PDB Short entry for 2V76 HEADER PROTEIN-BINDING 26-JUL-07 2V76 TITLE CRYSTAL STRUCTURE OF THE HUMAN DOK1 PTB DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOCKING PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PTB DOMAIN, RESIDUES 152-256; COMPND 5 SYNONYM: DOWNSTREAM OF TYROSINE KINASE 1, P62, DOK, PP62, COMPND 6 HUMAN DOK1 PTB; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ALTERNATIVE SPLICING, PROTEIN-BINDING, PTB DOMAIN, KEYWDS 2 PHOSPHORYLATION, ADAPTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.OXLEY,N.J.ANTHIS,E.D.LOWE,I.D.CAMPBELL,K.L.WEGENER REVDAT 4 24-FEB-09 2V76 1 VERSN REVDAT 3 04-MAR-08 2V76 1 JRNL REVDAT 2 15-JAN-08 2V76 1 REMARK ATOM ANISOU TER REVDAT 2 2 HETATM CONECT MASTER REVDAT 1 08-JAN-08 2V76 0 JRNL AUTH C.L.OXLEY,N.J.ANTHIS,E.D.LOWE,I.VAKONAKIS, JRNL AUTH 2 I.D.CAMPBELL,K.L.WEGENER JRNL TITL AN INTEGRIN PHOSPHORYLATION SWITCH: THE EFFECT OF JRNL TITL 2 {BETA}3 INTEGRIN TAIL PHOSPHORYLATION ON DOK1 AND JRNL TITL 3 TALIN BINDING. JRNL REF J.BIOL.CHEM. V. 283 5420 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18156175 JRNL DOI 10.1074/JBC.M709435200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3247 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3391 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4585 ; 1.557 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 412 ; 6.292 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;31.448 ;21.916 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;13.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;17.996 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2579 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1545 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2308 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 281 ; 0.254 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 125 ; 0.454 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.289 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2057 ; 1.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3243 ; 2.341 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1496 ; 3.386 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1333 ; 4.944 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V76 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-07. REMARK 100 THE PDBE ID CODE IS EBI-33276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.93300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59364 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 25.98 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.5 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.6 REMARK 200 R MERGE FOR SHELL (I) : 0.38 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 1P5T REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMONIUM SULFATE, 2% PEG 400, REMARK 280 0.1M NA HEPES PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.08400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.08400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 42 REMARK 465 GLN A 43 REMARK 465 SER A 44 REMARK 465 GLN A 45 REMARK 465 LYS A 105 REMARK 465 ALA A 106 REMARK 465 GLN A 107 REMARK 465 GLY A 108 REMARK 465 PRO B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 GLN B 107 REMARK 465 GLY B 108 REMARK 465 PRO C 2 REMARK 465 LEU C 3 REMARK 