PDB Short entry for 2R9U HEADER IMMUNE SYSTEM 13-SEP-07 2R9U TITLE CRYSTAL STRUCTURE OF LAMPREY VARIABLE LYMPHOCYTE RECEPTOR 2913 TITLE 2 ECTODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIABLE LYMPHOCYTE RECEPTOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PETROMYZON MARINUS; SOURCE 3 ORGANISM_COMMON: SEA LAMPREY; SOURCE 4 ORGANISM_TAXID: 7757; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HI 5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRAL EXPRESSION; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAC6 KEYWDS ADAPTIVE IMMUNITY, VLR, LEUCINE-RICH REPEAT, LRR, RECEPTOR, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.W.HAN,B.R.HERRIN,J.CHOE,M.D.COOPER,I.A.WILSON REVDAT 3 30-AUG-23 2R9U 1 SEQADV REVDAT 2 13-JUL-11 2R9U 1 VERSN REVDAT 1 10-MAR-09 2R9U 0 JRNL AUTH B.W.HAN,B.R.HERRIN,G.M.MORRIS,J.CHOE,M.D.COOPER,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF LAMPREY VARIABLE LYMPHOCYTE RECEPTOR JRNL TITL 2 2913 ECTODOMAIN. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 41594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2618 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 321 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.91000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : -2.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.36000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.270 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.135 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5665 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3740 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7755 ; 1.654 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9137 ; 1.068 ; 3.007 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;39.543 ;25.075 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 923 ;13.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;23.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 872 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6313 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1063 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1143 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4153 ; 0.210 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2838 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2982 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 318 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.269 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.309 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4400 ; 1.540 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1383 ; 0.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5715 ; 2.272 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2498 ; 4.526 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2033 ; 5.945 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 17 B 190 1 REMARK 3 1 A 17 A 190 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 2296 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 1 B (A**2): 2296 ; 0.210 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : C