PDB Short entry for 2VJF HEADER LIGASE 10-DEC-07 2VJF TITLE CRYSTAL STRUCTURE OF THE MDM2-MDMX RING DOMAIN HETERODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 383-446; COMPND 5 SYNONYM: P53-BINDING PROTEIN MDM2, ONCOPROTEIN MDM2, DOUBLE MINUTE 2 COMPND 6 PROTEIN, HDM2, MDM2; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MDM4 PROTEIN; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: RESIDUES 428-490; COMPND 13 SYNONYM: P53-BINDING PROTEIN MDM4, MDM2-LIKE P53-BINDING PROTEIN, COMPND 14 MDMX PROTEIN, DOUBLE MINUTE 4 PROTEIN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX6P3 KEYWDS PROTO-ONCOGENE, PHOSPHORYLATION, ALTERNATIVE SPLICING, HOST-VIRUS KEYWDS 2 INTERACTION, UBL CONJUGATION PATHWAY, ZINC-FINGER, POLYMORPHISM, KEYWDS 3 METAL-BINDING, MDM, ZINC, RING, LIGASE, NUCLEUS, CYTOPLASM EXPDTA X-RAY DIFFRACTION AUTHOR P.D.MACE,K.LINKE,C.A.SMITH,C.L.DAY REVDAT 3 09-OCT-19 2VJF 1 REMARK REVDAT 2 24-FEB-09 2VJF 1 VERSN REVDAT 1 13-MAY-08 2VJF 0 JRNL AUTH K.LINKE,P.D.MACE,C.A.SMITH,D.L.VAUX,J.SILKE,C.L.DAY JRNL TITL STRUCTURE OF THE MDM2/MDMX RING DOMAIN HETERODIMER REVEALS JRNL TITL 2 DIMERIZATION IS REQUIRED FOR THEIR UBIQUITYLATION IN TRANS. JRNL REF CELL DEATH DIFFER. V. 15 841 2008 JRNL REFN ISSN 1350-9047 JRNL PMID 18219319 JRNL DOI 10.1038/SJ.CDD.4402309 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 760 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 57 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.41000 REMARK 3 B22 (A**2) : -0.79000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.294 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.882 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2008 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2699 ; 1.468 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 7.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 68 ;27.894 ;22.353 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;15.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.701 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 307 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1448 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 897 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1354 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.132 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1333 ; 0.602 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2077 ; 0.986 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 748 ; 1.319 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 622 ; 2.293 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE BIOLOGICAL UNIT IS A DIMER. THERE ARE 2 REMARK 3 BIOLOGICAL UNITS IN THE ASYMMETRIC UNIT (CHAINS A AND B, AND REMARK 3 CHAINS C AND D) REMARK 4 REMARK 4 2VJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73501 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NH4(SO4)2, 0.5 M NACL, 0.1 M NA REMARK 280 CITRATE, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.89200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 491 C - N - CA ANGL. DEV. = 19.7 DEGREES REMARK 500 PRO A 491 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 CYS B 430 N - CA - C ANGL. DEV. = -25.