PDB Short entry for 2W18 HEADER NUCLEAR PROTEIN 15-OCT-08 2W18 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL WD40 DOMAIN OF HUMAN TITLE 2 PALB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARTNER AND LOCALIZER OF BRCA2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WD40 DOMAIN, RESIDUES 835-1186; COMPND 5 SYNONYM: PALB2, FANCN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS FANCONI ANEMIA, HOMOLOGOUS RECOMINATION, POLYMORPHISM, KEYWDS 2 PHOSPHOPROTEIN, BETA-PROPELLER, WD40, FANC-N, NUCLEUS, WD KEYWDS 3 REPEAT, COILED COIL, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.W.OLIVER,L.H.PEARL REVDAT 2 27-OCT-09 2W18 1 JRNL REVDAT 1 28-JUL-09 2W18 0 JRNL AUTH A.W.OLIVER,S.SWIFT,C.J.LORD,A.ASHWORTH,L.H.PEARL JRNL TITL STRUCTURAL BASIS FOR RECRUITMENT OF BRCA2 BY PALB2 JRNL REF EMBO REP. V. 10 990 2009 JRNL REFN ISSN 1469-221X JRNL PMID 19609323 JRNL DOI 10.1038/EMBOR.2009.126 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.900 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.265 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.95 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.55 REMARK 3 NUMBER OF REFLECTIONS : 29655 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2109 REMARK 3 R VALUE (WORKING SET) : 0.2089 REMARK 3 FREE R VALUE : 0.2464 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.05 REMARK 3 FREE R VALUE TEST SET COUNT : 2742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2811 - 5.1555 0.93 2591 112 0.2022 0.2011 REMARK 3 2 5.1555 - 4.0927 0.97 2678 157 0.1555 0.1602 REMARK 3 3 4.0927 - 3.5756 0.98 2706 140 0.1728 0.2243 REMARK 3 4 3.5756 - 3.2487 0.98 2655 137 0.1761 0.2378 REMARK 3 5 3.2487 - 3.0159 0.98 2706 153 0.1980 0.2335 REMARK 3 6 3.0159 - 2.8381 0.98 2650 186 0.1995 0.2411 REMARK 3 7 2.8381 - 2.6960 0.97 2657 130 0.2186 0.2860 REMARK 3 8 2.6960 - 2.5786 0.97 2700 124 0.2165 0.3379 REMARK 3 9 2.5786 - 2.4794 0.97 2709 132 0.2177 0.2915 REMARK 3 10 2.4794 - 2.3938 0.97 2678 152 0.2258 0.2995 REMARK 3 11 2.3938 - 2.3190 0.97 2690 126 0.2344 0.2661 REMARK 3 12 2.3190 - 2.2527 0.97 2646 119 0.2325 0.2625 REMARK 3 13 2.2527 - 2.1934 0.97 2687 150 0.2372 0.3184 REMARK 3 14 2.1934 - 2.1399 0.97 2646 135 0.2433 0.3065 REMARK 3 15 2.1399 - 2.0912 0.97 2692 139 0.2763 0.2883 REMARK 3 16 2.0912 - 2.0467 0.96 2728 140 0.2931 0.3673 REMARK 3 17 2.0467 - 2.0058 0.96 2594 130 0.3032 0.3012 REMARK 3 18 2.0058 - 1.9679 0.86 2335 130 0.3095 0.3414 REMARK 3 19 1.9679 - 1.9328 0.74 2002 137 0.3105 0.3579 REMARK 3 20 1.9328 - 1.9000 0.65 1799 113 0.3225 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.369 REMARK 3 B_SOL : 58.510 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.29 