A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 17 C 190 1 REMARK 3 1 A 17 A 190 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 C (A): 2296 ; 0.040 ; 0.050 REMARK 3 TIGHT THERMAL 2 C (A**2): 2296 ; 0.190 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : D A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 D 17 D 190 1 REMARK 3 1 A 17 A 190 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 3 D (A): 2290 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 3 D (A**2): 2290 ; 0.220 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0120 31.8610 53.5020 REMARK 3 T TENSOR REMARK 3 T11: -0.0788 T22: 0.0992 REMARK 3 T33: 0.0854 T12: 0.0057 REMARK 3 T13: -0.0928 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.4815 L22: 2.8240 REMARK 3 L33: 1.6112 L12: 0.7239 REMARK 3 L13: 0.5684 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: -0.0217 S13: -0.0915 REMARK 3 S21: -0.0279 S22: 0.0170 S23: 0.0514 REMARK 3 S31: 0.0416 S32: -0.0584 S33: -0.0230 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): 43.6350 38.5460 82.7770 REMARK 3 T TENSOR REMARK 3 T11: -0.0543 T22: 0.1227 REMARK 3 T33: 0.0889 T12: -0.0151 REMARK 3 T13: -0.0877 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8367 L22: 2.1540 REMARK 3 L33: 2.8498 L12: 0.1779 REMARK 3 L13: 0.7486 L23: 0.2400 REMARK 3 S TENSOR REMARK 3 S11: -0.0446 S12: 0.0171 S13: 0.0386 REMARK 3 S21: -0.0951 S22: 0.0448 S23: -0.0468 REMARK 3 S31: -0.1253 S32: 0.1473 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 190 REMARK 3 ORIGIN FOR THE GROUP (A): 70.2990 60.4800 87.0260 REMARK 3 T TENSOR REMARK 3 T11: -0.0427 T22: 0.1065 REMARK 3 T33: 0.0887 T12: -0.0066 REMARK 3 T13: -0.0985 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 1.3983 L22: 2.6234 REMARK 3 L33: 1.8932 L12: -0.9454 REMARK 3 L13: 0.6258 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: 0.0347 S13: -0.0804 REMARK 3 S21: -0.0067 S22: -0.0277 S23: -0.0226 REMARK 3 S31: 0.0934 S32: 0.0172 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 17 D 190 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5710 66.9730 57.6260 REMARK 3 T TENSOR REMARK 3 T11: -0.0380 T22: 0.1156 REMARK 3 T33: 0.0804 T12: 0.0127 REMARK 3 T13: -0.0899 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.7301 L22: 2.5513 REMARK 3 L33: 1.5870 L12: -0.1621 REMARK 3 L13: 0.3534 L23: -0.8166 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: -0.0200 S13: 0.0403 REMARK 3 S21: 0.1838 S22: 0.0028 S23: 0.0389 REMARK 3 S31: 0.0411 S32: -0.0799 S33: -0.0312 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044605. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARUSA MARMOSAIC -325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43844 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CASPR REMARK 200 STARTING MODEL: PDB ENTRY 2O6R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0-2.4 M NAH2PO4/K2HPO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.52850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS NOT CLEAR YET. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 114 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 53 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 22 129.24 -23.09 REMARK 500 ASN A 83 -159.18 -124.38 REMARK 500 LEU A 96 57.72 -92.85 REMARK 500 ASN A 107 -163.67 -119.89 REMARK 500 LYS A 189 49.41 -100.88 REMARK 500 CYS B 22 134.74 -23.86 REMARK 500 ASN B 59 -157.81 -135.22 REMARK 500 LEU B 72 57.61 -90.07 REMARK 500 ASN B 83 -158.39 -124.18 REMARK 500 LEU B 96 56.16 -91.97 REMARK 500 ASN B 107 -160.42 -117.39 REMARK 500 LEU B 120 57.12 -90.36 REMARK 500 LYS B 189 51.12 -103.07 REMARK 500 CYS C 22 127.95 -23.23 REMARK 500 ASN C 83 -166.85 -128.71 REMARK 500 ASN C 107 -165.95 -120.90 REMARK 500 LYS C 189 52.37 -100.42 REMARK 500 CYS D 22 132.02 -26.02 REMARK 500 ASN D 59 -152.92 -133.06 REMARK 500 LEU D 72 54.92 -92.64 REMARK 500 LEU D 96 54.80 -93.65 REMARK 500 ASN D 107 -162.43 -122.46 REMARK 500 LEU D 120 56.70 -91.91 REMARK 500 LYS D 189 48.88 -100.74 REMARK 500 REMARK 500 REMARK: NULL DBREF 2R9U A 22 190 UNP Q6E4B4 Q6E4B4_PETMA 22 190 DBREF 2R9U B 22 190 UNP Q6E4B4 Q6E4B4_PETMA 22 190 DBREF 2R9U C 22 190 UNP Q6E4B4 Q6E4B4_PETMA 22 190 DBREF 2R9U D 22 190 UNP Q6E4B4 Q6E4B4_PETMA 22 190 SEQADV 2R9U HIS A 17 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS A 18 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U SER A 19 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U ALA A 20 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U GLY A 21 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS B 17 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS B 18 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U SER B 19 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U ALA B 20 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U GLY B 21 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS C 17 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS C 18 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U SER C 19 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U ALA C 20 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U GLY C 21 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS D 17 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U HIS D 18 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U SER D 19 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U ALA D 20 UNP Q6E4B4 EXPRESSION TAG SEQADV 2R9U GLY D 21 UNP Q6E4B4 EXPRESSION TAG SEQRES 1 A 174 HIS HIS SER ALA GLY CYS PRO SER GLN CYS SER CYS ASP SEQRES 2 A 174 GLN THR LEU VAL ASN CYS GLN ASN ILE ARG LEU ALA SER SEQRES 3 A 174 VAL PRO ALA GLY ILE PRO THR ASP LYS GLN ARG LEU TRP SEQRES 4 A 174 LEU ASN ASN ASN GLN ILE THR LYS LEU GLU PRO GLY VAL SEQRES 5 A 174 PHE ASP HIS LEU VAL ASN LEU GLN GLN LEU TYR PHE ASN SEQRES 6 A 174 SER ASN LYS LEU THR ALA ILE PRO THR GLY VAL PHE ASP SEQRES 7 A 174 LYS LEU THR GLN LEU THR GLN LEU ASP LEU ASN ASP ASN SEQRES 8 A 174 HIS LEU LYS SER ILE PRO ARG GLY ALA PHE ASP ASN LEU SEQRES 9 A 174 LYS SER LEU THR HIS ILE TYR LEU TYR ASN ASN PRO TRP SEQRES 10 A 174 ASP CYS GLU CYS ARG ASP ILE MET TYR LEU ARG ASN TRP SEQRES 11 A 174 VAL ALA ASP HIS THR SER ILE VAL MET ARG TRP ASP GLY SEQRES 12 A 174 LYS ALA VAL ASN ASP PRO ASP