PDB Short entry for 2RKU HEADER TRANSFERASE 17-OCT-07 2RKU TITLE STRUCTURE OF PLK1 IN COMPLEX WITH BI2536 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POLO-LIKE KINASE 1, PLK-1, SERINE/THREONINE-PROTEIN KINASE COMPND 5 13, STPK13; COMPND 6 EC: 2.7.11.21; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS STRUCTURE OF PLK1, SELECTIVITY RESIDUES, KINASE, POLO-LIKE KINASE, KEYWDS 2 STRUCTURE BASED DRUG DESIGN, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 3 NUCLEUS, PHOSPHORYLATION, SERINE/THREONINE-PROTEIN KINASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-H.DING,M.KOTHE,D.KOHLS,S.LOW REVDAT 6 21-FEB-24 2RKU 1 REMARK REVDAT 5 20-OCT-21 2RKU 1 REMARK SEQADV REVDAT 4 25-OCT-17 2RKU 1 REMARK REVDAT 3 13-JUL-11 2RKU 1 VERSN REVDAT 2 24-FEB-09 2RKU 1 VERSN REVDAT 1 05-FEB-08 2RKU 0 JRNL AUTH M.KOTHE,D.KOHLS,S.LOW,R.COLI,G.R.RENNIE,F.FERU,C.KUHN, JRNL AUTH 2 Y.-H.DING JRNL TITL SELECTIVITY-DETERMINING RESIDUES IN PLK1. JRNL REF CHEM.BIOL.DRUG DES. V. 70 540 2007 JRNL REFN ISSN 1747-0277 JRNL PMID 18005335 JRNL DOI 10.1111/J.1747-0285.2007.00594.X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 29416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1494 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2379 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.37000 REMARK 3 B22 (A**2) : 2.37000 REMARK 3 B33 (A**2) : -3.55000 REMARK 3 B12 (A**2) : 1.18000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.232 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2558 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3462 ; 1.438 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;34.619 ;22.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;14.890 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1929 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1119 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1755 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 265 ; 0.199 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.012 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 0.845 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2446 ; 1.351 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 2.185 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1016 ; 3.520 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -40.2378 -1.8107 3.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.3212 T22: 0.1678 REMARK 3 T33: -0.2158 T12: -0.1087 REMARK 3 T13: 0.2629 T23: 0.1141 REMARK 3 L TENSOR REMARK 3 L11: 13.6610 L22: 13.0700 REMARK 3 L33: 11.8916 L12: -2.0564 REMARK 3 L13: 6.1372 L23: 1.6663 REMARK 3 S TENSOR REMARK 3 S11: -1.7459 S12: -1.0295 S13: -0.9041 REMARK 3 S21: -0.1702 S22: 0.7168 S23: 0.1412 REMARK 3 S31: 0.0820 S32: -1.6849 S33: 1.0291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -41.9653 7.7123 6.7972 REMARK 3 T TENSOR REMARK 3 T11: -0.1207 T22: -0.2169 REMARK 3 T33: -0.1699 T12: -0.0590 REMARK 3 T13: 0.0537 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 1.1398 L22: 2.5081 REMARK 3 L33: 6.1352 L12: 0.6483 REMARK 3 L13: -1.6425 L23: -0.3816 REMARK 3 S TENSOR REMARK 3 S11: -0.1077 S12: 0.1684 S13: -0.1163 REMARK 3 S21: -0.0765 S22: -0.1325 S23: 0.1774 REMARK 3 S31: 0.7831 S32: -0.2912 S33: 0.2402 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -35.2718 23.5720 19.3793 REMARK 3 T TENSOR REMARK 3 T11: -0.2739 T22: -0.1477 REMARK 3 T33: -0.1498 T12: 0.0325 REMARK 3 T13: -0.0217 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 2.4487 L22: 1.7511 REMARK 3 L33: 5.6065 L12: -0.0316 REMARK 3 L13: -0.4016 L23: 0.3936 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.0585 S13: -0.0282 REMARK 3 S21: 0.1607 S22: 0.0579 S23: -0.1354 REMARK 3 S31: 0.0641 S32: 0.2433 