PDB Short entry for 2V1T HEADER OXIDOREDUCTASE 29-MAY-07 2V1T TITLE CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CYTOSOLIC DOMAIN, RESIDUES 59-126; COMPND 5 SYNONYM: MITOCHONDRIAL 20 KDA OUTER MEMBRANE PROTEIN, OUTER COMPND 6 MITOCHONDRIAL MEMBRANE RECEPTOR TOM20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ALDEHYDE DEHYDROGENASE; COMPND 10 CHAIN: C, D; COMPND 11 FRAGMENT: C-TERMINAL HALF OF THE PRESEQUENCE OF MITOCHONDRIAL COMPND 12 PRECURSOR, RESIDUES 12-24; COMPND 13 SYNONYM: ALDH CLASS 2, ALDH1, ALDH-E2; COMPND 14 EC: 1.2.1.3; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116 KEYWDS OUTER MEMBRANE, TRANSIT PEPTIDE, PHOSPHORYLATION, MITOCHONDRION, KEYWDS 2 TRANSMEMBRANE, OXIDOREDUCTASE, PROTEIN TRANSPORT, NAD, MEMBRANE, KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.OBITA,M.IGURA,T.OSE,T.ENDO,K.MAENAKA,D.KOHDA REVDAT 3 13-JUL-11 2V1T 1 VERSN REVDAT 2 24-FEB-09 2V1T 1 VERSN REVDAT 1 12-JUN-07 2V1T 0 SPRSDE 12-JUN-07 2V1T 1WT4 JRNL AUTH T.SAITOH,M.IGURA,T.OBITA,T.OSE,R.KOJIMA,K.MAENAKA,T.ENDO, JRNL AUTH 2 D.KOHDA JRNL TITL TOM20 RECOGNIZES MITOCHONDRIAL PRESEQUENCES THROUGH DYNAMIC JRNL TITL 2 EQUILIBRIUM AMONG MULTIPLE BOUND STATES. JRNL REF EMBO J. V. 26 4777 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17948058 JRNL DOI 10.1038/SJ.EMBOJ.7601888 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 8906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.000 REMARK 3 FREE R VALUE TEST SET COUNT : 879 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 639 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.242 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.134 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1298 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 878 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1749 ; 1.423 ; 2.029 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2171 ; 1.032 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 161 ; 5.080 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;37.479 ;26.786 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 231 ;17.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;17.881 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 206 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1416 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 214 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 338 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 931 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 647 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 629 ; 0.098 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 103 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.204 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 84 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1050 ; 1.121 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1323 ; 1.116 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 491 ; 2.124 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 426 ; 2.874 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4780 1.7490 24.7530 REMARK 3 T TENSOR REMARK 3 T11: -0.0017 T22: -0.0343 REMARK 3 T33: -0.0171 T12: -0.0129 REMARK 3 T13: -0.0003 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.8242 L22: 0.6178 REMARK 3 L33: 0.9727 L12: -0.1870 REMARK 3 L13: 0.4822 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0277 S13: -0.0274 REMARK 3 S21: -0.0163 S22: 0.0032 S23: -0.0168 REMARK 3 S31: 0.0742 S32: -0.0001 S33: -0.0073 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 59 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1230 11.6600 9.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: -0.0284 REMARK 3 T33: -0.0288 T12: -0.0117 REMARK 3 T13: -0.0051 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.7004 L22: 0.5355 REMARK 3 L33: 1.0081 L12: -0.0428 REMARK 3 L13: -0.4218 L23: 0.6402 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.0248 S13: 0.0467 REMARK 3 S21: -0.0177 S22: 0.0042 S23: 0.0004 REMARK 3 S31: -0.0913 S32: 0.0487 S33: -0.0375 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 24 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4560 -8.7590 26.1540 REMARK 3 T TENSOR REMARK 3 T11: 0.0387 T22: -0.0146 REMARK 3 T33: -0.0650 T12: -0.0286 REMARK 3 T13: 0.0292 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.6378 L22: 5.5363 REMARK 3 L33: 0.7108 L12: 0.1788 REMARK 3 L13: 0.0040 L23: 0.4014 REMARK 3 S TENSOR REMARK 3 S11: 0.1002 S12: -0.0602 S13: -0.0252 REMARK 3 S21: -0.1380 S22: -0.0053 S23: -0.2259 REMARK 3 S31: -0.2000 S32: -0.0231 S33: -0.0949 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 24 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5060 21.0310 8.