SER ALA LYS CYS ALA GLY SEQRES 13 A 174 THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SER THR SEQRES 14 A 174 SER PRO SER LYS CYS SEQRES 1 B 174 HIS HIS SER ALA GLY CYS PRO SER GLN CYS SER CYS ASP SEQRES 2 B 174 GLN THR LEU VAL ASN CYS GLN ASN ILE ARG LEU ALA SER SEQRES 3 B 174 VAL PRO ALA GLY ILE PRO THR ASP LYS GLN ARG LEU TRP SEQRES 4 B 174 LEU ASN ASN ASN GLN ILE THR LYS LEU GLU PRO GLY VAL SEQRES 5 B 174 PHE ASP HIS LEU VAL ASN LEU GLN GLN LEU TYR PHE ASN SEQRES 6 B 174 SER ASN LYS LEU THR ALA ILE PRO THR GLY VAL PHE ASP SEQRES 7 B 174 LYS LEU THR GLN LEU THR GLN LEU ASP LEU ASN ASP ASN SEQRES 8 B 174 HIS LEU LYS SER ILE PRO ARG GLY ALA PHE ASP ASN LEU SEQRES 9 B 174 LYS SER LEU THR HIS ILE TYR LEU TYR ASN ASN PRO TRP SEQRES 10 B 174 ASP CYS GLU CYS ARG ASP ILE MET TYR LEU ARG ASN TRP SEQRES 11 B 174 VAL ALA ASP HIS THR SER ILE VAL MET ARG TRP ASP GLY SEQRES 12 B 174 LYS ALA VAL ASN ASP PRO ASP SER ALA LYS CYS ALA GLY SEQRES 13 B 174 THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SER THR SEQRES 14 B 174 SER PRO SER LYS CYS SEQRES 1 C 174 HIS HIS SER ALA GLY CYS PRO SER GLN CYS SER CYS ASP SEQRES 2 C 174 GLN THR LEU VAL ASN CYS GLN ASN ILE ARG LEU ALA SER SEQRES 3 C 174 VAL PRO ALA GLY ILE PRO THR ASP LYS GLN ARG LEU TRP SEQRES 4 C 174 LEU ASN ASN ASN GLN ILE THR LYS LEU GLU PRO GLY VAL SEQRES 5 C 174 PHE ASP HIS LEU VAL ASN LEU GLN GLN LEU TYR PHE ASN SEQRES 6 C 174 SER ASN LYS LEU THR ALA ILE PRO THR GLY VAL PHE ASP SEQRES 7 C 174 LYS LEU THR GLN LEU THR GLN LEU ASP LEU ASN ASP ASN SEQRES 8 C 174 HIS LEU LYS SER ILE PRO ARG GLY ALA PHE ASP ASN LEU SEQRES 9 C 174 LYS SER LEU THR HIS ILE TYR LEU TYR ASN ASN PRO TRP SEQRES 10 C 174 ASP CYS GLU CYS ARG ASP ILE MET TYR LEU ARG ASN TRP SEQRES 11 C 174 VAL ALA ASP HIS THR SER ILE VAL MET ARG TRP ASP GLY SEQRES 12 C 174 LYS ALA VAL ASN ASP PRO ASP SER ALA LYS CYS ALA GLY SEQRES 13 C 174 THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SER THR SEQRES 14 C 174 SER PRO SER LYS CYS SEQRES 1 D 174 HIS HIS SER ALA GLY CYS PRO SER GLN CYS SER CYS ASP SEQRES 2 D 174 GLN THR LEU VAL ASN CYS GLN ASN ILE ARG LEU ALA SER SEQRES 3 D 174 VAL PRO ALA GLY ILE PRO THR ASP LYS GLN ARG LEU TRP SEQRES 4 D 174 LEU ASN ASN ASN GLN ILE THR LYS LEU GLU PRO GLY VAL SEQRES 5 D 174 PHE ASP HIS LEU VAL ASN LEU GLN GLN LEU TYR PHE ASN SEQRES 6 D 174 SER ASN LYS LEU THR ALA ILE PRO THR GLY VAL PHE ASP SEQRES 7 D 174 LYS LEU THR GLN LEU THR GLN LEU ASP LEU ASN ASP ASN SEQRES 8 D 174 HIS LEU LYS SER ILE PRO ARG GLY ALA PHE ASP ASN LEU SEQRES 9 D 174 LYS SER LEU THR HIS ILE TYR LEU TYR ASN ASN PRO TRP SEQRES 10 D 174 ASP CYS GLU CYS ARG ASP ILE MET TYR LEU ARG ASN TRP SEQRES 11 D 174 VAL ALA ASP HIS THR SER ILE VAL MET ARG TRP ASP GLY SEQRES 12 D 174 LYS ALA VAL ASN ASP PRO ASP SER ALA LYS CYS ALA GLY SEQRES 13 D 174 THR ASN THR PRO VAL ARG ALA VAL THR GLU ALA SER THR SEQRES 14 D 174 SER PRO SER LYS CYS FORMUL 5 HOH *321(H2 O) HELIX 1 1 CYS A 137 ASP A 139 5 3 HELIX 2 2 ILE A 140 HIS A 150 1 11 HELIX 3 3 PRO A 165 ALA A 168 5 4 HELIX 4 4 PRO A 176 VAL A 180 5 5 HELIX 5 5 THR A 181 THR A 185 5 5 HELIX 6 6 CYS B 137 ASP