PDB Short entry for 2RRB HEADER RNA BINDING PROTEIN 17-JUN-10 2RRB TITLE REFINEMENT OF RNA BINDING DOMAIN IN HUMAN TRA2 BETA PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDNA FLJ40872 FIS, CLONE TUTER2000283, HIGHLY SIMILAR TO COMPND 3 HOMO SAPIENS TRANSFORMER-2-BETA (SFRS10) GENE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: P040517-05 KEYWDS RRM DOMAIN, RBD, RNA BINDING PROTEIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,K.KUWASAKO,M.TAKAHASHI,T.SOMEYA,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.SUGANO,Y.MUTO,S.YOKOYAMA REVDAT 1 27-APR-11 2RRB 0 JRNL AUTH K.TSUDA,T.SOMEYA,K.KUWASAKO,M.TAKAHASHI,F.HE,S.UNZAI, JRNL AUTH 2 M.INOUE,T.HARADA,S.WATANABE,T.TERADA,N.KOBAYASHI,M.SHIROUZU, JRNL AUTH 3 T.KIGAWA,A.TANAKA,S.SUGANO,P.GUNTERT,S.YOKOYAMA,Y.MUTO JRNL TITL STRUCTURAL BASIS FOR THE DUAL RNA-RECOGNITION MODES OF HUMAN JRNL TITL 2 TRA2-BETA RRM. JRNL REF NUCLEIC ACIDS RES. V. 39 1538 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20926394 JRNL DOI 10.1093/NAR/GKQ854 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RRB COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB150192. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 HUMAN TRANSFORMER 2 BETA-1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.6, NMRPIPE 20060801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9843, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 2 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 7 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 11 ARG A 111 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 11 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 12 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 14 ARG A 132 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 14 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 15 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 17 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 18 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 18 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 18 ARG A 190 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 18 ARG A 198 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 19 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 20 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 182 -176.36 -68.08 REMARK 500 2 ARG A 111 -47.26 -156.27 REMARK 500 2 ALA A 112 -163.20 63.17 REMARK 500 3 GLN A 154 -50.17 -131.16 REMARK 500 3 ARG A 156 -4.63 65.55 REMARK 500 4 SER A 110 -160.10 -160.49 REMARK 500 4 ILE A 195 -35.05 71.74 REMARK 500 4 HIS A 200 9.45 -155.31 REMARK 500 5 SER A 110 -51.58 -145.28 REMARK 500 5 ASP A 115 64.97 -157.18 REMARK 500 5 MET A 182 -176.40 -69.03 REMARK 500 5 ARG A 198 149.57 71.35 REMARK 500 5 PRO A 199 -153.82 -79.64 REMARK 500 5 HIS A 200 33.80 -76.47 REMARK 500 6 LEU A 108 -21.83 -144.38 REMARK 500 6 ASN A 117 31.23 -158.08 REMARK 500 6 SER A 155 -6.73 -143.02 REMARK 500 7 MET A 182 -171.84 -67.69 REMARK 500 7 HIS A 200 22.67 -151.59 REMARK 500 8 LEU A 108 -29.84 70.23 REMARK 500 8 PRO A 116 98.65 -57.57 REMARK 500 8 ASN A 117 29.37 -160.42 REMARK 500 8 GLN A 154 -51.12 -120.69 REMARK 500 8 MET A 182 -173.87 -66.32 REMARK 500 9 SER A 110 12.83 59.84 REMARK 500 9 ARG A 111 -34.29 69.25 REMARK 500 9 GLN A 154 -40.33 -138.80 REMARK 500 10 SER A 110 18.40 -140.82 REMARK 500 10 ASN A 180 108.87 -55.50 REMARK 500 10 MET A 182 -173.08 -66.37 REMARK 500 12 GLN A 154 -32.71 -133.11 REMARK 500 12 MET A 182 -170.67 -65.92 REMARK 500 12 LYS A 197 37.75 -78.75 REMARK 500 13 ASN A 113 72.28 -157.48 REMARK 500 13 GLN A 154 -42.54 -137.97 REMARK 500 14 ALA A 112 45.81 -166.98 REMARK 500 14 ASN A 117 58.64 -156.43 REMARK 500 14 GLN A 154 -26.15 -148.47 REMARK 500 14 MET A 182 -169.54 -66.53 REMARK 500 15 ALA A 112 35.00 -147.81 REMARK 500 15 MET A 182 -172.90 -65.38 REMARK 500 15 HIS A 200 25.17 -148.89 REMARK 500 16 GLN A 154 -39.50 -139.08 REMARK 500 16 MET A 182 -171.84 -65.01 REMARK 500 17 PRO A 116 155.47 -49.51 REMARK 500 17 CYS A 118 -36.23 71.45 REMARK 500 17 MET A 182 -174.86 -65.05 REMARK 500 18 GLN A 154 -50.31 -129.05 REMARK 500 18 MET A 182 -178.63 -66.03 REMARK 500 18 SER A 194 -152.90 -152.16 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RRA RELATED DB: PDB DBREF 2RRB A 111 201 UNP Q8N1H4 Q8N1H4_HUMAN 75 165 SEQADV 2RRB GLY A 106 UNP Q8N1H4 EXPRESSION TAG SEQADV 2RRB PRO A 107 UNP Q8N1H4 EXPRESSION TAG SEQADV 2RRB LEU A 108 UNP Q8N1H4 EXPRESSION TAG SEQADV 2RRB GLY A 109 UNP Q8N1H4 EXPRESSION TAG SEQADV 2RRB SER A 110 UNP Q8N1H4 EXPRESSION TAG SEQRES 1 A 96 GLY PRO LEU GLY SER ARG ALA ASN PRO ASP PRO ASN CYS SEQRES 2 A 96 CYS LEU GLY VAL PHE GLY LEU SER LEU TYR THR THR GLU SEQRES 3 A 96 ARG ASP LEU ARG GLU VAL PHE SER LYS TYR GLY PRO ILE SEQRES 4 A 96 ALA ASP VAL SER ILE VAL TYR ASP GLN GLN SER ARG ARG SEQRES 5 A 96 SER ARG GLY PHE ALA PHE VAL TYR PHE GLU ASN VAL ASP SEQRES 6 A 96 ASP ALA LYS GLU ALA LYS GLU ARG ALA ASN GLY MET GLU SEQRES 7 A 96 LEU ASP GLY ARG ARG ILE ARG VAL ASP PHE SER ILE THR SEQRES 8 A 96 LYS ARG PRO HIS THR HELIX 1 1 THR A 130 SER A 139 1 10 HELIX 2 2 LYS A 140 GLY A 142 5 3 HELIX 3 3 ASN A 168 ASN A 180 1 13 SHEET 1 A 4 ILE A 144 TYR A 151 0 SHEET 2 A 4 SER A 158 PHE A 166 -1 O PHE A 161 N VAL A 150 SHEET 3 A 4 CYS A 119 PHE A 123 -1 N VAL A 122 O ALA A 162 SHEET 4 A 4 ARG A 190 SER A 194 -1 O ARG A 190 N PHE A 123 SHEET 1 B 2 GLU A 183 LEU A 184 0 SHEET 2 B 2 ARG A 187 ARG A 188 -1 O ARG A 187 N LEU A 184 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000