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: -0.0051 REMARK 3 T33: -0.0888 T12: 0.0140 REMARK 3 T13: 0.0116 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.4819 L22: 3.8335 REMARK 3 L33: 3.9108 L12: -0.8765 REMARK 3 L13: 0.5862 L23: 3.0299 REMARK 3 S TENSOR REMARK 3 S11: -0.1393 S12: 0.0674 S13: 0.1795 REMARK 3 S21: 0.3982 S22: 0.2808 S23: 0.2471 REMARK 3 S31: 0.0834 S32: 0.3498 S33: -0.1415 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-07. REMARK 100 THE PDBE ID CODE IS EBI-32622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL40B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9838 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9958 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.7 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, AMMONIUM CHLORIDE, PH REMARK 280 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.81950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ALA 23 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN C, THR 24 TO CY3 REMARK 400 ENGINEERED RESIDUE IN CHAIN D, ALA 23 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN D, THR 24 TO CY3 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 54 REMARK 465 PRO B 55 REMARK 465 LEU B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO C 13 O HOH C 2005 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2059 O HOH A 2070 1546 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 14 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OM2 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE MITOCHONDRIAL REMARK 900 PROTEIN IMPORTRECEPTOR TOM20 FROM RAT IN A REMARK 900 COMPLEX WITH A PRESEQUENCEPEPTIDE DERIVED FROM REMARK 900 RAT ALDEHYDE DEHYDROGENASE (ALDH) REMARK 900 RELATED ID: 1WT4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT TOM20-ALDH REMARK 900 PRESEQUENCE COMPLEX REMARK 900 RELATED ID: 2CUV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DISULFIDE BOND TETHERED REMARK 900 TOM20-PRESEQUENCE COMPLEXES REMARK 999 REMARK 999 SEQUENCE REMARK 999 GLY A 54 CLONING ARTIFACT PRO A 55 CLONING ARTIFACT REMARK 999 LEU A 56 CLONING ARTIFACT GLY A 57 CLONING ARTIFACT REMARK 999 SER A 58 CLONING ARTIFACT MSE A MODIFIED RESIDUE REMARK 999 GLY B 54 CLONING ARTIFACT PRO B 55 CLONING ARTIFACT REMARK 999 LEU B 56 CLONING ARTIFACT GLY B 57 CLONING ARTIFACT REMARK 999 SER B 58 CLONING ARTIFACT MSE B MODIFIED RESIDUE REMARK 999 GLY 23 ENGINEERED DBREF 2V1T A 54 58 PDB 2V1T 2V1T 54 58 DBREF 2V1T A 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 2V1T B 54 58 PDB 2V1T 2V1T 54 58 DBREF 2V1T B 59 126 UNP Q62760 TOM20_RAT 59 126 DBREF 2V1T C 12 24 UNP P11884 ALDH2_RAT 12 24 DBREF 2V1T D 12 24 UNP P11884 ALDH2_RAT 12 24 SEQADV 2V1T GLY C 23 UNP P11884 ALA 23 ENGINEERED MUTATION SEQADV 2V1T CY3 C 24 UNP P11884 THR 24 ENGINEERED MUTATION SEQADV 2V1T GLY D 23 UNP P11884 ALA 23 ENGINEERED MUTATION SEQADV 2V1T CY3 D 24 UNP P11884 THR 24 ENGINEERED MUTATION SEQRES 1 A 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 A 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 A 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 A 73 LEU THR ASN ALA ILE ALA VAL CYS GLY GLN PRO GLN GLN SEQRES 5 A 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 A 73 PHE GLN MSE LEU LEU THR LYS LEU SEQRES 1 B 73 GLY PRO LEU GLY SER ASP LEU LYS ASP ALA GLU ALA VAL SEQRES 2 B 73 GLN LYS PHE PHE LEU GLU GLU ILE GLN LEU GLY GLU GLU SEQRES 3 B 73 LEU LEU ALA GLN GLY ASP TYR GLU LYS GLY VAL ASP HIS SEQRES 4 B 73 LEU THR ASN ALA ILE ALA VAL CYS GLY GLN PRO GLN GLN SEQRES 5 B 73 LEU LEU GLN VAL LEU GLN GLN THR LEU PRO PRO PRO VAL SEQRES 6 B 73 PHE GLN MSE LEU LEU THR LYS LEU SEQRES 1 C 13 GLY PRO ARG LEU SER ARG LEU LEU SER ALA ALA GLY CY3 SEQRES 1 D 13 GLY PRO ARG LEU SER ARG LEU LEU SER ALA ALA GLY CY3 MODRES 2V1T MSE A 121 MET SELENOMETHIONINE MODRES 2V1T MSE B 121 MET SELENOMETHIONINE MODRES 2V1T CY3 C 24 CYS MODIFIED CYSTEINE MODRES 2V1T CY3 D 24 CYS MODIFIED CYSTEINE HET MSE A 121 8 HET MSE B 121 8 HET CY3 C 24 7 HET CY3 D 24 7 HETNAM MSE SELENOMETHIONINE HETNAM CY3 2-AMINO-3-MERCAPTO-PROPIONAMIDE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 CY3 2(C3 H8 N2 O S) FORMUL 5 HOH *168(H2 O) HELIX 1 1 ASP A 59 GLY A 84 1 26 HELIX 2 2 ASP A 85 VAL A 99 1 15 HELIX 3 3 PRO A 103 LEU A 114 1 12 HELIX 4 4 PRO A 115 LEU A 126 1 12 HELIX 5 5 GLU B 64 GLN B 83 1 20 HELIX 6 6 ASP B 85 VAL B 99 1 15 HELIX 7 7 PRO B 103 LEU B 114 1 12 HELIX 8 8 PRO B 115 LYS B 125 1 11 HELIX 9 9 GLY C 12 ARG C 14 5 3 HELIX 10 10 LEU C 15 GLY C 23 1 9 HELIX 11 11 ARG D 14 GLY D 23 1 10 LINK C GLN A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N LEU A 122 1555 1555 1.33 LINK C GLN B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N LEU B 122 1555 1555 1.33 LINK C GLY C 23 N CY3 C 24 1555 1555 1.34 LINK SG CY3 C 24 SG CYS A 100 1555 1555 2.04 LINK C GLY D 23 N CY3 D 24 1555 1555 1.32 LINK SG CY3 D 24 SG CYS B 100 1555 1555 2.04 CRYST1 33.629 27.639 70.967 90.00 103.07 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029736 0.000000 0.006903 0.00000 SCALE2 0.000000 0.036181 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014466 0.00000 MTRIX1 1 0.843620 -0.211820 0.493390 -8.88722 1 MTRIX2 1 -0.168870 -0.976940 -0.130660 15.64339 1 MTRIX3 1 0.509690 0.026910 -0.859940 33.57258 1 MTRIX1 2 0.859380 0.005700 0.511310 -10.43461 1 MTRIX2 2 0.007780 -0.999970 -0.001920 12.34250 1 MTRIX3 2 0.511280 0.005630 -0.859400 34.20483 1