465 GLY C 4 REMARK 465 GLN C 107 REMARK 465 GLY C 108 REMARK 465 PRO D 2 REMARK 465 LEU D 3 REMARK 465 GLY D 4 REMARK 465 GLN D 104 REMARK 465 LYS D 105 REMARK 465 ALA D 106 REMARK 465 GLN D 107 REMARK 465 GLY D 108 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C3 PGE B 1108 - O HOH B 2104 1.43 REMARK 500 C4 PGE B 1108 - O HOH B 2104 2.06 REMARK 500 C6 PGE B 1108 - O HOH B 2103 1.23 REMARK 500 C5 PGE B 1108 - O HOH B 2103 1.90 REMARK 500 O3 PGE D 1104 - O HOH D 2086 1.53 REMARK 500 O HOH A 2004 - O HOH A 2007 2.07 REMARK 500 O HOH B 2012 - O HOH B 2015 2.06 REMARK 500 O HOH B 2013 - O HOH B 2017 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG A 63 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 87 146.76 -172.91 REMARK 500 ALA B 42 -70.90 -67.04 REMARK 500 THR B 87 141.00 -173.19 REMARK 500 THR C 87 142.65 -173.11 REMARK 500 THR D 87 142.94 -173.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE D1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE B1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1107 DBREF 2V76 A 2 3 PDB 2V76 2V76 2 3 DBREF 2V76 A 4 108 UNP Q53TY2 DOK1_HUMAN 152 256 DBREF 2V76 B 2 3 PDB 2V76 2V76 2 3 DBREF 2V76 B 4 108 UNP Q53TY2 DOK1_HUMAN 152 256 DBREF 2V76 C 2 3 PDB 2V76 2V76 2 3 DBREF 2V76 C 4 108 UNP Q53TY2 DOK1_HUMAN 152 256 DBREF 2V76 D 2 3 PDB 2V76 2V76 2 3 DBREF 2V76 D 4 108 UNP Q53TY2 DOK1_HUMAN 152 256 SEQRES 1 A 107 PRO LEU GLY SER GLN PHE TRP VAL THR VAL GLN ARG THR SEQRES 2 A 107 GLU ALA ALA GLU ARG CYS GLY LEU HIS GLY SER TYR VAL SEQRES 3 A 107 LEU ARG VAL GLU ALA GLU ARG LEU THR LEU LEU THR VAL SEQRES 4 A 107 GLY ALA GLN SER GLN ILE LEU GLU PRO LEU LEU SER TRP SEQRES 5 A 107 PRO TYR THR LEU LEU ARG ARG TYR GLY ARG ASP LYS VAL SEQRES 6 A 107 MET PHE SER PHE GLU ALA GLY ARG ARG CYS PRO SER GLY SEQRES 7 A 107 PRO GLY THR PHE THR PHE GLN THR ALA GLN GLY ASN ASP SEQRES 8 A 107 ILE PHE GLN ALA VAL GLU THR ALA ILE HIS ARG GLN LYS SEQRES 9 A 107 ALA GLN GLY SEQRES 1 B 107 PRO LEU GLY SER GLN PHE TRP VAL THR VAL GLN ARG THR SEQRES 2 B 107 GLU ALA ALA GLU ARG CYS GLY LEU HIS GLY SER TYR VAL SEQRES 3 B 107 LEU ARG VAL GLU ALA GLU ARG LEU THR LEU LEU THR VAL SEQRES 4 B 107 GLY ALA GLN SER GLN ILE LEU GLU PRO LEU LEU SER TRP SEQRES 5 B 107 PRO TYR THR LEU LEU ARG ARG TYR GLY ARG ASP LYS VAL SEQRES 6 B 107 MET PHE SER PHE GLU ALA GLY ARG ARG CYS PRO SER GLY SEQRES 7 B 107 PRO GLY THR PHE THR PHE GLN THR ALA GLN GLY ASN ASP SEQRES 8 B 107 ILE PHE GLN ALA VAL GLU THR ALA ILE HIS ARG GLN LYS SEQRES 9 B 107 ALA GLN GLY SEQRES 1 C 107 PRO LEU GLY SER GLN PHE TRP VAL THR VAL GLN ARG THR SEQRES 2 C 107 GLU ALA ALA GLU ARG CYS GLY LEU HIS GLY SER TYR VAL SEQRES 3 C 107 LEU ARG VAL GLU ALA GLU ARG LEU THR LEU LEU THR VAL SEQRES 4 C 107 GLY ALA GLN SER GLN ILE LEU GLU PRO LEU LEU SER TRP SEQRES 5 C 107 PRO TYR THR LEU LEU ARG ARG TYR GLY ARG ASP LYS VAL SEQRES 6 C 107 MET PHE SER PHE GLU ALA GLY ARG ARG CYS PRO SER GLY SEQRES 7 C 107 PRO GLY THR PHE THR PHE GLN THR ALA GLN GLY ASN ASP SEQRES 8 C 107 ILE PHE GLN ALA VAL GLU THR ALA ILE HIS ARG GLN LYS SEQRES 9 C 107 ALA GLN GLY SEQRES 1 D 107 PRO LEU GLY SER GLN PHE TRP VAL THR VAL GLN ARG THR SEQRES 2 D 107 GLU ALA ALA GLU ARG CYS GLY LEU HIS GLY SER TYR VAL SEQRES 3 D 107 LEU ARG VAL GLU ALA GLU ARG LEU THR LEU LEU THR VAL SEQRES 4 D 107 GLY ALA