PDB Short entry for 2VJJ HEADER VIRAL PROTEIN 11-DEC-07 2VJJ TITLE TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 IN COMPLEX WITH TITLE 2 HEXASACCHARIDE CAVEAT 2VJJ NAG B 1 HAS WRONG CHIRALITY AT ATOM C1 GAL B 2 HAS WRONG CAVEAT 2 2VJJ CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAILSPIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LACKING THE N-TERMINAL HEAD-BINDING DOMAIN, RESIDUES 111- COMPND 5 710; COMPND 6 SYNONYM: TAILSPIKE PROTEIN HK620; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: COMPLEXED WITH HEXASACCHARIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA PHAGE HK620; SOURCE 3 ORGANISM_TAXID: 155148; SOURCE 4 STRAIN: H; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS VIRAL PROTEIN, ENDO-N-ACETYLGLUCOSAMINIDASE, VIRAL ADHESION PROTEIN, KEYWDS 2 RIGHT-HANDED PARALLEL BETA-HELIX, HYDROLASE, TAILSPIKE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.MUELLER,S.BARBIRZ,C.UETRECHT,R.SECKLER,U.HEINEMANN REVDAT 7 13-DEC-23 2VJJ 1 HETSYN REVDAT 6 29-JUL-20 2VJJ 1 CAVEAT COMPND REMARK HETNAM REVDAT 6 2 1 LINK SITE ATOM REVDAT 5 06-FEB-19 2VJJ 1 REMARK REVDAT 4 30-JAN-19 2VJJ 1 REMARK REVDAT 3 21-JAN-15 2VJJ 1 COMPND SOURCE KEYWDS JRNL REVDAT 3 2 1 REMARK VERSN HET HETNAM REVDAT 3 3 1 HETSYN FORMUL LINK SITE REVDAT 3 4 1 HETATM CONECT MASTER REVDAT 2 24-FEB-09 2VJJ 1 VERSN REVDAT 1 01-JUL-08 2VJJ 0 JRNL AUTH S.BARBIRZ,J.J.MUELLER,C.UETRECHT,A.J.CLARK,U.HEINEMANN, JRNL AUTH 2 R.SECKLER JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI PHAGE HK620 TAILSPIKE: JRNL TITL 2 PODOVIRAL TAILSPIKE ENDOGLYCOSIDASE MODULES ARE JRNL TITL 3 EVOLUTIONARILY RELATED. JRNL REF MOL.MICROBIOL. V. 69 303 2008 JRNL REFN ISSN 0950-382X JRNL PMID 18547389 JRNL DOI 10.1111/J.1365-2958.2008.06311.X REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 69829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3711 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 15 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6187 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 324 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 731 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.073 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4837 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3087 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6608 ; 1.303 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7461 ; 1.772 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 7.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;34.356 ;24.430 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 683 ;11.