PDB Short entry for 2VXE HEADER TRANSCRIPTION 03-JUL-08 2VXE TITLE SOLUTION STRUCTURE OF THE LSM DOMAIN OF DROSOPHILA TITLE 2 MELANOGASTER TRAL (TRAILER HITCH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CG10686-PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LSM DOMAIN, RESIDUES 1-84; COMPND 5 SYNONYM: GH08269P, TRAL-TRAILER HITCH; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 CELL_LINE: S2 CELLS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM60 KEYWDS EDC3, CAR-1, P-BODIES, DECAPPING, MRNA DECAY, LSM PROTEINS, KEYWDS 2 TRANSLATIONAL REPRESSION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR F.TRITSCHLER,M.COLES,V.TRUFFAULT REVDAT 4 24-JUL-13 2VXE 1 SOURCE REMARK VERSN DBREF REVDAT 4 2 SEQADV SCALE1 SCALE2 REVDAT 3 24-FEB-09 2VXE 1 VERSN REVDAT 2 28-OCT-08 2VXE 1 JRNL REVDAT 1 16-SEP-08 2VXE 0 JRNL AUTH F.TRITSCHLER,A.EULALIO,S.HELMS,S.SCHMIDT,M.COLES, JRNL AUTH 2 O.WEICHENRIEDER,E.IZAURRALDE,V.TRUFFAULT JRNL TITL SIMILAR MODES OF INTERACTION ENABLE TRAILER HITCH JRNL TITL 2 AND EDC3 TO ASSOCIATE WITH DCP1 AND ME31B IN JRNL TITL 3 DISTINCT PROTEIN COMPLEXES. JRNL REF MOL.CELL.BIOL. V. 28 6695 2008 JRNL REFN ISSN 0270-7306 JRNL PMID 18765641 JRNL DOI 10.1128/MCB.00759-08 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.9.4 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE PUBLICATION REMARK 4 REMARK 4 2VXE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-08. REMARK 100 THE PDBE ID CODE IS EBI-36778. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 150 MM REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 1X PBS, 1 MM DTT, PH7.2, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCACO, HNCO, HNCACB, REMARK 210 CBCACONH, HNHA, HNHB, CCH- REMARK 210 COSY, CCH-TOCSY, HNH-NOESY, REMARK 210 NNH-NOESY, CNH-NOESY, HCH- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : XPLOR REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : MINIMUM ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 NMR SPECTROSCOPY ON 15N, AND 13C, 15N-LABELED DROSOPHILA REMARK 210 MELANOGASTER TRAL LSM DOMAIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 40 84.08 45.65 REMARK 500 1 ASP A 50 174.02 -59.74 REMARK 500 2 SER A 40 84.08 45.65 REMARK 500 2 ASP A 50 174.02 -59.74 REMARK 500 3 LEU A 5 87.80 -155.43 REMARK 500 3 SER A 40 85.01 45.65 REMARK 500 3 ASP A 50 174.06 -58.63 REMARK 500 4 SER A 40 87.43 46.10 REMARK 500 5 SER A 40 86.71 45.98 REMARK 500 5 ASN A 80 -46.47 -132.40 REMARK 500 6 SER A 40 87.34 44.94 REMARK 500 6 ASP A 50 174.04 -58.76 REMARK 500 7 SER A 40 83.46 45.58 REMARK 500 7 ASP A 50 174.06 -57.67 REMARK 500 8 SER A 40 85.47 45.92 REMARK 500 8 ASP A 50 