B 139 5 3 HELIX 7 7 ILE B 140 HIS B 150 1 11 HELIX 8 8 THR B 151 ILE B 153 5 3 HELIX 9 9 PRO B 176 VAL B 180 5 5 HELIX 10 10 THR B 181 THR B 185 5 5 HELIX 11 11 CYS C 137 ASP C 139 5 3 HELIX 12 12 ILE C 140 HIS C 150 1 11 HELIX 13 13 PRO C 165 ALA C 168 5 4 HELIX 14 14 PRO C 176 VAL C 180 5 5 HELIX 15 15 THR C 181 THR C 185 5 5 HELIX 16 16 CYS D 137 ASP D 139 5 3 HELIX 17 17 ILE D 140 HIS D 150 1 11 HELIX 18 18 PRO D 165 ALA D 168 5 4 HELIX 19 19 PRO D 176 VAL D 180 5 5 HELIX 20 20 THR D 181 THR D 185 5 5 SHEET 1 A 8 SER A 27 CYS A 28 0 SHEET 2 A 8 LEU A 32 ASN A 34 -1 O ASN A 34 N SER A 27 SHEET 3 A 8 ARG A 53 TRP A 55 1 O ARG A 53 N VAL A 33 SHEET 4 A 8 GLN A 77 TYR A 79 1 O GLN A 77 N LEU A 54 SHEET 5 A 8 GLN A 101 ASP A 103 1 O GLN A 101 N LEU A 78 SHEET 6 A 8 HIS A 125 TYR A 127 1 O TYR A 127 N LEU A 102 SHEET 7 A 8 VAL A 154 TRP A 157 1 O MET A 155 N ILE A 126 SHEET 8 A 8 ALA A 161 ASN A 163 -1 O VAL A 162 N ARG A 156 SHEET 1 B 6 SER B 27 CYS B 28 0 SHEET 2 B 6 LEU B 32 ASN B 34 -1 O ASN B 34 N SER B 27 SHEET 3 B 6 ARG B 53 TRP B 55 1 O ARG B 53 N VAL B 33 SHEET 4 B 6 GLN B 77 TYR B 79 1 O TYR B 79 N LEU B 54 SHEET 5 B 6 GLN B 101 ASP B 103 1 O ASP B 103 N LEU B 78 SHEET 6 B 6 HIS B 125 TYR B 127 1 O TYR B 127 N LEU B 102 SHEET 1 C 2 MET B 155 TRP B 157 0 SHEET 2 C 2 ALA B 161 ASN B 163 -1 O VAL B 162 N ARG B 156 SHEET 1 D 8 SER C 27 CYS C 28 0 SHEET 2 D 8 LEU C 32 ASN C 34 -1 O ASN C 34 N SER C 27 SHEET 3 D 8 ARG C 53 TRP C 55 1 O ARG C 53 N VAL C 33 SHEET 4 D 8 GLN C 77 TYR C 79 1 O GLN C 77 N LEU C 54 SHEET 5 D 8 GLN C 101 ASP C 103 1 O GLN C 101 N LEU C 78 SHEET 6 D 8 HIS C 125 TYR C 127 1 O TYR C 127 N LEU C 102 SHEET 7 D 8 VAL C 154 TRP C 157 1 O MET C 155 N ILE C 126 SHEET 8 D 8 ALA C 161 ASN C 163 -1 O VAL C 162 N ARG C 156 SHEET 1 E 8 SER D 27 CYS D 28 0 SHEET 2 E 8 LEU D 32 ASN D 34 -1 O ASN D 34 N SER D 27 SHEET 3 E 8 ARG D 53 TRP D 55 1 O ARG D 53 N VAL D 33 SHEET 4 E 8 GLN D 77 TYR D 79 1 O TYR D 79 N LEU D 54 SHEET 5 E 8 GLN D 101 ASP D 103 1 O GLN D 101 N LEU D 78 SHEET 6 E 8 HIS D 125 TYR D 127 1 O HIS D 125 N LEU D 102 SHEET 7 E 8 VAL D 154 TRP D 157 1 O MET D 155 N ILE D 126 SHEET 8 E 8 ALA D 161 ASN D 163 -1 O VAL D 162 N ARG D 156 SSBOND 1 CYS A 22 CYS A 28 1555 1555 2.06 SSBOND 2 CYS A 26 CYS A 35 1555 1555 2.06 SSBOND 3 CYS A 135 CYS A 170 1555 1555 2.04 SSBOND 4 CYS A 137 CYS A 190 1555 1555 2.04 SSBOND 5 CYS B 22 CYS B 28 1555 1555 2.05 SSBOND 6 CYS B 26 CYS B 35 1555 1555 2.08 SSBOND 7 CYS B 135 CYS B 170 1555 1555 2.06 SSBOND 8 CYS B 137 CYS B 190 1555 1555 2.04 SSBOND 9 CYS C 22 CYS C 28 1555 1555 2.06 SSBOND 10 CYS C 26 CYS C 35 1555 1555 2.08 SSBOND 11 CYS C 135 CYS C 170 1555 1555 2.04 SSBOND 12 CYS C 137 CYS C 190 1555 1555 2.04 SSBOND 13 CYS D 22 CYS D 28 1555 1555 2.07 SSBOND 14 CYS D 26 CYS D 35 1555 1555 2.08 SSBOND 15 CYS D 135 CYS D 170 1555 1555 2.04 SSBOND 16 CYS D 137 CYS D 190 1555 1555 2.04 CRYST1 72.109 61.057 98.081 90.00 107.35 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013868 0.000000 0.004333 0.00000 SCALE2 0.000000 0.016378 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010682 0.00000