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.070 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5541 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1025 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 935 ; 0.252 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3380 ; 0.221 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2414 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2554 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 496 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 139 ; 0.264 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 101 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2994 ; 2.292 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4832 ; 3.162 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1875 ; 5.217 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1761 ; 7.812 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE MOLECULE IS A FRAGMENT (RESIDUES 109- 709) REMARK 3 LACKING THE N-TERMINAL PUTATIVE HEAD BINDING DOMAIN. REMARK 4 REMARK 4 2VJJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-07. REMARK 100 THE DEPOSITION ID IS D_1290034650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73235 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 19.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 83.50 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.13000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2VJI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, HANGING DROP: PROTEIN REMARK 280 CONCENTRATION 8MG/ML. BUFFER: 40MM TRIS, PH8.0, 2 MM EDTA,0.2M REMARK 280 NACL.RERVOIR: 20% ISOPROPANOL,0.1 M NA-ACETATE,PH6.0,0.2M CACL2. REMARK 280 DROPLET 1.5:1.5 MICRO LITER. 30MM HEXASACCHARIDE. CRYO:30% REMARK 280 GLYCEROL.TEMPERATURE 20 DEGREE CELSIUS., TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 25570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 36.95500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 64.00794 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -36.95500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 64.00794 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2144 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2352 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2356 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2376 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2422 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2713 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 110 REMARK 465 PRO A 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 112 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 215 -60.41 -97.90 REMARK 500 ASN A 303 65.83 62.29 REMARK 500 ASN A 303 61.90 66.32 REMARK 500 ASP A 339 148.80 -179.06 REMARK 500 ASP A 441 64.99 62.62 REMARK 500 THR A 530 -114.42 -125.77 REMARK 500 THR A 613 -60.17 -100.62 REMARK 500 THR A 678 -167.96 -116.20 REMARK 500 THR A 678 -163.95 -120.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 O18A1 HEXASACCHARIDE RESIDUES: A720-A725 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 710 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 211 O REMARK 620 2 HOH A2137 O 76.6 REMARK 620 3 HOH A2138 O 74.4 74.1 REMARK 620 4 HOH A2203 O 76.8 98.8 151.3 REMARK 620 5 HOH A2250 O 133.7 78.0 133.0 69.6 REMARK 620 6 HOH A2719 O 142.3 89.7 68.0 140.6 74.8 REMARK 620 7 RAM B 4 O3 82.7 147.4 76.2 100.7 133.5 91.5 REMARK 620 8 RAM B 4 O2 129.9 146.0 128.3 72.5 68.0 79.1 65.