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 442 13.89 54.57 REMARK 500 MET A 459 -3.69 -148.61 REMARK 500 ARG A 479 8.16 57.63 REMARK 500 PHE A 490 84.14 -150.38 REMARK 500 CYS B 430 -41.33 -159.63 REMARK 500 GLN C 442 17.59 46.65 REMARK 500 MET C 459 -17.28 -144.96 REMARK 500 ARG C 479 13.87 57.31 REMARK 500 ASP D 429 76.34 -117.19 REMARK 500 LEU D 439 -66.51 -90.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 490 PRO A 491 73.08 REMARK 500 ASP B 429 CYS B 430 -57.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1492 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 441 SG REMARK 620 2 CYS A 461 SG 111.3 REMARK 620 3 CYS A 464 SG 113.4 95.8 REMARK 620 4 CYS A 438 SG 109.4 116.4 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1493 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 475 SG REMARK 620 2 HIS A 452 NE2 121.1 REMARK 620 3 HIS A 457 ND1 113.2 103.4 REMARK 620 4 CYS A 478 SG 114.8 97.1 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1491 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 437 SG REMARK 620 2 CYS B 440 SG 107.4 REMARK 620 3 CYS B 463 SG 108.5 109.6 REMARK 620 4 CYS B 460 SG 118.4 115.3 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1492 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 451 NE2 REMARK 620 2 CYS B 477 SG 89.2 REMARK 620 3 HIS B 456 ND1 106.3 111.9 REMARK 620 4 CYS B 474 SG 120.7 114.9 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1492 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 438 SG REMARK 620 2 CYS C 461 SG 116.6 REMARK 620 3 CYS C 441 SG 108.4 110.8 REMARK 620 4 CYS C 464 SG 110.9 99.1 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1493 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 457 ND1 REMARK 620 2 CYS C 475 SG 112.2 REMARK 620 3 HIS C 452 NE2 102.7 124.2 REMARK 620 4 CYS C 478 SG 110.4 110.4 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1491 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 440 SG REMARK 620 2 CYS D 437 SG 106.3 REMARK 620 3 CYS D 463 SG 110.1 109.8 REMARK 620 4 CYS D 460 SG 114.4 116.2 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1492 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 451 NE2 REMARK 620 2 CYS D 474 SG 118.3 REMARK 620 3 CYS D 477 SG 95.3 113.6 REMARK 620 4 HIS D 456 ND1 104.7 111.3 112.5 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 THE SHEETS PRESENTED AS "CA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC D1493 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RV1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN MDM2 WITH AN IMIDAZOLINEINHIBITOR REMARK 900 RELATED ID: 1T4E RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH A BENZODIAZEPINEINHIBITOR REMARK 900 RELATED ID: 1YCR RELATED DB: PDB REMARK 900 MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 1Z1M RELATED DB: PDB REMARK 900 NMR STRUCTURE OF UNLIAGNDED MDM2 REMARK 900 RELATED ID: 2HDP RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HDM2 RING FINGER DOMAIN REMARK 900 RELATED ID: 1T4F RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN MDM2 IN COMPLEX WITH AN OPTIMIZED P53PEPTIDE REMARK 900 RELATED ID: 2AXI RELATED DB: PDB REMARK 900 HDM2 IN COMPLEX WITH A BETA-HAIRPIN REMARK 900 RELATED ID: 2C6A RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C4 ZINC-FINGER DOMAIN OF HDM2 REMARK 900 RELATED ID: 2C6B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C4 ZINC-FINGER DOMAIN OF HDM2 REMARK 900 RELATED ID: 2CR8 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ZF-RANBP DOMAIN OF P53-BINDINGPROTEIN MDM4 REMARK 900 RELATED ID: 2VJE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MDM2-MDMX RING DOMAIN HETERODIMER DBREF 2VJF A 428 491 UNP Q00987 MDM2_HUMAN 383 446 DBREF 2VJF B 428 490 UNP O15151 MDM4_HUMAN 428 490 DBREF 2VJF C 428 491 UNP Q00987 MDM2_HUMAN 383 446 DBREF 2VJF D 428 490 UNP O15151 MDM4_HUMAN 428 490 SEQRES 1 A 64 SER SER LEU PRO LEU ASN ALA ILE GLU PRO CYS VAL ILE SEQRES 2 A 64 CYS GLN GLY ARG PRO LYS ASN GLY CYS ILE VAL HIS GLY SEQRES 3 A 64 LYS THR GLY HIS LEU MET ALA CYS PHE THR CYS ALA LYS SEQRES 4 A 64 LYS LEU LYS LYS ARG ASN LYS PRO CYS PRO VAL CYS ARG SEQRES 5 A 64 GLN PRO ILE GLN MET ILE VAL LEU THR TYR PHE PRO SEQRES 1 B 63 GLU ASP CYS GLN ASN LEU LEU LYS PRO CYS SER LEU CYS SEQRES 2 B 63 GLU LYS ARG PRO ARG ASP GLY ASN ILE ILE HIS GLY ARG SEQRES 3 B 63 THR GLY HIS LEU VAL THR CYS PHE HIS CYS ALA ARG ARG SEQRES 4 B 63 LEU LYS LYS ALA GLY ALA SER CYS PRO ILE CYS LYS LYS SEQRES 5 B 63 GLU ILE GLN LEU VAL ILE LYS VAL PHE ILE ALA SEQRES 1 C 64 SER SER LEU PRO LEU ASN ALA ILE GLU PRO CYS VAL ILE SEQRES 2 C 64 CYS GLN GLY ARG PRO LYS ASN GLY CYS ILE VAL HIS GLY SEQRES 3 C 64 LYS THR GLY HIS LEU MET ALA CYS PHE THR CYS ALA LYS SEQRES 4 C 64 LYS LEU LYS LYS ARG ASN LYS PRO CYS PRO VAL CYS ARG SEQRES 5 C 64 GLN PRO ILE GLN MET ILE VAL LEU THR TYR PHE PRO SEQRES 1 D 63 GLU ASP CYS GLN ASN LEU LEU LYS PRO CYS SER LEU CYS SEQRES 2 D 63 GLU LYS ARG PRO ARG ASP GLY ASN ILE ILE HIS GLY ARG SEQRES 3 D 63 THR GLY HIS LEU VAL THR CYS PHE HIS CYS ALA ARG ARG SEQRES 4 D 63 LEU LYS LYS ALA GLY ALA SER CYS PRO ILE CYS LYS LYS SEQRES 5 D 63 GLU ILE GLN LEU VAL ILE LYS VAL PHE ILE ALA HET ZN A1492 1 HET ZN A1493 1 HET ZN B1491 1 HET ZN B1492 1 HET ZN C1492 1 HET ZN C1493 1 HET ZN D1491 1 HET ZN D1492 1 HET FLC D1493 13 HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION FORMUL 5 ZN 8(ZN 2+) FORMUL 13 FLC C6 H5 O7 3- FORMUL 14 HOH *95(H2 O) HELIX 1 1 PRO A 431 GLU A 436 5 6 HELIX 2 2 CYS A 461 ARG A 471 1 11 HELIX 3 3 CYS B 430 LYS B 435 5 6 HELIX 4 4 CYS B 460 ALA B 470 1 11 HELIX 5 5 PRO C 431 GLU C 436 5 6 HELIX 6 6 CYS C 461 ARG C 471 1 11 HELIX 7 7 ASP D 429 LYS D 435 5 7 HELIX 8 8 CYS D 460 ALA D 470 1 11 SHEET 1 AA 8 GLY A 448 HIS A 452 0 SHEET 2 AA 8 THR