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5824 34.3778 10.9320 REMARK 3 T TENSOR REMARK 3 T11: -0.1896 T22: -0.2040 REMARK 3 T33: -0.1323 T12: -0.0112 REMARK 3 T13: -0.0289 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 2.9048 L22: 0.9809 REMARK 3 L33: 6.4368 L12: -0.5113 REMARK 3 L13: -1.6760 L23: 0.4792 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: 0.1762 S13: 0.3805 REMARK 3 S21: -0.1045 S22: 0.0733 S23: -0.1101 REMARK 3 S31: -0.7222 S32: 0.0713 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -42.0269 40.7659 18.4090 REMARK 3 T TENSOR REMARK 3 T11: -0.1276 T22: -0.3127 REMARK 3 T33: -0.1448 T12: 0.0167 REMARK 3 T13: -0.0609 T23: -0.0595 REMARK 3 L TENSOR REMARK 3 L11: 3.5222 L22: 2.1400 REMARK 3 L33: 6.1711 L12: -0.0667 REMARK 3 L13: 1.7478 L23: -0.0639 REMARK 3 S TENSOR REMARK 3 S11: -0.3677 S12: -0.2599 S13: 0.6680 REMARK 3 S21: -0.0206 S22: 0.2258 S23: -0.1992 REMARK 3 S31: -0.9117 S32: -0.3115 S33: 0.1419 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): -40.4911 25.8842 37.3979 REMARK 3 T TENSOR REMARK 3 T11: -0.1500 T22: -0.0682 REMARK 3 T33: -0.2162 T12: 0.0589 REMARK 3 T13: -0.0095 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 4.0836 L22: 1.7111 REMARK 3 L33: 5.3953 L12: 1.3720 REMARK 3 L13: 0.7399 L23: -0.1778 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: -0.5493 S13: -0.1186 REMARK 3 S21: 0.5604 S22: -0.0010 S23: -0.0022 REMARK 3 S31: 0.2500 S32: -0.3905 S33: 0.0110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-08. REMARK 100 THE DEPOSITION ID IS D_1000044981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29527 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.74000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.37000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.37000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 102.74000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4670 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -99.88950 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 57.67123 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 732 O HOH A 733 1.97 REMARK 500 O HOH A 513 O HOH A 787 1.99 REMARK 500 OD2 ASP A 176 O HOH A 513 2.03 REMARK 500 O HOH A 687 O HOH A 761 2.10 REMARK 500 O HOH A 675 O HOH A 752 2.12 REMARK 500 O HOH A 508 O HOH A 697 2.18 REMARK 500 O HOH A 510 O HOH A 700 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 99 O ILE A 327 2564 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 42 CG GLU A 42 CD 0.117 REMARK 500 GLU A 42 CD GLU A 42 OE1 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 117.61 54.24 REMARK 500 ASP A 122 -161.58 -121.70 REMARK 500 ARG A 136 -125.32 60.55 REMARK 500 LYS A 146 -134.80 55.34 REMARK 500 ARG A 175 -2.57 75.93 REMARK 500 ASP A 176 37.18 -141.48 REMARK 500 ASP A 194 79.11 54.06 REMARK 500 SER A 229 -148.69 -150.19 REMARK 500 LEU A 286 30.33 -94.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 NE2 REMARK 620 2 CYS A 212 SG 118.1 REMARK 620 3 TLA A 502 O1 101.9 109.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R78 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SRT A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAR A 503 DBREF 2RKU A 37 330 UNP P53350 PLK1_HUMAN 37 330 SEQADV 2RKU VAL A 210 UNP P53350 THR 210 ENGINEERED MUTATION SEQRES 1 A 294 ALA LYS GLU ILE PRO GLU VAL LEU VAL ASP PRO ARG SER SEQRES 2 A 294 ARG ARG ARG TYR VAL ARG GLY ARG PHE LEU GLY LYS GLY SEQRES 3 A 294 GLY PHE ALA LYS CYS PHE GLU ILE SER ASP ALA ASP THR SEQRES 4 A 294 LYS GLU VAL PHE ALA GLY LYS ILE VAL PRO LYS SER LEU SEQRES 5 A 294 LEU LEU LYS PRO HIS GLN ARG GLU LYS MET SER MET GLU SEQRES 6 A 294 ILE SER ILE HIS ARG SER LEU ALA HIS GLN HIS VAL VAL SEQRES 7 A 294 GLY PHE HIS GLY PHE PHE GLU