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 712 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 213 OG REMARK 620 2 HOH A2138 O 84.7 REMARK 620 3 HOH A2271 O 78.5 88.5 REMARK 620 4 RAM B 4 O3 135.6 56.3 116.6 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VJI RELATED DB: PDB REMARK 900 TAILSPIKE PROTEIN OF E.COLI BACTERIOPHAGE HK620 DBREF 2VJJ A 110 709 UNP Q9AYY6 Q9AYY6_BPHK6 111 710 SEQRES 1 A 600 ASP PRO ASP GLN PHE ARG ALA ILE ILE GLU SER PRO GLU SEQRES 2 A 600 GLY ALA GLY HIS VAL GLY TYR GLN TYR ARG ARG ASN THR SEQRES 3 A 600 GLY SER THR MET ARG MET VAL SER ASP VAL LEU ASP GLU SEQRES 4 A 600 ARG VAL SER LEU TRP ASP PHE HIS CYS ASP PRO SER GLY SEQRES 5 A 600 ASN VAL ILE GLN PRO GLY PRO ASN VAL ASP SER ARG GLN SEQRES 6 A 600 TYR LEU GLN ALA ALA ILE ASP TYR VAL SER SER ASN GLY SEQRES 7 A 600 GLY GLY THR ILE THR ILE PRO ALA GLY TYR THR TRP TYR SEQRES 8 A 600 LEU GLY SER TYR GLY VAL GLY GLY ILE ALA GLY HIS SER SEQRES 9 A 600 GLY ILE ILE GLN LEU ARG SER ASN VAL ASN LEU ASN ILE SEQRES 10 A 600 GLU GLY ARG ILE HIS LEU SER PRO PHE PHE ASP LEU LYS SEQRES 11 A 600 PRO PHE GLN VAL PHE VAL GLY PHE ASP ASN GLY ASP PRO SEQRES 12 A 600 ALA SER SER GLY ASN LEU GLU ASN CYS HIS ILE TYR GLY SEQRES 13 A 600 HIS GLY VAL VAL ASP PHE GLY GLY TYR GLU PHE GLY ALA SEQRES 14 A 600 SER SER GLN LEU ARG ASN GLY VAL ALA PHE GLY ARG SER SEQRES 15 A 600 TYR ASN CYS SER VAL THR GLY ILE THR PHE GLN ASN GLY SEQRES 16 A 600 ASP VAL THR TRP ALA ILE THR LEU GLY TRP ASN GLY TYR SEQRES 17 A 600 GLY SER ASN CYS TYR VAL ARG LYS CYS ARG PHE ILE ASN SEQRES 18 A 600 LEU VAL ASN SER SER VAL ASN ALA ASP HIS SER THR VAL SEQRES 19 A 600 TYR VAL ASN CYS PRO TYR SER GLY VAL GLU SER CYS TYR SEQRES 20 A 600 PHE SER MET SER SER SER PHE ALA ARG ASN ILE ALA CYS SEQRES 21 A 600 SER VAL GLU LEU HIS GLN HIS ASP THR PHE TYR ARG GLY SEQRES 22 A 600 SER THR VAL ASN GLY TYR CYS ARG GLY ALA TYR VAL VAL SEQRES 23 A 600 MET HIS ALA ALA GLU ALA ALA GLY ALA GLY SER TYR ALA SEQRES 24 A 600 TYR ASN MET GLN VAL GLU ASN ASN ILE ALA VAL ILE TYR SEQRES 25 A 600 GLY GLN PHE VAL ILE LEU GLY SER ASP VAL THR ALA THR SEQRES 26 A 600 VAL SER GLY HIS LEU ASN ASP VAL ILE VAL SER GLY ASN SEQRES 27 A 600 ILE VAL SER ILE GLY GLU ARG ALA ALA PHE SER ALA PRO SEQRES 28 A 600 PHE GLY ALA PHE ILE ASP ILE GLY PRO ASP ASN SER GLY SEQRES 29 A 600 ALA SER ASN VAL GLN ASP ILE GLN ARG VAL LEU VAL THR SEQRES 30 A 600 GLY ASN SER PHE TYR ALA PRO ALA ASN ILE THR ASP SER SEQRES 31 A 600 ALA ALA ILE THR LEU ARG ALA ASN LEU ASN GLY CYS THR SEQRES 32 A 600 PHE ILE ALA ASN ASN PHE ASP CYS ARG TYR MET VAL TYR SEQRES 33 A 600 ASN ALA PRO GLY THR THR SER PRO VAL VAL GLN ASN LEU SEQRES 34 A 