GLN SER GLN ILE LEU GLU PRO LEU LEU SER TRP SEQRES 5 D 107 PRO TYR THR LEU LEU ARG ARG TYR GLY ARG ASP LYS VAL SEQRES 6 D 107 MET PHE SER PHE GLU ALA GLY ARG ARG CYS PRO SER GLY SEQRES 7 D 107 PRO GLY THR PHE THR PHE GLN THR ALA GLN GLY ASN ASP SEQRES 8 D 107 ILE PHE GLN ALA VAL GLU THR ALA ILE HIS ARG GLN LYS SEQRES 9 D 107 ALA GLN GLY HET PGE B1107 10 HET PGE D1104 10 HET PGE B1108 10 HET PGE A1105 10 HET SO4 D1105 5 HET SO4 B1109 5 HET SO4 A1106 5 HET SO4 C1107 5 HET GOL C1108 6 HET EDO A1107 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO C2 H6 O2 FORMUL 6 SO4 4(O4 S 2-) FORMUL 7 PGE 4(C6 H14 O4) FORMUL 8 GOL C3 H8 O3 FORMUL 9 HOH *387(H2 O1) HELIX 1 1 THR A 14 CYS A 20 1 7 HELIX 2 2 GLN A 89 GLN A 104 1 16 HELIX 3 3 THR B 14 CYS B 20 1 7 HELIX 4 4 GLN B 89 ALA B 106 1 18 HELIX 5 5 THR C 14 CYS C 20 1 7 HELIX 6 6 GLN C 89 ALA C 106 1 18 HELIX 7 7 THR D 14 CYS D 20 1 7 HELIX 8 8 GLN D 89 ARG D 103 1 15 SHEET 1 AA 7 LEU A 47 PRO A 54 0 SHEET 2 AA 7 ARG A 34 VAL A 40 -1 O LEU A 35 N TRP A 53 SHEET 3 AA 7 SER A 25 VAL A 30 -1 O VAL A 27 N LEU A 38 SHEET 4 AA 7 SER A 5 VAL A 11 -1 O SER A 5 N VAL A 30 SHEET 5 AA 7 GLY A 81 GLN A 86 -1 O GLN A 86 N THR A 10 SHEET 6 AA 7 MET A 67 ALA A 72 -1 O PHE A 68 N PHE A 85 SHEET 7 AA 7 LEU A 58 ARG A 63 -1 N ARG A 59 O GLU A 71 SHEET 1 BA 7 LEU B 47 PRO B 54 0 SHEET 2 BA 7 ARG B 34 VAL B 40 -1 O LEU B 35 N TRP B 53 SHEET 3 BA 7 SER B 25 VAL B 30 -1 O VAL B 27 N LEU B 38 SHEET 4 BA 7 GLN B 6 VAL B 11 -1 O PHE B 7 N LEU B 28 SHEET 5 BA 7 GLY B 81 GLN B 86 -1 O GLN B 86 N THR B 10 SHEET 6 BA 7 MET B 67 ALA B 72 -1 O PHE B 68 N PHE B 85 SHEET 7 BA 7 LEU B 58 ARG B 63 -1 N ARG B 59 O GLU B 71 SHEET 1 CA 7 LEU C 47 PRO C 54 0 SHEET 2 CA 7 ARG C 34 VAL C 40 -1 O LEU C 35 N TRP C 53 SHEET 3 CA 7 SER C 25 VAL C 30 -1 O VAL C 27 N LEU C 38 SHEET 4 CA 7 GLN C 6 VAL C 11 -1 O PHE C 7 N LEU C 28 SHEET 5 CA 7 GLY C 81 GLN C 86 -1 O GLN C 86 N THR C 10 SHEET 6 CA 7 MET C 67 ALA C 72 -1 O PHE C 68 N PHE C 85 SHEET 7 CA 7 LEU C 58 ARG C 63 -1 N ARG C 59 O GLU C 71 SHEET 1 DA 7 LEU D 47 PRO D 54 0 SHEET 2 DA 7 ARG D 34 VAL D 40 -1 O LEU D 35 N TRP D 53 SHEET 3 DA 7 SER D 25 VAL D 30 -1 O VAL D 27 N LEU D 38 SHEET 4 DA 7 GLN D 6 VAL D 11 -1 O PHE D 7 N LEU D 28 SHEET 5 DA 7 GLY D 81 GLN D 86 -1 O GLN D 86 N THR D 10 SHEET 6 DA 7 MET D 67 ALA D 72 -1 O PHE D 68 N PHE D 85 SHEET 7 DA 7 LEU D 58 ARG D 63 -1 N ARG D 59 O GLU D 71 SITE 1 AC1 4 GLN B 6 TRP B 8 ARG C 19 PRO C 77 SITE 1 AC2 8 ARG A 19 GLN D 6 TRP D 8 HOH D2005 SITE 2 AC2 8 HOH D2083 HOH D2084 HOH D2085 HOH D2086 SITE 1 AC3 9 ARG B 19 PRO B 77 HOH B2030 HOH B2102 SITE 2 AC3 9 HOH B2103 HOH B2104 GLN C 6 TRP C 8 SITE 3 AC3 9 VAL C 27 SITE 1 AC4 4 GLN A 6 TRP A 8 ARG D 19 PRO D 77 SITE 1 AC5 4 ARG D 59 GLY D 73 ARG D 74 ARG D 75 SITE 1 AC6 5 ARG B 59 GLY B 73 ARG B 74 HOH B2105 SITE 2 AC6 5 HOH B2106 SITE 1 AC7 4 ARG A 59 GLY A 73 ARG A 74 HOH A2097 SITE 1 AC8 7 HOH B2028 GLN C 89 ASP C 92 HIS C 102 SITE 2 AC8 7 HOH C2092 HOH C2093 HOH C2094 SITE 1 AC9 4 ARG C 60 TYR C 61 GLU C 98 HOH C2095 SITE 1 BC1 4 ARG A 60 TYR A 61 GLU A 98 HOH A2099 CRYST1 76.880 100.168 67.101 90.00 117.34 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013007 0.000000 0.006725 0.00000 SCALE2 0.000000 0.009983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016777 0.00000