PDB Short entry for 2V32 HEADER OXIDOREDUCTASE 11-JUN-07 2V32 TITLE CRYSTAL STRUCTURE OF THE C45S MUTANT OF THE PEROXIREDOXIN 6 OF TITLE 2 ARENICOLA MARINA. MONOCLINIC FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN 6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEROXIREDOXIN 6 OF ARENICOLA MARINA; COMPND 5 EC: 1.11.1.15; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARENICOLA MARINA; SOURCE 3 ORGANISM_COMMON: LUGWORM; SOURCE 4 ORGANISM_TAXID: 6344; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE-60 KEYWDS OXIDOREDUCTASE, PEROXIREDOXINS, ANTIOXIDANT ENZYMES, ARENICOLA MARINA EXPDTA X-RAY DIFFRACTION AUTHOR A.SMEETS,J.P.DECLERCQ REVDAT 4 13-DEC-23 2V32 1 REMARK REVDAT 3 24-JUL-19 2V32 1 REMARK REVDAT 2 24-FEB-09 2V32 1 VERSN REVDAT 1 08-APR-08 2V32 0 JRNL AUTH A.SMEETS,E.LOUMAYE,A.CLIPPE,J.F.REES,B.KNOOPS,J.P.DECLERCQ JRNL TITL THE CRYSTAL STRUCTURE OF THE C45S MUTANT OF ANNELID JRNL TITL 2 ARENICOLA MARINA PEROXIREDOXIN 6 SUPPORTS ITS ASSIGNMENT TO JRNL TITL 3 THE MECHANISTICALLY TYPICAL 2-CYS SUBFAMILY WITHOUT ANY JRNL TITL 4 FORMATION OF TOROID-SHAPED DECAMERS. JRNL REF PROTEIN SCI. V. 17 700 2008 JRNL REFN ISSN 0961-8368 JRNL PMID 18359859 JRNL DOI 10.1110/PS.073399308 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 62040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3307 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.5300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 804 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.142 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.229 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6983 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9465 ; 1.864 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 6.573 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 272 ;35.305 ;24.118 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1218 ;16.242 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.383 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1061 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5212 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3419 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4785 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 600 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.243 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.223 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4528 ; 1.128 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7112 ; 1.698 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2833 ; 2.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2353 ; 4.141 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2V32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1290032862. