PDB Short entry for 2VL7 HEADER UNKNOWN FUNCTION 08-JAN-08 2VL7 TITLE STRUCTURE OF S. TOKODAII XPD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: XPD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCHARACTERIZED PROTEIN ST1307; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TOKODAII; SOURCE 3 ORGANISM_TAXID: 111955; SOURCE 4 STRAIN: 7; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET DERIVED KEYWDS HELICASE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,K.A.JOHNSON,M.OKE,S.A.MCMAHON,L.LIU,M.F.WHITE, AUTHOR 2 M.ZAWADSKI,L.G.CARTER REVDAT 4 13-JUL-11 2VL7 1 VERSN REVDAT 3 24-FEB-09 2VL7 1 VERSN REVDAT 2 17-JUN-08 2VL7 1 JRNL REVDAT 1 13-MAY-08 2VL7 0 JRNL AUTH L.LIU,K.A.JOHNSON,J.RUDOLF,A.-M.MCROBBIE,S.A.MCMAHON,M.OKE, JRNL AUTH 2 L.G.CARTER,J.H.NAISMITH,M.F.WHITE JRNL TITL STRUCTURE OF THE DNA REPAIR HELICASE XPD. JRNL REF CELL(CAMBRIDGE,MASS.) V. 133 801 2008 JRNL REFN ISSN 0092-8674 JRNL PMID 18510925 JRNL DOI 10.1016/J.CELL.2008.04.029 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1472 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1952 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3712 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : -1.57000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.293 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.234 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.109 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3776 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2673 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5081 ; 1.197 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6540 ; 1.016 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 6.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 160 ;34.388 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 761 ;15.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.576 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4021 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 747 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2674 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1796 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2048 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 114 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.092 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.195 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3021 ; 0.821 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3712 ; 0.922 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.261 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1369 ; 1.827 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 196 REMARK 3 RESIDUE RANGE : A 308 A 348 REMARK 3 RESIDUE RANGE : A 1541 A 1541 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0390 25.8780 21.8830 REMARK 3 T TENSOR REMARK 3 T11: -0.1037 T22: -0.1543 REMARK 3 T33: -0.0189 T12: 0.0850 REMARK 3 T13: -0.0693 T23: -0.1156 REMARK 3 L TENSOR REMARK 3 L11: 7.4634 L22: 3.9048 REMARK 3 L33: 2.6797 L12: -2.5363 REMARK 3 L13: 1.4582 L23: -0.6820 REMARK 3 S TENSOR REMARK 3 S11: -0.5627 S12: -0.7751 S13: 1.1151 REMARK 3 S21: 0.4928 S22: 0.1772 S23: -0.6302 REMARK 3 S31: -0.7531 S32: -0.2277 S33: 0.3855 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 17.3340 3.8800 27.8430 REMARK 3 T TENSOR REMARK 3 T11: -0.1546 T22: -0.1352 REMARK 3 T33: -0.0558 T12: -0.1385 REMARK 3 T13: -0.0256 T23: -0.1425 REMARK 3 L TENSOR REMARK 3 L11: 5.3958 L22: 2.8928 REMARK 3 L33: 7.6586 L12: -0.6815 REMARK 3 L13: 2.2992 L23: -0.7246 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: -0.4118 S13: 0.3469 REMARK 3 S21: 0.6713 S22: 0.0884 S23: -0.3857 REMARK 3 S31: -0.5482 S32: 0.8248 S33: -0.4097 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 540 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8600 29.3020 -1.3330 REMARK 3 T TENSOR REMARK 3 T11: -0.1580 T22: -0.1375 REMARK 3 T33: -0.0288 T12: -0.0956 REMARK 3 T13: 0.0602 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 5.6578 L22: 3.6318 REMARK 3 L33: 3.6139 L12: 2.4016 REMARK 3 L13: -3.8437 L23: -2.2415 REMARK 3 S TENSOR REMARK 3 S11: 0.4159 S12: 0.1235 S13: 1.1140 REMARK 3 S21: 0.2753 S22: 0.2567 S23: 0.3963 REMARK 3 S31: -0.6755 S32: -0.0229 S33: -0.6727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-08. REMARK 100 THE PDBE ID CODE IS EBI-34959. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27650 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.25 REMARK 200 RESOLUTION RANGE LOW (A) : 29.70 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.9 REMARK 200 R MERGE FOR SHELL (I) : 0.43 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.85650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.14700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.85650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.14700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 ILE A 82 REMARK 465 GLY A 83 REMARK 465 LYS A 84 REMARK 465 SER A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 CYS A 88 REMARK 465 ILE A 89 REMARK 465 TYR A 90 REMARK 465 ALA A 91 REMARK 465 GLN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 GLU A 95 REMARK 465 GLU A 96 REMARK 465 PRO A 97 REMARK 465 ASP A 98 REMARK 465 GLU A 99 REMARK 465 ILE A 100 REMARK 465 ASN A 101 REMARK 465 CYS A 102 REMARK 465 SER A 103 REMARK 465 LYS A 104 REMARK 465 CYS A 105 REMARK 465 ARG A 106 REMARK 465 LEU A 107 REMARK 465 LYS A 108 REMARK 465 ASP A 109 REMARK 465 LYS A 110 REMARK 465 ILE A 111 REMARK 465 LYS A 112 REMARK 465 THR A 113 REMARK 465 ILE A 114 REMARK 465 GLU A 115 REMARK 465 ASP A 116 REMARK 465 LYS A 117 REMARK 465 GLU A 118 REMARK 465 PRO A 119 REMARK 465 SER A 120 REMARK 465 LYS A 121 REMARK 465 LEU A 122 REMARK 465 ILE A 123 REMARK 465 GLU A 124 REMARK 465 GLU A 125 REMARK 465 PHE A 126 REMARK 465 LYS A 127 REMARK 465 ASP A 128 REMARK 465 ALA A 129 REMARK 465 VAL A 130 REMARK 465 ASP A 131 REMARK 465 TYR A 132 REMARK 465 CYS A 133 REMARK 465 PRO A 134 REMARK 465 TYR A 135 REMARK 465 TYR A 136 REMARK 465 SER A 137 