PDB Short entry for 2RBD HEADER STRUCTURAL PROTEIN 18-SEP-07 2RBD TITLE CRYSTAL STRUCTURE OF A PUTATIVE SPORE COAT PROTEIN (BH2358) FROM TITLE 2 BACILLUS HALODURANS C-125 AT 1.54 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH2358 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS HALODURANS C-125; SOURCE 3 ORGANISM_TAXID: 272558; SOURCE 4 STRAIN: C-125, DSM 18197, FERM 7344, JCM 9153; SOURCE 5 ATCC: BAA-125; SOURCE 6 GENE: NP_243224.1, BH2358; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE SPORE COAT PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 25-JAN-23 2RBD 1 REMARK SEQADV REVDAT 5 24-JUL-19 2RBD 1 REMARK LINK REVDAT 4 25-OCT-17 2RBD 1 REMARK REVDAT 3 28-JUL-10 2RBD 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2RBD 1 VERSN REVDAT 1 02-OCT-07 2RBD 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A DOMAIN WITH UNKNOWN FUNCTION AND A JRNL TITL 2 FERRITIN-LIKE FOLD (NP_243224.1) FROM BACILLUS HALODURANS AT JRNL TITL 3 1.54 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 206 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 429 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.91000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2747 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1879 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3783 ; 1.452 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4671 ; 0.954 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 4.754 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;41.293 ;25.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;13.705 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3135 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 505 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 660 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1934 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1355 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1407 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 306 ; 0.170 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.234 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 82 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1831 ; 2.251 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 670 ; 0.612 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2787 ; 2.866 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1124 ; 4.819 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 955 ; 7.046 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 10 A 164 4 REMARK 3 1 B 10 B 164 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1936 ; 0.360 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1936 ; 1.240 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.80 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. PG4 (PEG 200) MOLECULES FROM THE CRYSTALLIZATION SOLUTION REMARK 3 WERE MODELED. PG4 3 IS LOCATED ON 2-FOLD AXIS, IT COULD REMARK 3 BE A NOISE. REMARK 3 4. RESIDUES A0-6, B0-9, A/B166-170 ARE DISORDERED AND NOT REMARK 3 MODELED. DENSITIES NEAR A20 AND B20, N-TERMINUS, C-TERMINUS REMARK 3 WERE LEFT UNINTERPRETED. REMARK 4 REMARK 4 2RBD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97898, 0.97922 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 39.809 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : 0.68000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M LI3 CITRATE, 20.0% PEG REMARK 280 3350, NO BUFFER PH 