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8423 REMARK 200 MONOCHROMATOR : SI 111, HORIZONTALLY FOCUSSING REMARK 200 OPTICS : MIRROR 1, FLAT PRE-MIRROR, REMARK 200 MIRROR 2, BENT, VERTICALLY REMARK 200 FOCUSSING REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V2G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR : BIS-TRIS 0.1M PH 5.5, REMARK 280 PEG3350 25%(M/V), DTT 0.001M, AMMONIUM SULFATE 0.1M DROP 1UL REMARK 280 PROTEIN AND 1 UL RESERVOIR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.13050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.51700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.13050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 41.51700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2140 LIES ON A SPECIAL POSITION. REMARK 375 HOH C2109 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 45 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 45 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN C, CYS 45 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN D, CYS 45 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 222 REMARK 465 GLY A 223 REMARK 465 GLY A 224 REMARK 465 SER A 225 REMARK 465 ARG A 226 REMARK 465 SER A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 MET B 1 REMARK 465 LYS B 220 REMARK 465 SER B 221 REMARK 465 MET B 222 REMARK 465 GLY B 223 REMARK 465 GLY B 224 REMARK 465 SER B 225 REMARK 465 ARG B 226 REMARK 465 SER B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 MET C 1 REMARK 465 MET C 222 REMARK 465 GLY C 223 REMARK 465 GLY C 224 REMARK 465 SER C 225 REMARK 465 ARG C 226 REMARK 465 SER C 227 REMARK 465 HIS C 228 REMARK 465 HIS C 229 REMARK 465 HIS C 230 REMARK 465 HIS C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 MET D 1 REMARK 465 SER D 221 REMARK 465 MET D 222 REMARK 465 GLY D 223 REMARK 465 GLY D 224 REMARK 465 SER D 225 REMARK 465 ARG D 226 REMARK 465 SER D 227 REMARK 465 HIS D 228 REMARK 465 HIS D 229 REMARK 465 HIS D 230 REMARK 465 HIS D 231 REMARK 465 HIS D 232 REMARK 465 HIS D 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 15 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 57.34 -96.28 REMARK 500 CYS A 127 -157.67 -94.77 REMARK 500 LYS A 170 52.10 -96.87 REMARK 500 THR B 121 1.36 -67.17 REMARK 500 CYS B 127 -158.21 -88.15 REMARK 500 ASP B 176 12.43 59.92 REMARK 500 ASP C 101 58.37 -104.10 REMARK 500 CYS C 127 -158.58 -93.35 REMARK 500 LEU C 141 144.31 -170.73 REMARK 500 LYS C 170 47.92 -80.03 REMARK 500 ASP D 101 57.25 -105.04 REMARK 500 PRO D 179 128.64 -38.