REMARK 465 LEU A 138 REMARK 465 TYR A 347 REMARK 465 ARG A 437 REMARK 465 ALA A 438 REMARK 465 LYS A 439 REMARK 465 GLU A 440 REMARK 465 SER A 441 REMARK 465 GLU A 442 REMARK 465 GLY A 443 REMARK 465 VAL A 444 REMARK 465 GLU A 445 REMARK 465 PHE A 446 REMARK 465 ARG A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLU A 450 REMARK 465 ASN A 451 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 165 54.07 -106.08 REMARK 500 ASP A 170 30.02 -77.69 REMARK 500 LEU A 216 -80.96 -103.62 REMARK 500 ARG A 218 80.34 66.93 REMARK 500 ASP A 241 -157.19 -119.93 REMARK 500 PRO A 275 -70.80 -63.62 REMARK 500 LYS A 278 135.87 -5.13 REMARK 500 ARG A 349 51.70 -165.93 REMARK 500 GLU A 412 -90.19 -81.58 REMARK 500 LYS A 414 91.40 -55.55 REMARK 500 LYS A 415 -26.00 66.85 REMARK 500 PRO A 509 -38.77 -39.32 REMARK 500 TYR A 512 62.33 -106.45 REMARK 500 CYS A 518 67.81 -100.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 271 11.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1541 DBREF 2VL7 A 1 540 UNP Q971R4 Q971R4_SULTO 1 540 SEQRES 1 A 540 MET GLU VAL LEU LYS LEU GLN LEU ARG GLN TRP GLN ALA SEQRES 2 A 540 GLU LYS LEU GLY GLU ALA ILE ASN ALA LEU LYS HIS GLY SEQRES 3 A 540 LYS THR LEU LEU LEU ASN ALA LYS PRO GLY LEU GLY LYS SEQRES 4 A 540 THR VAL PHE VAL GLU VAL LEU GLY MET GLN LEU LYS LYS SEQRES 5 A 540 LYS VAL LEU ILE PHE THR ARG THR HIS SER GLN LEU ASP SEQRES 6 A 540 SER ILE TYR LYS ASN ALA LYS LEU LEU GLY LEU LYS THR SEQRES 7 A 540 GLY PHE LEU ILE GLY LYS SER ALA SER CYS ILE TYR ALA SEQRES 8 A 540 GLN GLY ASP GLU GLU PRO ASP GLU ILE ASN CYS SER LYS SEQRES 9 A 540 CYS ARG LEU LYS ASP LYS ILE LYS THR ILE GLU ASP LYS SEQRES 10 A 540 GLU PRO SER LYS LEU ILE GLU GLU PHE LYS ASP ALA VAL SEQRES 11 A 540 ASP TYR CYS PRO TYR TYR SER LEU ARG ALA ASN LEU LYS SEQRES 12 A 540 ASP LYS ASP VAL ILE ALA MET THR TYR PRO TYR LEU PHE SEQRES 13 A 540 GLN LYS PRO ILE ARG ASN SER VAL PHE CYS ASN LYS ASP SEQRES 14 A 540 ASP CYS LEU LYS LEU GLU ASP TYR LEU ILE VAL ILE ASP SEQRES 15 A 540 GLU ALA HIS ASN LEU LEU GLU ALA ASP LYS TRP PHE THR SEQRES 16 A 540 ARG LYS ILE SER ARG LYS MET LEU GLU ARG ALA LEU LYS SEQRES 17 A 540 GLU ILE GLU ILE VAL GLU ARG LEU ASN ARG ILE ASP ALA SEQRES 18 A 540 LYS LYS VAL LYS ASP TYR ILE ASN LEU LEU ILE ASP TYR SEQRES 19 A 540 MET SER LYS LEU ILE LYS ASP GLY ARG CYS HIS GLU LEU SEQRES 20 A 540 SER LEU MET PRO LEU PRO ASP ARG GLU THR ASN GLY GLU SEQRES 21 A 540 LEU ILE VAL VAL THR ARG ALA TYR LEU ASN ILE ASP GLU SEQRES 22 A 540 GLY PRO VAL LYS LYS SER SER LEU LYS SER LEU LEU LYS SEQRES 23 A 540 PHE VAL GLU MET LYS GLY ASP LEU TYR ASN CYS ASN GLY SEQRES 24 A 540 SER LEU VAL LYS VAL PRO SER ASP VAL ASN GLN LEU ILE SEQRES 25 A 540 GLU ASP ALA LEU ASN VAL LYS THR PHE LYS VAL LEU MET SEQRES 26 A 540 SER GLY THR LEU PRO GLU SER LEU THR LEU THR ASN SER SEQRES 27 A 540 TYR LYS ILE VAL VAL ASN GLU SER TYR GLY ARG GLY GLU SEQRES 28 A 540 TYR TYR TYR CYS PRO ASN VAL THR SER GLU LEU ARG LYS SEQRES 29 A 540 ARG ASN SER ASN ILE PRO ILE TYR SER ILE LEU LEU LYS SEQRES 30 