PDB Short entry for 2RSG HEADER LIPID TRANSPORT 25-FEB-12 2RSG TITLE SOLUTION STRUCTURE OF THE CERT PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGEN TYPE IV ALPHA-3-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-117; COMPND 5 SYNONYM: CERAMIDE TRANSFER PROTEIN, HCERT, GOODPASTURE ANTIGEN- COMPND 6 BINDING PROTEIN, GPBP, START DOMAIN-CONTAINING PROTEIN 11, STARD11, COMPND 7 STAR-RELATED LIPID TRANSFER PROTEIN 11; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COL4A3BP, CERT, STARD11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS PLECKSTRIN HOMOLOGY, LIPID TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUGIKI,K.TAKEUCHI,Y.TOKUNAGA,K.KUMAGAI,M.KAWANO,M.NISHIJIMA, AUTHOR 2 K.HANADA,H.TAKAHASHI,I.SHIMADA REVDAT 3 14-JUN-23 2RSG 1 REMARK REVDAT 2 16-OCT-13 2RSG 1 JRNL REVDAT 1 15-AUG-12 2RSG 0 JRNL AUTH T.SUGIKI,K.TAKEUCHI,T.YAMAJI,T.TAKANO,Y.TOKUNAGA,K.KUMAGAI, JRNL AUTH 2 K.HANADA,H.TAKAHASHI,I.SHIMADA JRNL TITL STRUCTURAL BASIS FOR THE GOLGI ASSOCIATION BY THE PLECKSTRIN JRNL TITL 2 HOMOLOGY DOMAIN OF THE CERAMIDE TRAFFICKING PROTEIN (CERT) JRNL REF J.BIOL.CHEM. V. 287 33706 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22869376 JRNL DOI 10.1074/JBC.M112.367730 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000150229. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.20 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-98% 15N] CERT-1, 10 MM REMARK 210 HEPES-2, 100 MM SODIUM CHLORIDE- REMARK 210 3, 5 MM DTT-4, 93% H2O/7% D2O; REMARK 210 0.2 MM [U-98% 13C; U-98% 15N] REMARK 210 CERT-5, 10 MM HEPES-6, 100 MM REMARK 210 SODIUM CHLORIDE-7, 5 MM DTT-8, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D 1H-15N NOESY; 4D 13C 15N REMARK 210 NOESY; 3D HCCH-TOCSY; 2D 1H-13C REMARK 210 HSQC; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 34 -63.80 -102.62 REMARK 500 1 ASN A 49 -68.20 71.90 REMARK 500 1 ASN A 50 22.05 174.35 REMARK 500 1 GLU A 60 -73.49 26.12 REMARK 500 1 CYS A 65 129.92 -171.75 REMARK 500 1 ASP A 80 -75.05 -71.44 REMARK 500 1 ASP A 101 -54.76 -177.59 REMARK 500 2 THR A 34 -79.95 -83.14 REMARK 500 2 LYS A 48 163.06 177.26 REMARK 500 2 GLU A 60 -46.94 49.76 REMARK 500 2 PRO A 102 54.30 -69.17 REMARK 500 2 HIS A 104 -73.24 -70.83 REMARK 500 2 ARG A 105 20.27 -170.30 REMARK 500 3 ASP A 59 49.71 -81.73 REMARK 500 3 ASN A 91 105.06 -50.25 REMARK 500 3 ASP A 92 -20.08 72.20 REMARK 500 3 ALA A 99 -174.53 -64.57 REMARK 500 3 ASP A 101 -57.05 176.02 REMARK 500 3 ASP A 103 -149.39 -157.28 REMARK 500 3 HIS A 104 62.20 71.58 REMARK 500 4 ASN A 35 -80.14 -152.46 REMARK 500 4 LYS A 56 -73.61 -58.74 REMARK 500 4 SER A 57 -85.58 -105.82 REMARK 500 4 GLU A 58 -28.59 -153.95 REMARK 500 4 GLU A 60 22.15 39.02 REMARK 500 4 CYS A 65 113.20 -175.34 REMARK 500 4 SER A 68 110.39 -164.63 REMARK 500 4 GLN A 100 -71.34 -64.31 REMARK 500 4 ASP A 101 -63.60 -148.30 REMARK 500 4 LYS A 116 166.99 -49.97 REMARK 500 5 GLU A 25 -70.59 -72.34 REMARK 500 5 THR A 34 -28.24 -169.75 REMARK 500 5 ASN A 49 -90.81 64.50 REMARK 500 5 ASN A 50 36.46 -162.01 REMARK 500 5 ASP A 59 42.10 -74.14 REMARK 500 5 ASP A 80 -56.82 73.28 REMARK 500 5 PRO A 102 94.32 -58.70 REMARK 500 5 ASP A 103 -163.58 -161.59 REMARK 500 5 ARG A 105 34.01 -90.24 REMARK 500 6 ASN A 35 -62.65 -140.77 REMARK 500 6 LYS A 48 161.79 179.74 REMARK 500 6 SER A 57 -168.58 -162.01 REMARK 500 6 ASP A 59 42.10 -81.64 REMARK 500 6 CYS A 65 116.94 -163.56 REMARK 500 6 HIS A 79 161.53 -44.44 REMARK 500 6 PHE A 81 -56.07 -152.13 REMARK 500 6 ASP A 101 -53.63 -166.38 REMARK 500 6 HIS A 104 29.36 -149.45 REMARK 500 7 LYS A 48 146.11 -173.27 REMARK 500 7 SER A 57 -164.60 -167.91 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11473 RELATED DB: BMRB DBREF 2RSG A 24 117 UNP Q9Y5P4 C43BP_HUMAN 24 117 SEQRES 1 A 94 VAL GLU ARG CYS GLY VAL LEU SER LYS TRP THR ASN TYR SEQRES 2 A 94 ILE HIS GLY TRP GLN ASP ARG TRP VAL VAL LEU LYS ASN SEQRES 3 A 94 ASN ALA LEU SER TYR TYR LYS SER GLU ASP GLU THR GLU SEQRES 4 A 94 TYR GLY CYS ARG GLY SER ILE CYS LEU SER LYS ALA VAL SEQRES 5 A 94 ILE THR PRO HIS ASP PHE ASP GLU CYS ARG PHE ASP ILE SEQRES 6 A 94 SER VAL ASN ASP SER VAL TRP TYR LEU ARG ALA GLN ASP SEQRES 7 A 94 PRO ASP HIS ARG GLN GLN TRP ILE ASP ALA ILE GLU GLN SEQRES 8 A 94 HIS LYS THR HELIX 1 1 ASP A 59 TYR A 63 5 5 HELIX 2 2 ARG A 105 LYS A 116 1 12 SHEET 1 A 4 ARG A 26 TRP A 33 0 SHEET 2 A 4 TRP A 40 LYS A 48 -1 O VAL A 45 N GLY A 28 SHEET 3 A 4 ALA A 51 TYR A 55 -1 O SER A 53 N VAL A 46 SHEET 4 A 4 GLY A 67 CYS A 70 -1 O GLY A 67 N TYR A 54 SHEET 1 B 3 VAL A 75 PRO A 78 0 SHEET 2 B 3 ARG A 85 VAL A 90 -1 O ASP A 87 N THR A 77 SHEET 3 B 3 SER A 93 ARG A 98 -1 O TRP A 95 N ILE A 88 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000