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2007 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH D2025 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH D2029 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH D2038 DISTANCE = 5.93 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ D1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ B1220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ A1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEZ C1222 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V2G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C45S MUTANT OF THE PEROXIREDOXIN 6 OF REMARK 900 ARENICOLA MARINA. MONOCLINIC FORM DBREF 2V32 A 1 220 UNP Q1AN22 Q1AN22_AREMA 1 220 DBREF 2V32 A 221 233 PDB 2V32 2V32 221 233 DBREF 2V32 B 1 220 UNP Q1AN22 Q1AN22_AREMA 1 220 DBREF 2V32 B 221 233 PDB 2V32 2V32 221 233 DBREF 2V32 C 1 220 UNP Q1AN22 Q1AN22_AREMA 1 220 DBREF 2V32 C 221 233 PDB 2V32 2V32 221 233 DBREF 2V32 D 1 220 UNP Q1AN22 Q1AN22_AREMA 1 220 DBREF 2V32 D 221 233 PDB 2V32 2V32 221 233 SEQADV 2V32 SER A 45 UNP Q1AN22 CYS 45 ENGINEERED MUTATION SEQADV 2V32 SER B 45 UNP Q1AN22 CYS 45 ENGINEERED MUTATION SEQADV 2V32 SER C 45 UNP Q1AN22 CYS 45 ENGINEERED MUTATION SEQADV 2V32 SER D 45 UNP Q1AN22 CYS 45 ENGINEERED MUTATION SEQRES 1 A 233 MET GLY ILE THR LEU GLY GLU VAL PHE PRO ASN PHE GLU SEQRES 2 A 233 ALA ASP SER THR ILE GLY LYS LEU LYS PHE HIS ASP TRP SEQRES 3 A 233 LEU GLY ASN SER TRP GLY VAL LEU PHE SER HIS PRO ARG SEQRES 4 A 233 ASP PHE THR PRO VAL SER THR THR GLU LEU GLY ARG VAL SEQRES 5 A 233 ILE GLN LEU GLU GLY ASP PHE LYS LYS ARG GLY VAL LYS SEQRES 6 A 233 LEU ILE ALA LEU SER CYS ASP ASN VAL ALA ASP HIS LYS SEQRES 7 A 233 GLU TRP SER GLU ASP VAL LYS CYS LEU SER GLY VAL LYS SEQRES 8 A 233 GLY ASP MET PRO TYR PRO ILE ILE ALA ASP GLU THR ARG SEQRES 9 A 233 GLU LEU ALA VAL LYS LEU GLY MET VAL ASP PRO ASP GLU SEQRES 10 A 233 ARG THR SER THR GLY MET PRO LEU THR CYS ARG ALA VAL SEQRES 11 A 233 PHE ILE ILE GLY PRO ASP LYS LYS LEU LYS LEU SER ILE SEQRES 12 A 233 LEU TYR PRO ALA THR THR GLY ARG ASN PHE SER GLU ILE SEQRES 13 A 233 LEU ARG VAL ILE ASP SER LEU GLN LEU THR ALA GLN LYS SEQRES 14 A 233 LYS VAL ALA THR PRO ALA ASP TRP GLN PRO GLY ASP ARG SEQRES 15 A 233 CYS MET VAL VAL PRO GLY VAL SER ALA GLU GLU ALA LYS SEQRES 16 A 233 THR LEU PHE PRO ASN MET GLU VAL LYS ALA VAL PRO SER SEQRES 17 A 233 GLY LYS GLY TYR LEU ARG TYR THR PRO GLN PRO LYS SER SEQRES 18 A 233 MET GLY GLY SER ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 233 MET GLY ILE THR LEU GLY GLU VAL PHE PRO ASN PHE GLU SEQRES 2 B 233 ALA ASP SER THR ILE GLY LYS LEU LYS PHE HIS ASP TRP SEQRES 3 B 233 LEU GLY ASN SER TRP GLY VAL LEU PHE SER HIS PRO ARG SEQRES 4 B 233 ASP PHE THR PRO VAL SER THR THR GLU LEU GLY ARG VAL SEQRES 5 B 233 ILE GLN