A 540 ARG ILE TYR GLU ASN SER SER LYS SER VAL LEU VAL PHE SEQRES 31 A 540 PHE PRO SER TYR GLU MET LEU GLU SER VAL ARG ILE HIS SEQRES 32 A 540 LEU SER GLY ILE PRO VAL ILE GLU GLU ASN LYS LYS THR SEQRES 33 A 540 ARG HIS GLU GLU VAL LEU GLU LEU MET LYS THR GLY LYS SEQRES 34 A 540 TYR LEU VAL MET LEU VAL MET ARG ALA LYS GLU SER GLU SEQRES 35 A 540 GLY VAL GLU PHE ARG GLU LYS GLU ASN LEU PHE GLU SER SEQRES 36 A 540 LEU VAL LEU ALA GLY LEU PRO TYR PRO ASN VAL SER ASP SEQRES 37 A 540 ASP MET VAL ARG LYS ARG ILE GLU ARG LEU SER LYS LEU SEQRES 38 A 540 THR GLY LYS ASP GLU ASP SER ILE ILE HIS ASP LEU THR SEQRES 39 A 540 ALA ILE VAL ILE LYS GLN THR ILE GLY ARG ALA PHE ARG SEQRES 40 A 540 ASP PRO ASN ASP TYR VAL LYS ILE TYR LEU CYS ASP SER SEQRES 41 A 540 ARG TYR ARG GLU TYR PHE ALA ASP LEU GLY ILE SER GLU SEQRES 42 A 540 LYS GLU ILE LYS LEU PHE ALA HET PO4 A1541 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *73(H2 O) HELIX 1 1 GLN A 10 HIS A 25 1 16 HELIX 2 2 GLY A 38 LYS A 51 1 14 HELIX 3 3 THR A 60 LYS A 72 1 13 HELIX 4 4 LEU A 73 GLY A 75 5 3 HELIX 5 5 ASN A 141 LYS A 145 5 5 HELIX 6 6 TYR A 152 GLN A 157 1 6 HELIX 7 7 GLN A 157 PHE A 165 1 9 HELIX 8 8 LYS A 173 GLU A 175 5 3 HELIX 9 9 GLU A 183 THR A 195 5 13 HELIX 10 10 SER A 199 LEU A 216 1 18 HELIX 11 11 ALA A 221 LYS A 237 1 17 HELIX 12 12 ASP A 254 ASN A 270 1 17 HELIX 13 13 SER A 279 MET A 290 1 12 HELIX 14 14 ASP A 307 LEU A 316 1 10 HELIX 15 15 GLU A 361 ARG A 363 5 3 HELIX 16 16 LYS A 364 ASN A 382 1 19 HELIX 17 17 SER A 393 ILE A 402 1 10 HELIX 18 18 ARG A 417 THR A 427 1 11 HELIX 19 19 ASP A 468 GLY A 483 1 16 HELIX 20 20 ASP A 485 PHE A 506 1 22 HELIX 21 21 ASP A 519 PHE A 526 5 8 SHEET 1 AA 7 THR A 78 LEU A 81 0 SHEET 2 AA 7 VAL A 147 THR A 151 1 O VAL A 147 N GLY A 79 SHEET 3 AA 7 LYS A 53 THR A 58 1 O VAL A 54 N ILE A 148 SHEET 4 AA 7 TYR A 177 ILE A 181 1 O LEU A 178 N LEU A 55 SHEET 5 AA 7 LYS A 322 SER A 326 1 O VAL A 323 N ILE A 181 SHEET 6 AA 7 THR A 28 ASN A 32 1 O LEU A 29 N LEU A 324 SHEET 7 AA 7 SER A 338 VAL A 342 1 O TYR A 339 N LEU A 30 SHEET 1 AB 4 ARG A 196 ILE A 198 0 SHEET 2 AB 4 SER A 300 VAL A 304 -1 O LEU A 301 N ILE A 198 SHEET 3 AB 4 ASP A 293 CYS A 297 -1 O ASP A 293 N VAL A 304 SHEET 4 AB 4 CYS A 244 LEU A 247 -1 O HIS A 245 N ASN A 296 SHEET 1 AC 7 VAL A 409 GLU A 411 0 SHEET 2 AC 7 LEU A 431 VAL A 435 1 O LEU A 431 N ILE A 410 SHEET 3 AC 7 SER A 386 PHE A 391 1 O VAL A 387 N VAL A 432 SHEET 4 AC 7 PHE A 453 ALA A 459 1 N GLU A 454 O SER A 386 SHEET 5 AC 7 LYS A 514 CYS A 518 1 O LYS A 514 N LEU A 456 SHEET 6 AC 7 GLU A 351 TYR A 354 1 O GLU A 351 N ILE A 515 SHEET 7 AC 7 LYS A 537 LEU A 538 1 O LYS A 537 N TYR A 354 SSBOND 1 CYS A 166 CYS A 171 1555 1555 2.03 SSBOND 2 CYS A 244 CYS A 297 1555 1555 2.05 SSBOND 3 CYS A 355 CYS A 518 1555 1555 2.06 SITE 1 AC1 5 PRO A 35 GLY A 36 LEU A 37 GLY A 38 SITE 2 AC1 5 LYS A 39 CRYST1 95.713 100.294 62.488 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010448 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016003 0.00000