ASP ASN ASP PHE VAL PHE SEQRES 8 A 294 VAL VAL LEU GLU LEU CYS ARG ARG ARG SER LEU LEU GLU SEQRES 9 A 294 LEU HIS LYS ARG ARG LYS ALA LEU THR GLU PRO GLU ALA SEQRES 10 A 294 ARG TYR TYR LEU ARG GLN ILE VAL LEU GLY CYS GLN TYR SEQRES 11 A 294 LEU HIS ARG ASN ARG VAL ILE HIS ARG ASP LEU LYS LEU SEQRES 12 A 294 GLY ASN LEU PHE LEU ASN GLU ASP LEU GLU VAL LYS ILE SEQRES 13 A 294 GLY ASP PHE GLY LEU ALA THR LYS VAL GLU TYR ASP GLY SEQRES 14 A 294 GLU ARG LYS LYS VAL LEU CYS GLY THR PRO ASN TYR ILE SEQRES 15 A 294 ALA PRO GLU VAL LEU SER LYS LYS GLY HIS SER PHE GLU SEQRES 16 A 294 VAL ASP VAL TRP SER ILE GLY CYS ILE MET TYR THR LEU SEQRES 17 A 294 LEU VAL GLY LYS PRO PRO PHE GLU THR SER CYS LEU LYS SEQRES 18 A 294 GLU THR TYR LEU ARG ILE LYS LYS ASN GLU TYR SER ILE SEQRES 19 A 294 PRO LYS HIS ILE ASN PRO VAL ALA ALA SER LEU ILE GLN SEQRES 20 A 294 LYS MET LEU GLN THR ASP PRO THR ALA ARG PRO THR ILE SEQRES 21 A 294 ASN GLU LEU LEU ASN ASP GLU PHE PHE THR SER GLY TYR SEQRES 22 A 294 ILE PRO ALA ARG LEU PRO ILE THR CYS LEU THR ILE PRO SEQRES 23 A 294 PRO ARG PHE SER ILE ALA PRO SER HET ZN A 501 1 HET R78 A 500 38 HET TLA A 502 10 HET TLA A 504 10 HET SRT A 505 10 HET SRT A 507 10 HET TAR A 503 10 HETNAM ZN ZINC ION HETNAM R78 4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8- HETNAM 2 R78 TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1- HETNAM 3 R78 METHYLPIPERIDIN-4-YL)BENZAMIDE HETNAM TLA L(+)-TARTARIC ACID HETNAM SRT S,R MESO-TARTARIC ACID HETNAM TAR D(-)-TARTARIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 R78 C28 H39 N7 O3 FORMUL 4 TLA 2(C4 H6 O6) FORMUL 6 SRT 2(C4 H6 O6) FORMUL 8 TAR C4 H6 O6 FORMUL 9 HOH *285(H2 O) HELIX 1 1 SER A 87 LEU A 89 5 3 HELIX 2 2 LYS A 91 SER A 107 1 17 HELIX 3 3 SER A 137 LYS A 146 1 10 HELIX 4 4 THR A 149 ASN A 170 1 22 HELIX 5 5 LYS A 178 GLY A 180 5 3 HELIX 6 6 ALA A 219 SER A 224 1 6 HELIX 7 7 PHE A 230 GLY A 247 1 18 HELIX 8 8 CYS A 255 LYS A 265 1 11 HELIX 9 9 ASN A 275 LEU A 286 1 12 HELIX 10 10 ASP A 289 ARG A 293 5 5 HELIX 11 11 THR A 295 ASN A 301 5 7 HELIX 12 12 ASP A 302 SER A 307 1 6 HELIX 13 13 PRO A 315 THR A 320 5 6 SHEET 1 A 6 VAL A 43 ASP A 46 0 SHEET 2 A 6 ARG A 51 GLY A 62 -1 O TYR A 53 N LEU A 44 SHEET 3 A 6 ALA A 65 ASP A 72 -1 O GLU A 69 N GLY A 56 SHEET 4 A 6 VAL A 78 PRO A 85 -1 O GLY A 81 N PHE A 68 SHEET 5 A 6 PHE A 125 GLU A 131 -1 O LEU A 130 N ALA A 80 SHEET 6 A 6 PHE A 116 GLU A 121 -1 N GLY A 118 O VAL A 129 SHEET 1 B 2 VAL A 172 ILE A 173 0 SHEET 2 B 2 THR A 199 LYS A 200 -1 O THR A 199 N ILE A 173 SHEET 1 C 2 LEU A 182 LEU A 184 0 SHEET 2 C 2 VAL A 190 ILE A 192 -1 O LYS A 191 N PHE A 183 LINK NE2 HIS A 93 ZN ZN A 501 1555 1555 2.09 LINK SG CYS A 212 ZN ZN A 501 1555 1555 2.25 LINK ZN ZN A 501 O1 TLA A 502 1555 1555 2.01 SITE 1 AC1 4 HIS A 93 CYS A 212 CYS A 255 TLA A 502 SITE 1 AC2 15 ARG A 57 PHE A 58 LEU A 59 LYS A 61 SITE 2 AC2 15 GLU A 69 VAL A 114 LEU A 130 GLU A 131 SITE 3 AC2 15 LEU A 132 CYS A 133 ARG A 136 PHE A 183 SITE 4 AC2 15 HOH A 527 HOH A 563 HOH A 619 SITE 1 AC3 11 LYS A 91 HIS A 93 LYS A 97 CYS A 212 SITE 2 AC3 11 SER A 254 CYS A 255 LEU A 256 ZN A 501 SITE 3 AC3 11 TLA A 504 HOH A 608 HOH A 677 SITE 1 AC4 8 PHE A 64 LYS A 91 GLN A 94 LYS A 97 SITE 2 AC4 8 TLA A 502 HOH A 552 HOH A 608 HOH A 733 SITE 1 AC5 5 ASN A 266 TYR A 268 SER A 269 ILE A 270 SITE 2 AC5 5 GLN A 283 SITE 1 AC6 7 ARG A 135 GLU A 140 LEU A 141 LEU A 319 SITE 2 AC6 7 HOH A 592 HOH A 648 HOH A 698 SITE 1 AC7 7 LEU A 139 LYS A 178 LEU A 179 GLY A 180 SITE 2 AC7 7 ASN A 216 HOH A 743 HOH A 783 CRYST1 66.593 66.593 154.110 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015017 0.008670 0.000000 0.00000 SCALE2 0.000000 0.017340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006489 0.00000