LEU GLU GLY ASP PHE LYS LYS ARG GLY VAL LYS SEQRES 6 B 233 LEU ILE ALA LEU SER CYS ASP ASN VAL ALA ASP HIS LYS SEQRES 7 B 233 GLU TRP SER GLU ASP VAL LYS CYS LEU SER GLY VAL LYS SEQRES 8 B 233 GLY ASP MET PRO TYR PRO ILE ILE ALA ASP GLU THR ARG SEQRES 9 B 233 GLU LEU ALA VAL LYS LEU GLY MET VAL ASP PRO ASP GLU SEQRES 10 B 233 ARG THR SER THR GLY MET PRO LEU THR CYS ARG ALA VAL SEQRES 11 B 233 PHE ILE ILE GLY PRO ASP LYS LYS LEU LYS LEU SER ILE SEQRES 12 B 233 LEU TYR PRO ALA THR THR GLY ARG ASN PHE SER GLU ILE SEQRES 13 B 233 LEU ARG VAL ILE ASP SER LEU GLN LEU THR ALA GLN LYS SEQRES 14 B 233 LYS VAL ALA THR PRO ALA ASP TRP GLN PRO GLY ASP ARG SEQRES 15 B 233 CYS MET VAL VAL PRO GLY VAL SER ALA GLU GLU ALA LYS SEQRES 16 B 233 THR LEU PHE PRO ASN MET GLU VAL LYS ALA VAL PRO SER SEQRES 17 B 233 GLY LYS GLY TYR LEU ARG TYR THR PRO GLN PRO LYS SER SEQRES 18 B 233 MET GLY GLY SER ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 233 MET GLY ILE THR LEU GLY GLU VAL PHE PRO ASN PHE GLU SEQRES 2 C 233 ALA ASP SER THR ILE GLY LYS LEU LYS PHE HIS ASP TRP SEQRES 3 C 233 LEU GLY ASN SER TRP GLY VAL LEU PHE SER HIS PRO ARG SEQRES 4 C 233 ASP PHE THR PRO VAL SER THR THR GLU LEU GLY ARG VAL SEQRES 5 C 233 ILE GLN LEU GLU GLY ASP PHE LYS LYS ARG GLY VAL LYS SEQRES 6 C 233 LEU ILE ALA LEU SER CYS ASP ASN VAL ALA ASP HIS LYS SEQRES 7 C 233 GLU TRP SER GLU ASP VAL LYS CYS LEU SER GLY VAL LYS SEQRES 8 C 233 GLY ASP MET PRO TYR PRO ILE ILE ALA ASP GLU THR ARG SEQRES 9 C 233 GLU LEU ALA VAL LYS LEU GLY MET VAL ASP PRO ASP GLU SEQRES 10 C 233 ARG THR SER THR GLY MET PRO LEU THR CYS ARG ALA VAL SEQRES 11 C 233 PHE ILE ILE GLY PRO ASP LYS LYS LEU LYS LEU SER ILE SEQRES 12 C 233 LEU TYR PRO ALA THR THR GLY ARG ASN PHE SER GLU ILE SEQRES 13 C 233 LEU ARG VAL ILE ASP SER LEU GLN LEU THR ALA GLN LYS SEQRES 14 C 233 LYS VAL ALA THR PRO ALA ASP TRP GLN PRO GLY ASP ARG SEQRES 15 C 233 CYS MET VAL VAL PRO GLY VAL SER ALA GLU GLU ALA LYS SEQRES 16 C 233 THR LEU PHE PRO ASN MET GLU VAL LYS ALA VAL PRO SER SEQRES 17 C 233 GLY LYS GLY TYR LEU ARG TYR THR PRO GLN PRO LYS SER SEQRES 18 C 233 MET GLY GLY SER ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 233 MET GLY ILE THR LEU GLY GLU VAL PHE PRO ASN PHE GLU SEQRES 2 D 233 ALA ASP SER THR ILE GLY LYS LEU LYS PHE HIS ASP TRP SEQRES 3 D 233 LEU GLY ASN SER TRP GLY VAL LEU PHE SER HIS PRO ARG SEQRES 4 D 233 ASP PHE THR PRO VAL SER THR THR GLU LEU GLY ARG VAL SEQRES 5 D 233 ILE GLN LEU GLU GLY ASP PHE LYS LYS ARG GLY VAL LYS SEQRES 6 D 233 LEU ILE ALA LEU SER CYS ASP ASN VAL ALA ASP HIS LYS SEQRES 7 D 233 GLU TRP SER GLU ASP VAL LYS CYS LEU SER GLY VAL LYS SEQRES 8 D 233 GLY ASP MET PRO TYR PRO ILE ILE ALA ASP GLU THR ARG SEQRES 