8.1, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.54100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.90600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.17250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.90600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.54100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.17250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.54100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.17250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.90600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.17250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.54100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.90600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION REMARK 300 ON BURIED SURFACE AREA. REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A TETRAMER REMARK 300 AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11270 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 43.08200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 37.17250 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 PG4 A 172 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 216 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 284 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 237 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 272 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 ILE A 3 REMARK 465 LEU A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 166 REMARK 465 PRO A 167 REMARK 465 ILE A 168 REMARK 465 LYS A 169 REMARK 465 GLU A 170 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 ILE B 3 REMARK 465 LEU B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 ASN B 7 REMARK 465 PRO B 8 REMARK 465 GLN B 9 REMARK 465 ARG B 166 REMARK 465 PRO B 167 REMARK 465 ILE B 168 REMARK 465 LYS B 169 REMARK 465 GLU B 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 87 CD NE CZ NH1 NH2 REMARK 470 LYS A 112 CE NZ REMARK 470 GLN A 135 CD OE1 NE2 REMARK 470 ASP A 165 CG OD1 OD2 REMARK 470 ASP B 10 CG OD1 OD2 REMARK 470 LYS B 112 CD CE NZ REMARK 470 LYS B 149 CD CE NZ REMARK 470 ASP B 165 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 164 O HOH B 295 2.10 REMARK 500 ND2 ASN A 153 O HOH A 372 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 87 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 378013 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE REMARK 999 TARGET SEQUENCE. DBREF 2RBD A 1 170 UNP Q9KAD1 Q9KAD1_BACHD 1 170 DBREF 2RBD B 1 170 UNP Q9KAD1 Q9KAD1_BACHD 1 170 SEQADV 2RBD GLY A 0 UNP Q9KAD1 EXPRESSION TAG SEQADV 2RBD GLY B 0 UNP Q9KAD1 EXPRESSION TAG SEQRES 1 A 171 GLY MSE GLY ILE LEU SER GLY ASN PRO GLN ASP GLU PRO SEQRES 2 A 171 LEU HIS TYR GLY GLU VAL PHE SER THR TRP THR TYR LEU SEQRES 3 A 171 SER THR ASN ASN GLY LEU ILE ASN GLY TYR ARG SER PHE SEQRES 4 A 171 ILE ASN HIS THR GLY ASP GLU ASP LEU LYS ASN LEU ILE SEQRES 5 A 171 ASP GLU ALA ILE GLN ALA MSE GLN ASP GLU ASN HIS GLN SEQRES 6 A 171 LEU GLU GLU LEU LEU ARG SER ASN GLY VAL GLY LEU PRO SEQRES 7 A 171 PRO ALA PRO PRO ASP ARG PRO ALA ALA ARG LEU ASP ASP SEQRES 8 A 171 ILE PRO VAL GLY ALA ARG PHE ASN ASP PRO GLU ILE SER SEQRES 9 A 171 ALA THR ILE SER MSE ASP VAL ALA LYS GLY LEU VAL THR SEQRES 10 A 171 CYS SER GLN ILE ILE GLY GLN SER ILE ARG GLU ASP VAL SEQRES 11 A 171 ALA LEU MSE PHE SER GLN PHE HIS MSE ALA LYS VAL GLN SEQRES 12 A 171 PHE GLY GLY LYS MSE LEU LYS LEU ASN LYS ASN LYS GLY SEQRES 13 A 171 TRP LEU ILE PRO PRO PRO LEU HIS SER ASP ARG PRO ILE SEQRES 14 A 171 LYS GLU SEQRES 1 B 171 GLY MSE GLY ILE