GLU SER LEU LEU MET ASP VAL ILE GLU SEQRES 20 B 334 ALA GLY GLU ARG VAL VAL LYS ALA ALA GLU GLU LEU MET SEQRES 21 B 334 GLY GLY LEU TRP GLY PRO PHE CYS LEU GLU GLY VAL PHE SEQRES 22 B 334 THR PRO ASP LEU GLU PHE VAL VAL PHE GLU ILE SER ALA SEQRES 23 B 334 ARG ILE VAL ALA GLY THR ASN ILE PHE VAL ASN GLY SER SEQRES 24 B 334 PRO TYR THR TRP LEU ARG TYR ASP ARG PRO VAL SER THR SEQRES 25 B 334 GLY ARG ARG ILE ALA MET GLU ILE ARG GLU ALA ILE GLU SEQRES 26 B 334 ASN ASP MET LEU GLU LYS VAL LEU THR HET PO4 A 401 5 HET PO4 A 402 5 HET NA A 600 1 HET ATP A 400 31 HET MPD A 500 8 HET MPD A 501 8 HET PO4 B 401 5 HET PO4 B 402 5 HET NA B 600 1 HET ATP B 400 31 HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 NA 2(NA 1+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 MPD 2(C6 H14 O2) FORMUL 13 HOH *133(H2 O) HELIX 1 1 SER A 12 GLU A 23 1 12 HELIX 2 2 SER A 32 LYS A 34 5 3 HELIX 3 3 VAL A 35 LYS A 41 1 7 HELIX 4 4 PRO A 55 LEU A 62 1 8 HELIX 5 5 SER A 71 GLY A 77 1 7 HELIX 6 6 GLY A 77 ASN A 83 1 7 HELIX 7 7 ARG A 93 ASP A 100 1 8 HELIX 8 8 ASP A 100 ALA A 111 1 12 HELIX 9 9 ASP A 121 ILE A 125 5 5 HELIX 10 10 ASP A 147 GLY A 160 1 14 HELIX 11 11 ARG A 163 LEU A 167 5 5 HELIX 12 12 ALA A 209 ILE A 213 5 5 HELIX 13 13 PRO A 214 GLU A 220 1 7 HELIX 14 14 ARG A 238 SER A 240 5 3 HELIX 15 15 LEU A 241 MET A 260 1 20 HELIX 16 16 VAL A 289 VAL A 296 5 8 HELIX 17 17 TYR A 301 ARG A 305 5 5 HELIX 18 18 SER A 311 ASN A 326 1 16 HELIX 19 19 MET A 328 LYS A 331 5 4 HELIX 20 20 SER B 12 GLU B 23 1 12 HELIX 21 21 SER B 32 LYS B 34 5 3 HELIX 22 22 VAL B 35 LYS B 41 1 7 HELIX 23 23 PRO B 55 LEU B 62 1 8 HELIX 24 24 SER B 71 GLY B 77 1 7 HELIX 25 25 GLY B 77 ASN B 83 1 7 HELIX 26 26 ARG B 93 ASP B 100 1 8 HELIX 27 27 ASP B 100 ALA B 111 1 12 HELIX 28 28 ASP B 121 ILE B 125 5 5 HELIX 29 29 ASP B 147 PHE B 158 1 12 HELIX 30 30 VAL B 207 GLY B 211 1 5 HELIX 31 31 PRO B 214 GLU B 220 1 7 HELIX 32 32 ARG B 238 SER B 240 5 3 HELIX 33 33 LEU B 241 MET B 260 1 20 HELIX 34 34 VAL B 289 VAL B 296 5 8 HELIX 35 35 TYR B 301 ARG B 305 5 5 HELIX 36 36 SER B 311 ASN B 326 1 16 HELIX 37 37 MET B 328 LYS B 331 5 4 SHEET 1 A 4 TYR A 48 ILE A 50 0 SHEET 2 A 4 THR A 27 PHE A 30 1 N ALA A 29 O TYR A 48 SHEET 3 A 4 ARG A 4 TYR A 8 1 N ILE A 5 O ILE A 28 SHEET 4 A 4 ALA A 64 VAL A 66 1 O VAL A 65 N ALA A 6 SHEET 1 B 2 TYR A 88 PHE A 89 0 SHEET 2 B 2 LEU A 333 THR A 334 -1 O THR A 334 N TYR A 88 SHEET 1 C 4 VAL A 118 TYR A 119 0 SHEET 2 C 4 ILE A 170 GLU A 174 -1 O ILE A 172 N TYR A 119 SHEET 3 C 4 VAL A 129 PRO A 133 -1 N ILE A 130 O