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.6300 REMARK 3 B22 (A**2) : 6.7099 REMARK 3 B33 (A**2) : -3.0799 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 3.7163 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.01 2402 REMARK 3 ANGLE : 1.47 3268 REMARK 3 CHIRALITY : 0.10 390 REMARK 3 PLANARITY : 0.00 401 REMARK 3 DIHEDRAL : 16.68 826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W18 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-08. REMARK 100 THE PDBE ID CODE IS EBI-37778. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9340 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : HORIZONTALLY BENDED GE(220) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54291 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 49.27 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NONE REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 4.0 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.8 REMARK 200 R MERGE FOR SHELL (I) : 0.58 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 50 MM KH2PO4, REMARK 280 12-20% (W/V) PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.39000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 831 REMARK 465 PRO A 832 REMARK 465 HIS A 833 REMARK 465 MET A 834 REMARK 465 SER A 835 REMARK 465 VAL A 836 REMARK 465 GLU A 837 REMARK 465 GLN A 838 REMARK 465 THR A 839 REMARK 465 GLU A 840 REMARK 465 THR A 841 REMARK 465 ALA A 842 REMARK 465 GLU A 843 REMARK 465 LEU A 844 REMARK 465 PRO A 845 REMARK 465 ALA A 846 REMARK 465 SER A 847 REMARK 465 ASP A 848 REMARK 465 SER A 849 REMARK 465 ILE A 850 REMARK 465 ASN A 851 REMARK 465 PRO A 852 REMARK 465 GLY A 853 REMARK 465 ARG A 879 REMARK 465 ALA A 880 REMARK 465 GLY A 881 REMARK 465 CYS A 882 REMARK 465 SER A 950 REMARK 465 SER A 951 REMARK 465 ASP A 952 REMARK 465 ASP A 953 REMARK 465 GLU A 954 REMARK 465 SER A 955 REMARK 465 SER A 1054 REMARK 465 TYR A 1055 REMARK 465 GLN A 1056 REMARK 465 HIS A 1076 REMARK 465 PRO A 1077 REMARK 465 CYS A 1078 REMARK 465 ALA A 1079 REMARK 465 LYS A 1080 REMARK 465 GLU A 1081 REMARK 465 SER A 1082 REMARK 465 GLU A 1083 REMARK 465 SER A 1084 REMARK 465 LEU A 1085 REMARK 465 ARG A 1086 REMARK 465 SER A 1087 REMARK 465 SER A 1155 REMARK 465 ASP A 1156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 854 CG OD1 ND2 REMARK 470 GLN A 856 CG CD OE1 NE2 REMARK 470 LYS A 862 CG CD CE NZ REMARK 470 LYS A 883 CG CD CE NZ REMARK 470 LYS A 899 CD CE NZ REMARK 470 GLU A 916 CG CD OE1 OE2 REMARK 470 CYS A 949 SG REMARK 470 GLU A 956 CG CD OE1 OE2 REMARK 470 LYS A 957 CG CD CE NZ REMARK 470 LYS A 974 CE NZ REMARK 470 ARG A 975 CZ NH1 NH2 REMARK 470 GLU A 996 CG CD OE1 OE2 REMARK 470 GLN A1023 CG CD OE1 NE2 REMARK 470 LYS A1047 CE NZ REMARK 470 LYS A1098 CD CE NZ REMARK 470 ARG A1117 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1157 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3153 - O HOH A 3155 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 878 C LYS A 883 N 3.352 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 878 CA - C - N ANGL. DEV. = -53.5 DEGREES REMARK 500 GLU A 878 O - C - N ANGL. DEV. = 24.0 DEGREES REMARK 500 LYS A 883 C - N - CA ANGL. DEV. = -39.1 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 916 -93.80 89.47 REMARK 500 LEU A 939 -52.96 -163.05 REMARK 500 ALA A 968 148.78 -170.68 REMARK 500 THR A 973 150.28 -48.45 REMARK 500 THR A 983 -35.55 -131.27 REMARK 500 LEU A 984 -109.25 -138.16 REMARK 500 ASP A1052 113.67 -39.11 REMARK 500 SER A1058 -102.64 120.11 REMARK 500 LYS A1062 141.88 -176.80 REMARK 500 VAL A1105 -4.84 -141.34 REMARK 500 LEU A1119 -51.56 -120.67 REMARK 500 ASP A1125 -119.01 57.80 REMARK 500 ALA A1149 142.12 -178.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 878 LYS A 883 -47.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 878 -17.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A1073 24.5 L L OUTSIDE RANGE REMARK 500 VAL A1123 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2187 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2189 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2190 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A2191 DBREF 2W18 A 831 834 PDB 2W18 2W18 831 834 DBREF 2W18 A 835 1186 UNP Q86YC2 PALB2_HUMAN 835 1186 SEQRES 1 A 356 GLY PRO HIS MET SER VAL GLU GLN THR GLU THR ALA GLU SEQRES 2 A 356 LEU PRO ALA SER ASP SER ILE ASN PRO GLY ASN LEU GLN SEQRES 3 A 356 LEU VAL SER GLU LEU LYS ASN PRO SER GLY SER CYS SER SEQRES 4 A 356 VAL ASP VAL SER ALA MET PHE TRP GLU ARG ALA GLY CYS SEQRES 5 A 356 LYS GLU PRO CYS ILE ILE THR ALA CYS GLU ASP VAL VAL SEQRES 6 A 356 SER LEU TRP LYS ALA LEU ASP ALA TRP GLN TRP GLU LYS SEQRES 7 A 356 LEU TYR THR TRP HIS PHE ALA GLU VAL PRO VAL LEU GLN SEQRES 8 A 356 ILE VAL PRO VAL PRO ASP VAL TYR ASN LEU VAL CYS VAL SEQRES 9 A 356 ALA LEU GLY ASN LEU GLU ILE ARG GLU ILE ARG ALA LEU SEQRES 10 A 356 PHE CYS SER SER ASP ASP GLU SER GLU LYS GLN VAL LEU SEQRES 11 A 356 LEU LYS SER GLY ASN ILE LYS ALA VAL LEU GLY LEU THR SEQRES 12 A 356 LYS ARG ARG LEU VAL SER SER SER GLY THR LEU SER ASP SEQRES 13 A 356 GLN GLN VAL GLU VAL MET THR PHE ALA GLU ASP GLY GLY SEQRES 14 A 356 GLY LYS GLU ASN GLN PHE LEU MET PRO PRO GLU GLU THR SEQRES 15 A 356 ILE LEU THR PHE ALA GLU VAL GLN GLY MET GLN GLU ALA SEQRES 16 A 356 LEU LEU GLY THR THR ILE MET ASN ASN ILE VAL ILE TRP SEQRES 17 A 356 ASN LEU LYS THR GLY GLN LEU LEU LYS LYS MET HIS ILE SEQRES 18 A 356 ASP ASP SER TYR GLN ALA