A 455 ALA A 460 -1 O THR A 455 N HIS A 452 SHEET 3 AA 8 LEU B 483 ILE B 489 1 O LYS B 486 N GLY A 456 SHEET 4 AA 8 GLY B 447 HIS B 451 -1 O ASN B 448 N ILE B 485 SHEET 5 AA 8 THR B 454 THR B 459 -1 O THR B 454 N HIS B 451 SHEET 6 AA 8 MET A 484 TYR A 489 1 O LEU A 487 N GLY B 455 SHEET 7 AA 8 GLY A 448 HIS A 452 -1 O CYS A 449 N VAL A 486 SHEET 8 AA 8 GLY A 448 HIS A 452 0 SHEET 1 CA 8 GLY C 448 HIS C 452 0 SHEET 2 CA 8 THR C 455 ALA C 460 -1 O THR C 455 N HIS C 452 SHEET 3 CA 8 LEU D 483 ILE D 489 1 O LYS D 486 N GLY C 456 SHEET 4 CA 8 GLY D 447 HIS D 451 -1 O ASN D 448 N ILE D 485 SHEET 5 CA 8 THR D 454 THR D 459 -1 O THR D 454 N HIS D 451 SHEET 6 CA 8 MET C 484 TYR C 489 1 O LEU C 487 N GLY D 455 SHEET 7 CA 8 GLY C 448 HIS C 452 -1 O CYS C 449 N VAL C 486 SHEET 8 CA 8 GLY C 448 HIS C 452 0 LINK ZN ZN A1492 SG CYS A 441 1555 1555 2.40 LINK ZN ZN A1492 SG CYS A 461 1555 1555 2.41 LINK ZN ZN A1492 SG CYS A 464 1555 1555 2.32 LINK ZN ZN A1492 SG CYS A 438 1555 1555 2.15 LINK ZN ZN A1493 SG CYS A 475 1555 1555 2.29 LINK ZN ZN A1493 NE2 HIS A 452 1555 1555 2.20 LINK ZN ZN A1493 ND1 HIS A 457 1555 1555 2.12 LINK ZN ZN A1493 SG CYS A 478 1555 1555 2.36 LINK ZN ZN B1491 SG CYS B 437 1555 1555 2.35 LINK ZN ZN B1491 SG CYS B 440 1555 1555 2.35 LINK ZN ZN B1491 SG CYS B 463 1555 1555 2.45 LINK ZN ZN B1491 SG CYS B 460 1555 1555 2.24 LINK ZN ZN B1492 NE2 HIS B 451 1555 1555 2.10 LINK ZN ZN B1492 SG CYS B 477 1555 1555 2.18 LINK ZN ZN B1492 ND1 HIS B 456 1555 1555 2.24 LINK ZN ZN B1492 SG CYS B 474 1555 1555 2.28 LINK ZN ZN C1492 SG CYS C 438 1555 1555 2.18 LINK ZN ZN C1492 SG CYS C 461 1555 1555 2.31 LINK ZN ZN C1492 SG CYS C 441 1555 1555 2.40 LINK ZN ZN C1492 SG CYS C 464 1555 1555 2.32 LINK ZN ZN C1493 ND1 HIS C 457 1555 1555 2.02 LINK ZN ZN C1493 SG CYS C 475 1555 1555 2.28 LINK ZN ZN C1493 NE2 HIS C 452 1555 1555 2.08 LINK ZN ZN C1493 SG CYS C 478 1555 1555 2.47 LINK ZN ZN D1491 SG CYS D 440 1555 1555 2.46 LINK ZN ZN D1491 SG CYS D 437 1555 1555 2.31 LINK ZN ZN D1491 SG CYS D 463 1555 1555 2.45 LINK ZN ZN D1491 SG CYS D 460 1555 1555 2.28 LINK ZN ZN D1492 NE2 HIS D 451 1555 1555 2.11 LINK ZN ZN D1492 SG CYS D 474 1555 1555 2.36 LINK ZN ZN D1492 SG CYS D 477 1555 1555 2.20 LINK ZN ZN D1492 ND1 HIS D 456 1555 1555 2.19 CISPEP 1 GLU D 428 ASP D 429 0 13.89 SITE 1 AC1 4 CYS A 438 CYS A 441 CYS A 461 CYS A 464 SITE 1 AC2 4 HIS A 452 HIS A 457 CYS A 475 CYS A 478 SITE 1 AC3 4 CYS B 437 CYS B 440 CYS B 460 CYS B 463 SITE 1 AC4 4 HIS B 451 HIS B 456 CYS B 474 CYS B 477 SITE 1 AC5 4 CYS C 438 CYS C 441 CYS C 461 CYS C 464 SITE 1 AC6 4 HIS C 452 HIS C 457 CYS C 475 CYS C 478 SITE 1 AC7 4 CYS D 437 CYS D 440 CYS D 460 CYS D 463 SITE 1 AC8 4 HIS D 451 HIS D 456 CYS D 474 CYS D 477 SITE 1 AC9 4 LYS D 442 ARG D 443 HIS D 462 ARG D 466 CRYST1 54.216 41.784 76.939 90.00 109.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018445 0.000000 0.006362 0.00000 SCALE2 0.000000 0.023933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013749 0.00000