171.98 -58.15 REMARK 500 8 ASN A 79 -60.06 -125.42 REMARK 500 9 GLU A 7 96.05 -64.91 REMARK 500 9 SER A 40 85.90 45.75 REMARK 500 10 ALA A 0 -59.78 -140.10 REMARK 500 10 SER A 40 84.79 45.50 REMARK 500 11 SER A 40 84.00 45.58 REMARK 500 11 ASP A 50 172.15 -54.63 REMARK 500 12 SER A 40 87.05 45.93 REMARK 500 13 ALA A 0 -47.10 -154.98 REMARK 500 13 SER A 40 83.71 45.63 REMARK 500 13 ASP A 50 174.08 -58.22 REMARK 500 14 ALA A 0 32.74 -154.66 REMARK 500 14 SER A 40 83.62 45.65 REMARK 500 14 ASP A 50 170.02 -57.42 REMARK 500 15 SER A 40 84.94 45.55 REMARK 500 15 ASP A 50 157.78 -49.82 REMARK 500 16 SER A 40 84.38 45.65 REMARK 500 16 ASP A 50 174.07 -58.32 REMARK 500 16 SER A 59 30.29 -98.98 REMARK 500 17 MET A -1 72.98 -106.94 REMARK 500 17 LEU A 5 68.00 -155.46 REMARK 500 17 SER A 40 84.05 45.80 REMARK 500 17 ASN A 79 38.38 -148.62 REMARK 500 18 SER A 40 84.29 45.79 REMARK 500 19 ALA A 0 30.11 -99.23 REMARK 500 19 SER A 40 85.17 45.94 REMARK 500 19 ASP A 50 172.91 -58.71 REMARK 500 20 ALA A 0 -60.04 -155.08 REMARK 500 20 LEU A 5 87.92 -155.41 REMARK 500 20 PRO A 6 95.86 -67.79 REMARK 500 20 SER A 40 86.43 45.81 REMARK 500 21 MET A 1 36.65 -146.32 REMARK 500 21 SER A 40 85.36 45.73 REMARK 500 21 ASP A 50 172.29 -58.91 REMARK 500 22 GLU A 7 98.26 -64.83 REMARK 500 22 SER A 40 83.66 45.63 REMARK 500 23 SER A 40 83.76 45.41 REMARK 500 23 ASN A 79 -41.75 -139.48 REMARK 500 24 MET A 1 -57.64 -147.71 REMARK 500 24 LEU A 5 58.16 -155.39 REMARK 500 24 SER A 40 84.69 45.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VXF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE LSM DOMAIN OF REMARK 900 DROSOPHILA MELANOGASTER TRAL (TRAILER HITCH) DBREF 2VXE A 1 84 UNP Q9VTZ0 Q9VTZ0_DROME 1 84 SEQADV 2VXE GLY A -3 UNP Q9VTZ0 EXPRESSION TAG SEQADV 2VXE ALA A -2 UNP Q9VTZ0 EXPRESSION TAG SEQADV 2VXE MET A -1 UNP Q9VTZ0 EXPRESSION TAG SEQADV 2VXE ALA A 0 UNP Q9VTZ0 EXPRESSION TAG SEQRES 1 A 88 GLY ALA MET ALA MET SER GLY GLY LEU PRO GLU LEU GLY SEQRES 2 A 88 SER LYS ILE SER LEU ILE SER LYS ALA ASP ILE ARG TYR SEQRES 3 A 88 GLU GLY ARG LEU TYR THR VAL ASP PRO GLN GLU CYS THR SEQRES 4 A 88 ILE ALA LEU SER SER VAL ARG SER PHE GLY THR GLU ASP SEQRES 5 A 88 ARG ASP THR GLN PHE GLN ILE ALA PRO GLN SER GLN ILE SEQRES 6 A 88 TYR ASP TYR ILE LEU PHE ARG GLY SER ASP ILE LYS ASP SEQRES 7 A 88 ILE ARG VAL VAL ASN ASN HIS THR LEU PRO SHEET 1 AA 5 TYR A 62 ARG A 68 0 SHEET 2 AA 5 THR A 35 SER A 43 -1 O ILE A 36 N PHE A 67 SHEET 3 AA 5 ILE A 20 ASP A 30 -1 O GLU A 23 N ARG A 42 SHEET 4 AA 5 LYS A 11 SER A 16 -1 O ILE A 12 N GLY A 24 SHEET 5 AA 5 ILE A 72 VAL A 77 -1 N LYS A 73 O ILE A 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000