9 D 233 GLU LEU ALA VAL LYS LEU GLY MET VAL ASP PRO ASP GLU SEQRES 10 D 233 ARG THR SER THR GLY MET PRO LEU THR CYS ARG ALA VAL SEQRES 11 D 233 PHE ILE ILE GLY PRO ASP LYS LYS LEU LYS LEU SER ILE SEQRES 12 D 233 LEU TYR PRO ALA THR THR GLY ARG ASN PHE SER GLU ILE SEQRES 13 D 233 LEU ARG VAL ILE ASP SER LEU GLN LEU THR ALA GLN LYS SEQRES 14 D 233 LYS VAL ALA THR PRO ALA ASP TRP GLN PRO GLY ASP ARG SEQRES 15 D 233 CYS MET VAL VAL PRO GLY VAL SER ALA GLU GLU ALA LYS SEQRES 16 D 233 THR LEU PHE PRO ASN MET GLU VAL LYS ALA VAL PRO SER SEQRES 17 D 233 GLY LYS GLY TYR LEU ARG TYR THR PRO GLN PRO LYS SER SEQRES 18 D 233 MET GLY GLY SER ARG SER HIS HIS HIS HIS HIS HIS HET BEZ A1222 9 HET BEZ B1220 9 HET BEZ C1222 9 HET BEZ D1221 9 HETNAM BEZ BENZOIC ACID FORMUL 5 BEZ 4(C7 H6 O2) FORMUL 9 HOH *804(H2 O) HELIX 1 1 PHE A 23 GLY A 28 1 6 HELIX 2 2 THR A 42 ARG A 62 1 21 HELIX 3 3 ASN A 73 GLY A 89 1 17 HELIX 4 4 ARG A 104 LEU A 110 1 7 HELIX 5 5 ASN A 152 LYS A 169 1 18 HELIX 6 6 SER A 190 PHE A 198 1 9 HELIX 7 7 PHE B 23 GLY B 28 1 6 HELIX 8 8 THR B 42 LYS B 61 1 20 HELIX 9 9 ASN B 73 GLY B 89 1 17 HELIX 10 10 ARG B 104 LEU B 110 1 7 HELIX 11 11 ASN B 152 LYS B 169 1 18 HELIX 12 12 SER B 190 PHE B 198 1 9 HELIX 13 13 PHE C 23 GLY C 28 1 6 HELIX 14 14 THR C 42 ARG C 62 1 21 HELIX 15 15 ASN C 73 GLY C 89 1 17 HELIX 16 16 ARG C 104 LEU C 110 1 7 HELIX 17 17 ASN C 152 ALA C 167 1 16 HELIX 18 18 SER C 190 PHE C 198 1 9 HELIX 19 19 PHE D 23 GLY D 28 1 6 HELIX 20 20 THR D 42 ARG D 62 1 21 HELIX 21 21 ASN D 73 GLY D 89 1 17 HELIX 22 22 ARG D 104 LEU D 110 1 7 HELIX 23 23 ASN D 152 ALA D 167 1 16 HELIX 24 24 SER D 190 PHE D 198 1 9 SHEET 1 AA 2 GLU A 13 ALA A 14 0 SHEET 2 AA 2 LEU A 21 LYS A 22 -1 O LEU A 21 N ALA A 14 SHEET 1 AB10 ILE A 98 ALA A 100 0 SHEET 2 AB10 VAL A 64 SER A 70 1 O ALA A 68 N ILE A 99 SHEET 3 AB10 TRP A 31 SER A 36 1 O TRP A 31 N LYS A 65 SHEET 4 AB10 ARG A 128 ILE A 133 -1 O ALA A 129 N SER A 36 SHEET 5 AB10 LEU A 139 TYR A 145 -1 N LYS A 140 O ILE A 132 SHEET 6 AB10 LEU B 139 TYR B 145 -1 O SER B 142 N LEU A 144 SHEET 7 AB10 ARG B 128 ILE B 133 -1 O ARG B 128 N TYR B 145 SHEET 8 AB10 TRP B 31 SER B 36 -1 O GLY B 32 N ILE B 133 SHEET 9 AB10 VAL B 64 SER B 70 1 O LYS B 65 N VAL B 33 SHEET 10 AB10 ILE B 98 ALA B 100 1 O ILE B 99 N SER B 70 SHEET 1 AC 2 VAL A 113 ARG A 118 0 SHEET 2 AC 2 PRO A 124 THR A 126 -1 O LEU A 125 N ASP A 114 SHEET 1 AD 4 VAL A 171 ALA A 172 0 SHEET 2 AD 4 CYS A 183 VAL A 185 -1 O MET A 184 N ALA A 172 SHEET 3 AD 4 ARG A 214 THR A 216 -1 O ARG A 214 N VAL A 185 SHEET 4 AD 4 GLU A 202 VAL A 203 -1 O GLU A 202 N TYR A 215 SHEET 1 BA 2 GLU B 13 ALA B 14 0 SHEET 2 BA 2 LEU B 21 LYS B 22 -1 O LEU B 21 N ALA B 14 SHEET 1 BB 2 VAL B 113 ARG B 118 0 SHEET 2 BB 2 PRO B 124 THR B 126 -1 O LEU B 125 N ASP B 114 SHEET 1 BC 4 VAL B 171 ALA B 172 0 SHEET 2 BC 4 CYS B 183 VAL B 185 -1 O MET B 184 N ALA B 172 SHEET 3 BC 4 ARG B 214 THR B 216 -1 O ARG B 214 N VAL B 185 SHEET 4 BC 4 GLU B 202 VAL B 203 -1 O GLU B 202 N TYR B 215 SHEET 1 CA14 LEU C 21 LYS C 22 0 SHEET 2 CA14 GLU C 13 SER C 16 -1 O ALA C 14 N LEU C 21 SHEET 3 CA14 ILE C 98 ALA C 100 -1 O ALA C 100 N ASP C 15 SHEET 4 CA14 VAL C 64 SER C 70 1 O ALA C 68 N ILE C 99 SHEET 5 CA14 TRP C 31 SER C 36 1 O TRP C 31 N LYS C 65 SHEET 6 CA14 ARG C 128 ILE C 133 -1 O ALA C 129 N SER C 36 SHEET 7 CA14 LEU C 139 TYR C 145 -1 N LYS C 140 O ILE C 132 SHEET 8 CA14 LEU D 139 TYR D 145 -1 O SER D 142 N LEU C 144 SHEET 9 CA14 ARG D 128 ILE D 133 -1 O ARG D 128 N TYR D 145 SHEET 10 CA14 TRP D 31 SER D 36 -1 O GLY D 32 N ILE D 133 SHEET 11 CA14 VAL D 64 SER D 70 1 O LYS D 65 N VAL D 33 SHEET 12 CA14 ILE D 98 ALA D 100 1 O ILE D 99 N SER D 70 SHEET 13 CA14 GLU D 13 SER D 16 -1 O ASP D 15 N ALA D 100 SHEET 14 CA14 LEU D 21 LYS D 22 -1 O LEU D 21 N ALA D 14 SHEET 1 CB 2 VAL C 113 ARG C 118 0 SHEET 2 CB 2 PRO C 124 THR C 126 -1 O LEU C 125 N ASP C 114 SHEET 1 CC 4 VAL C 171 ALA C 172 0 SHEET 2 CC 4 CYS C 183 VAL C 185 -1 O MET C 184 N ALA C 172 SHEET 3 CC 4 ARG C 214 THR C 216 -1 O ARG C 214 N VAL C 185 SHEET 4 CC 4 GLU C 202 VAL C 203 -1 O GLU C 202 N TYR C 215 SHEET 1 DA 2 VAL D 113 ARG D 118 0 SHEET 2 DA 2 PRO D 124 THR D 126 -1 O LEU D 125 N ASP D 114 SHEET 1 DB 4 VAL D 171 ALA D 172 0 SHEET 2 DB 4 CYS D 183 VAL D 185 -1 O MET D 184 N ALA D 172 SHEET 3 DB 4 ARG D 214 THR D 216 -1 O ARG D 214 N VAL D 185 SHEET 4 DB 4 GLU D 202 VAL D 203 -1 O GLU D 202 N TYR D 215 SITE 1 AC1 6 THR D 42 PRO D 43 VAL D 44 SER D 45 SITE 2 AC1 6 GLU D 117 ARG D 128 SITE 1 AC2 6 THR B 42 PRO B 43 VAL B 44 SER B 45 SITE 2 AC2 6 GLU B 117 ARG B 128 SITE 1 AC3 6 THR A 42 PRO A 43 VAL A 44 SER A 45 SITE 2 AC3 6 GLU A 117 ARG A 128 SITE 1 AC4 7 PRO C 38 THR C 42 PRO C 43 VAL C 44 SITE 2 AC4 7 SER C 45 GLU C 117 ARG C 128 CRYST1 128.261 83.034 107.444 90.00 116.72 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007797 0.000000 0.003925 0.00000 SCALE2 0.000000 0.012043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010420 0.00000 MTRIX1 1 -0.390090 0.920230 0.031840 -48.12045 1 MTRIX2 1 0.920220 0.388420 0.048150 33.51918 1 MTRIX3 1 0.031940 0.048080 -0.998330 -47.85597 1 MTRIX1 2 -0.999880 0.004760 0.014850 -30.85333 1 MTRIX2 2 -0.004740 -0.999990 0.001150 45.09361 1 MTRIX3 2 0.014850 0.001080 0.999890 0.36908 1 MTRIX1 3 0.394130 -0.917560 -0.052340 16.52116 1 MTRIX2 3 -0.918530 -0.391340 -0.056210 11.52739 1 MTRIX3 3 0.031100 0.070230 -0.997050 -48.36038 1