LEU SER GLY ASN PRO GLN ASP GLU PRO SEQRES 2 B 171 LEU HIS TYR GLY GLU VAL PHE SER THR TRP THR TYR LEU SEQRES 3 B 171 SER THR ASN ASN GLY LEU ILE ASN GLY TYR ARG SER PHE SEQRES 4 B 171 ILE ASN HIS THR GLY ASP GLU ASP LEU LYS ASN LEU ILE SEQRES 5 B 171 ASP GLU ALA ILE GLN ALA MSE GLN ASP GLU ASN HIS GLN SEQRES 6 B 171 LEU GLU GLU LEU LEU ARG SER ASN GLY VAL GLY LEU PRO SEQRES 7 B 171 PRO ALA PRO PRO ASP ARG PRO ALA ALA ARG LEU ASP ASP SEQRES 8 B 171 ILE PRO VAL GLY ALA ARG PHE ASN ASP PRO GLU ILE SER SEQRES 9 B 171 ALA THR ILE SER MSE ASP VAL ALA LYS GLY LEU VAL THR SEQRES 10 B 171 CYS SER GLN ILE ILE GLY GLN SER ILE ARG GLU ASP VAL SEQRES 11 B 171 ALA LEU MSE PHE SER GLN PHE HIS MSE ALA LYS VAL GLN SEQRES 12 B 171 PHE GLY GLY LYS MSE LEU LYS LEU ASN LYS ASN LYS GLY SEQRES 13 B 171 TRP LEU ILE PRO PRO PRO LEU HIS SER ASP ARG PRO ILE SEQRES 14 B 171 LYS GLU MODRES 2RBD MSE A 58 MET SELENOMETHIONINE MODRES 2RBD MSE A 108 MET SELENOMETHIONINE MODRES 2RBD MSE A 132 MET SELENOMETHIONINE MODRES 2RBD MSE A 138 MET SELENOMETHIONINE MODRES 2RBD MSE A 147 MET SELENOMETHIONINE MODRES 2RBD MSE B 58 MET SELENOMETHIONINE MODRES 2RBD MSE B 108 MET SELENOMETHIONINE MODRES 2RBD MSE B 132 MET SELENOMETHIONINE MODRES 2RBD MSE B 138 MET SELENOMETHIONINE MODRES 2RBD MSE B 147 MET SELENOMETHIONINE HET MSE A 58 8 HET MSE A 108 13 HET MSE A 132 8 HET MSE A 138 8 HET MSE A 147 8 HET MSE B 58 8 HET MSE B 108 13 HET MSE B 132 8 HET MSE B 138 13 HET MSE B 147 8 HET PG4 A 171 13 HET PG4 A 172 13 HET PG4 B 171 13 HETNAM MSE SELENOMETHIONINE HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 PG4 3(C8 H18 O5) FORMUL 6 HOH *429(H2 O) HELIX 1 1 ASN A 7 GLU A 11 5 5 HELIX 2 2 HIS A 14 THR A 42 1 29 HELIX 3 3 ASP A 44 ASN A 72 1 29 HELIX 4 4 ARG A 87 ILE A 91 5 5 HELIX 5 5 PRO A 92 ARG A 96 5 5 HELIX 6 6 ASN A 98 SER A 124 1 27 HELIX 7 7 ARG A 126 LYS A 154 1 29 HELIX 8 8 HIS B 14 THR B 42 1 29 HELIX 9 9 ASP B 44 ASN B 72 1 29 HELIX 10 10 ARG B 87 ILE B 91 5 5 HELIX 11 11 PRO B 92 ARG B 96 5 5 HELIX 12 12 ASN B 98 SER B 124 1 27 HELIX 13 13 ARG B 126 LYS B 154 1 29 LINK C ALA A 57 N MSE A 58 1555 1555 1.32 LINK C MSE A 58 N GLN A 59 1555 1555 1.33 LINK C SER A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N ASP A 109 1555 1555 1.31 LINK C LEU A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N PHE A 133 1555 1555 1.32 LINK C HIS A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ALA A 139 1555 1555 1.33 LINK C LYS A 146 N MSE A 147 1555 1555 1.34 LINK C MSE A 147 N LEU A 148 1555 1555 1.33 LINK C ALA B 57 N MSE B 58 1555 1555 1.32 LINK C MSE B 58 N GLN B 59 1555 1555 1.33 LINK C SER B 107 N MSE B 108 1555 1555 1.32 LINK C MSE B 108 N ASP B 109 1555 1555 1.32 LINK C LEU B 131 N MSE B 132 1555 1555 1.33 LINK C MSE B 132 N PHE B 133 1555 1555 1.33 LINK C HIS B 137 N MSE B 138 1555 1555 1.34 LINK C MSE B 138 N ALA B 139 1555 1555 1.33 LINK C LYS B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N LEU B 148 1555 1555 1.34 SITE 1 AC1 10 TYR B 24 THR B 27 ASN B 28 LEU B 31 SITE 2 AC1 10 ALA B 57 GLU B 61 ASP B 109 LYS B 140 SITE 3 AC1 10 PHE B 143 HOH B 196 SITE 1 AC2 10 TYR A 24 THR A 27 ASN A 28 ALA A 57 SITE 2 AC2 10 GLU A 61 ASP A 109 LYS A 140 PHE A 143 SITE 3 AC2 10 HOH A 254 HOH A 261 SITE 1 AC3 8 VAL A 115 GLN A 119 HOH A 219 HOH A 315 SITE 2 AC3 8 HOH A 354 HOH A 388 GLN B 119 HOH B 267 CRYST1 43.082 74.345 235.812 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023211 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004241 0.00000