600 VAL TRP ASP LYS SER ASN VAL ILE GLY GLY THR HIS ALA SEQRES 35 A 600 ASN GLN ARG ALA GLY GLN ASN LEU PHE ASP MET GLN PHE SEQRES 36 A 600 ALA SER VAL VAL ASN SER THR ILE GLU VAL GLN LEU SER SEQRES 37 A 600 CYS GLU ASP LEU SER MET PHE SER CYS ILE LEU PHE PRO SEQRES 38 A 600 ALA SER CYS GLN LEU SER TYR SER LYS ILE THR VAL ASP SEQRES 39 A 600 SER ALA TRP THR LYS SER MET SER ASN THR ALA VAL PHE SEQRES 40 A 600 GLU GLY ASN GLN GLN ALA GLY ALA ASN VAL TYR VAL SER SEQRES 41 A 600 TYR PRO ALA THR VAL ASN LEU THR SER TYR ASN THR GLN SEQRES 42 A 600 GLY ALA VAL PRO PHE PHE SER THR ASP THR ASN TYR ALA SEQRES 43 A 600 TRP VAL THR SER ALA TYR SER LEU SER ILE ASN GLU ASN SEQRES 44 A 600 LEU ASP PHE SER PRO PRO ALA THR TYR THR ASN LYS ALA SEQRES 45 A 600 ASN GLY GLN LEU VAL GLY VAL GLY TYR ASN GLU ILE GLY SEQRES 46 A 600 GLY VAL ARG SER VAL SER VAL ARG LEU MET LEU GLN ARG SEQRES 47 A 600 GLN VAL HET NAG B 1 16 HET GAL B 2 11 HET GLC B 3 11 HET RAM B 4 10 HET NAG B 5 18 HET GLC B 6 11 HET CA A 710 1 HET CL A 711 1 HET K A 712 1 HET GOL A 713 6 HET GOL A 714 6 HET GOL A 715 6 HET GOL A 716 6 HET GOL A 717 6 HET GOL A 718 6 HET GOL A 719 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 RAM C6 H12 O5 FORMUL 3 CA CA 2+ FORMUL 4 CL CL 1- FORMUL 5 K K 1+ FORMUL 6 GOL 7(C3 H8 O3) FORMUL 13 HOH *731(H2 O) HELIX 1 1 ASP A 112 SER A 120 1 9 HELIX 2 2 GLU A 122 HIS A 126 5 5 HELIX 3 3 GLN A 130 ASN A 134 5 5 HELIX 4 4 VAL A 142 ASP A 147 1 6 HELIX 5 5 LEU A 152 PHE A 155 5 4 HELIX 6 6 SER A 172 ASN A 186 1 15 HELIX 7 7 VAL A 206 HIS A 212 5 7 HELIX 8 8 PRO A 234 ASP A 237 5 4 HELIX 9 9 ASP A 251 SER A 255 5 5 HELIX 10 10 PHE A 363 ILE A 367 1 5 HELIX 11 11 HIS A 397 ALA A 401 5 5 HELIX 12 12 ASN A 619 GLY A 623 5 5 SHEET 1 AA18 GLY A 189 ILE A 193 0 SHEET 2 AA18 ASN A 221 GLU A 227 1 O ASN A 221 N GLY A 189 SHEET 3 AA18 ASN A 260 GLY A 265 1 O ASN A 260 N ASN A 221 SHEET 4 AA18 ASN A 293 THR A 297 1 O ASN A 293 N ASN A 260 SHEET 5 AA18 CYS A 321 LYS A 325 1 N TYR A 322 O CYS A 294 SHEET 6 AA18 SER A 350 SER A 354 1 N GLY A 351 O CYS A 321 SHEET 7 AA18 ASP A 377 GLY A 382 1 N PHE A 379 O SER A 350 SHEET 8 AA18 ASN A 410 ASN A 415 1 O ASN A 410 N THR A 378 SHEET 9 AA18 ASP A 441 GLY A 446 1 O ASP A 441 N MET A 411 SHEET 10 AA18 ARG A 482 GLY A 487 1 O ARG A 482 N VAL A 442 SHEET 11 AA18 CYS A 511 ILE A 514 1 N THR A 512 O VAL A 483 SHEET 12 AA18 ASN A 537 ASP A 541 1 O ASN A 537 N CYS A 511 SHEET 13 AA18 SER A 570 VAL A 574 1 N THR A 571 O LEU A 538 SHEET 14 AA18 SER A 598 ASP A 603 1 N LYS A 599 O SER A 570 SHEET 15 AA18 ASN A 625 TYR A 639 1 O ASN A 625 N SER A 598 SHEET 16 AA18 ARG A 697 ARG A 707 -1 O ARG A 697 N SER A 638 SHEET 17 AA18 SER A 659 LEU A 663 -1 O TYR A 661 N MET A 704 SHEET 18 AA18 ALA A 675 LYS A 680 -1 O ALA A 675 N SER A 662 SHEET 1 AB 3 LEU A 258 GLU A 259 0 SHEET 2 AB 3 ARG A 290 TYR A 292 1 O ARG A 290 N LEU A 258 SHEET 3 AB 3 TYR A 317 SER A 319 1 N SER