GLN A 173 SHEET 4 C 4 PHE A 143 ALA A 145 -1 O ALA A 145 N VAL A 129 SHEET 1 D 5 TYR A 227 PRO A 234 0 SHEET 2 D 5 GLU A 193 ASN A 206 -1 N TYR A 203 O ILE A 230 SHEET 3 D 5 VAL A 179 SER A 188 -1 N HIS A 184 O SER A 198 SHEET 4 D 5 GLY A 265 PHE A 273 -1 O GLY A 265 N TYR A 187 SHEET 5 D 5 PHE A 279 SER A 285 -1 O GLU A 283 N GLU A 270 SHEET 1 E 4 TYR B 48 ILE B 50 0 SHEET 2 E 4 THR B 27 PHE B 30 1 N ALA B 29 O TYR B 48 SHEET 3 E 4 ARG B 4 TYR B 8 1 N ILE B 5 O ILE B 28 SHEET 4 E 4 ALA B 64 VAL B 66 1 O VAL B 65 N ALA B 6 SHEET 1 F 2 TYR B 88 PHE B 89 0 SHEET 2 F 2 LEU B 333 THR B 334 -1 O THR B 334 N TYR B 88 SHEET 1 G 3 PHE B 143 ALA B 145 0 SHEET 2 G 3 VAL B 129 LYS B 132 -1 N VAL B 129 O ALA B 145 SHEET 3 G 3 GLN B 171 GLU B 174 -1 O GLN B 173 N ILE B 130 SHEET 1 H 5 TYR B 227 PRO B 234 0 SHEET 2 H 5 GLU B 193 ASN B 206 -1 N ARG B 201 O ILE B 233 SHEET 3 H 5 VAL B 179 SER B 188 -1 N HIS B 184 O SER B 198 SHEET 4 H 5 GLY B 265 PHE B 273 -1 O GLY B 265 N TYR B 187 SHEET 5 H 5 PHE B 279 SER B 285 -1 O SER B 285 N CYS B 268 LINK O GLU A 98 NA NA A 600 1555 1555 2.58 LINK O ILE A 284 NA NA A 600 1555 1555 2.60 LINK NA NA A 600 O HOH A 601 1555 1555 2.72 LINK NA NA A 600 O HOH A 673 1555 1555 2.55 LINK O GLU B 98 NA NA B 600 1555 1555 2.58 LINK O ILE B 284 NA NA B 600 1555 1555 2.64 CISPEP 1 HIS A 134 GLY A 135 0 -4.22 CISPEP 2 SER A 205 ASN A 206 0 8.36 CISPEP 3 SER B 205 ASN B 206 0 7.07 SITE 1 AC1 7 SER A 10 SER A 71 HIS A 75 ARG A 238 SITE 2 AC1 7 SER A 240 HOH A 642 HOH A 668 SITE 1 AC2 9 HIS A 11 ARG A 202 ARG A 287 ALA A 290 SITE 2 AC2 9 HOH A 612 HOH A 644 HOH A 664 HOH A 665 SITE 3 AC2 9 HOH A 667 SITE 1 AC3 5 GLU A 98 GLU A 104 ILE A 284 HOH A 601 SITE 2 AC3 5 HOH A 673 SITE 1 AC4 6 SER B 10 SER B 71 HIS B 75 ARG B 238 SITE 2 AC4 6 SER B 240 HOH B 603 SITE 1 AC5 6 HIS B 11 ARG B 202 ARG B 287 ALA B 290 SITE 2 AC5 6 HOH B 611 HOH B 618 SITE 1 AC6 3 GLU B 98 GLU B 104 ILE B 284 SITE 1 AC7 13 PRO A 116 LYS A 132 ALA A 136 GLY A 138 SITE 2 AC7 13 TYR A 142 GLN A 173 GLU A 174 TYR A 175 SITE 3 AC7 13 PHE A 282 GLU A 283 HOH A 663 HOH A 687 SITE 4 AC7 13 HOH A 691 SITE 1 AC8 9 PRO B 116 LYS B 132 TYR B 142 GLN B 173 SITE 2 AC8 9 GLU B 174 ARG B 212 TYR B 227 PHE B 282 SITE 3 AC8 9 HOH B 642 SITE 1 AC9 4 ILE A 130 TYR A 142 ASP A 217 TYR A 227 SITE 1 BC1 3 TYR A 175 LEU A 177 PHE A 221 CRYST1 122.477 122.477 560.925 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008165 0.004714 0.000000 0.00000 SCALE2 0.000000 0.009428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001783 0.00000