A 319 O SER A 291 SHEET 1 AC 3 TYR A 407 TYR A 409 0 SHEET 2 AC 3 HIS A 438 ASN A 440 1 O HIS A 438 N ALA A 408 SHEET 3 AC 3 ASP A 479 GLN A 481 1 O ASP A 479 N LEU A 439 SHEET 1 AD 3 PRO A 533 GLN A 536 0 SHEET 2 AD 3 ALA A 565 ASN A 569 1 N VAL A 535 O SER A 566 SHEET 3 AD 3 GLN A 594 SER A 596 1 O GLN A 594 N VAL A 567 SHEET 1 AE12 TYR A 197 LEU A 201 0 SHEET 2 AE12 GLY A 228 SER A 233 1 O TYR A 197 N ARG A 229 SHEET 3 AE12 GLY A 267 PHE A 271 1 O GLY A 228 N VAL A 268 SHEET 4 AE12 ILE A 299 ASN A 303 1 O GLY A 267 N THR A 300 SHEET 5 AE12 CYS A 326 ASN A 330 1 O ILE A 299 N ARG A 327 SHEET 6 AE12 CYS A 355 MET A 359 1 O CYS A 326 N TYR A 356 SHEET 7 AE12 SER A 383 TYR A 388 1 O CYS A 355 N THR A 384 SHEET 8 AE12 ASN A 416 TYR A 421 1 O SER A 383 N ILE A 417 SHEET 9 AE12 ASN A 447 GLY A 452 1 O ASN A 416 N ILE A 448 SHEET 10 AE12 ASN A 488 ALA A 492 1 O ASN A 447 N SER A 489 SHEET 11 AE12 ASN A 516 ASP A 519 1 O ASN A 488 N ASN A 517 SHEET 12 AE12 VAL A 545 GLY A 547 1 O ASN A 516 N VAL A 545 SHEET 1 AF14 SER A 213 LEU A 218 0 SHEET 2 AF14 PHE A 241 GLY A 246 1 O SER A 213 N GLN A 242 SHEET 3 AF14 LEU A 282 PHE A 288 1 O PHE A 241 N ASN A 284 SHEET 4 AF14 ALA A 309 LEU A 312 1 N VAL A 286 O ALA A 309 SHEET 5 AF14 HIS A 340 ASN A 346 1 N ILE A 310 O THR A 342 SHEET 6 AF14 ALA A 368 HIS A 374 1 N VAL A 343 O SER A 370 SHEET 7 AF14 ARG A 390 MET A 396 1 N VAL A 371 O GLY A 391 SHEET 8 AF14 GLY A 422 ASP A 430 1 N ALA A 392 O PHE A 424 SHEET 9 AF14 GLY A 462 GLY A 468 1 N VAL A 425 O PHE A 464 SHEET 10 AF14 ASP A 498 ARG A 505 1 N ILE A 465 O ALA A 501 SHEET 11 AF14 TYR A 522 TYR A 525 1 N ALA A 501 O TYR A 522 SHEET 12 AF14 GLN A 557 MET A 562 1 N MET A 523 O LEU A 559 SHEET 13 AF14 SER A 585 PHE A 589 1 N LEU A 559 O SER A 585 SHEET 14 AF14 THR A 613 GLU A 617 1 N CYS A 586 O THR A 613 SHEET 1 AG 3 GLY A 643 THR A 650 0 SHEET 2 AG 3 GLN A 684 GLU A 692 -1 O GLY A 643 N ASN A 691 SHEET 3 AG 3 ASP A 670 SER A 672 -1 O ASP A 670 N GLU A 692 LINK O3 NAG B 1 C1 GAL B 2 1555 1555 1.44 LINK O6 NAG B 1 C1 GLC B 6 1555 1555 1.82 LINK O4 GAL B 2 C1 GLC B 3 1555 1555 1.42 LINK O3 GAL B 2 C1 NAG B 5 1555 1555 1.58 LINK O6 GLC B 3 C1 RAM B 4 1555 1555 1.42 LINK O GLY A 211 CA CA A 710 1555 1555 2.48 LINK OG SER A 213 K K A 712 1555 1555 3.11 LINK CA CA A 710 O HOH A2137 1555 1555 2.45 LINK CA CA A 710 O HOH A2138 1555 1555 2.48 LINK CA CA A 710 O HOH A2203 1555 1555 2.36 LINK CA CA A 710 O HOH A2250 1555 3555 2.58 LINK CA CA A 710 O HOH A2719 1555 1555 2.38 LINK CA CA A 710 O3 RAM B 4 1555 1555 2.40 LINK CA CA A 710 O2 RAM B 4 1555 1555 2.50 LINK K K A 712 O HOH A2138 1555 1555 3.28 LINK K K A 712 O HOH A2271 1555 1555 3.22 LINK K K A 712 O3 RAM B 4 1555 1555 3.09 CRYST1 73.910 73.910 174.590 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013530 0.007812 0.000000 0.00000 SCALE2 0.000000 0.015623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005728 0.00000