SER VAL CYS HIS LYS ALA TYR SEQRES 19 A 356 SER GLU MET GLY LEU LEU PHE ILE VAL LEU SER HIS PRO SEQRES 20 A 356 CYS ALA LYS GLU SER GLU SER LEU ARG SER PRO VAL PHE SEQRES 21 A 356 GLN LEU ILE VAL ILE ASN PRO LYS THR THR LEU SER VAL SEQRES 22 A 356 GLY VAL MET LEU TYR CYS LEU PRO PRO GLY GLN ALA GLY SEQRES 23 A 356 ARG PHE LEU GLU GLY ASP VAL LYS ASP HIS CYS ALA ALA SEQRES 24 A 356 ALA ILE LEU THR SER GLY THR ILE ALA ILE TRP ASP LEU SEQRES 25 A 356 LEU LEU GLY GLN CYS THR ALA LEU LEU PRO PRO VAL SER SEQRES 26 A 356 ASP GLN HIS TRP SER PHE VAL LYS TRP SER GLY THR ASP SEQRES 27 A 356 SER HIS LEU LEU ALA GLY GLN LYS ASP GLY ASN ILE PHE SEQRES 28 A 356 VAL TYR HIS TYR SER HET GOL A2187 6 HET GOL A2188 6 HET GOL A2189 6 HET GOL A2190 6 HET GOL A2191 6 HETNAM GOL GLYCEROL FORMUL 2 GOL 5(C3 H8 O3) FORMUL 3 HOH *187(H2 O1) SHEET 1 AA 4 LEU A 855 LEU A 861 0 SHEET 2 AA 4 ILE A1180 TYR A1185 -1 O ILE A1180 N LEU A 861 SHEET 3 AA 4 HIS A1170 GLY A1174 -1 O LEU A1171 N TYR A1183 SHEET 4 AA 4 PHE A1161 TRP A1164 -1 O PHE A1161 N GLY A1174 SHEET 1 AB 4 SER A 869 TRP A 877 0 SHEET 2 AB 4 GLU A 884 CYS A 891 -1 O GLU A 884 N TRP A 877 SHEET 3 AB 4 VAL A 894 ALA A 900 -1 O VAL A 894 N CYS A 891 SHEET 4 AB 4 TRP A 906 HIS A 913 -1 O GLU A 907 N LYS A 899 SHEET 1 AC 7 VAL A 919 ILE A 922 0 SHEET 2 AC 7 VAL A 932 LEU A 936 -1 O ALA A 935 N LEU A 920 SHEET 3 AC 7 ILE A 941 LEU A 947 -1 N ARG A 942 O LEU A 936 SHEET 4 AC 7 GLN A 958 LEU A 972 -1 O VAL A 959 N ALA A 946 SHEET 5 AC 7 ARG A 976 SER A 981 -1 O ARG A 976 N LEU A 972 SHEET 6 AC 7 GLN A 988 PHE A 994 -1 O GLN A 988 N SER A 981 SHEET 7 AC 7 GLY A1000 LEU A1006 -1 N LYS A1001 O THR A 993 SHEET 1 AD 8 LEU A1045 HIS A1050 0 SHEET 2 AD 8 ASN A1034 ASN A1039 -1 O ILE A1035 N MET A1049 SHEET 3 AD 8 ALA A1025 THR A1030 -1 O LEU A1026 N TRP A1038 SHEET 4 AD 8 ILE A1013 GLN A1020 -1 N LEU A1014 O THR A1029 SHEET 5 AD 8 VAL A1059 GLU A1066 1 O ALA A1063 N GLN A1020 SHEET 6 AD 8 LEU A1069 SER A1075 -1 O LEU A1069 N GLU A1066 SHEET 7 AD 8 PHE A1090 ASN A1096 -1 O GLN A1091 N LEU A1074 SHEET 8 AD 8 LEU A1101 TYR A1108 -1 O LEU A1101 N ASN A1096 SHEET 1 AE 4 PHE A1118 LYS A1124 0 SHEET 2 AE 4 CYS A1127 LEU A1132 -1 O CYS A1127 N LYS A1124 SHEET 3 AE 4 ILE A1137 ASP A1141 -1 O ALA A1138 N ALA A1130 SHEET 4 AE 4 CYS A1147 LEU A1151 -1 N THR A1148 O ILE A1139 CISPEP 1 ALA A 1057 SER A 1058 0 4.21 CISPEP 2 ALA A 1115 GLY A 1116 0 -4.04 SITE 1 AC1 8 ALA A 874 CYS A 886 TRP A 906 SER A1165 SITE 2 AC1 8 THR A1167 ASP A1168 HIS A1170 HOH A3022 SITE 1 AC2 8 VAL A 969 THR A1015 PHE A1016 HOH A3090 SITE 2 AC2 8 HOH A3135 HOH A3180 HOH A3181 HOH A3182 SITE 1 AC3 6 GLN A 905 GLN A 988 PHE A1005 PRO A1008 SITE 2 AC3 6 HOH A3183 HOH A3184 SITE 1 AC4 5 LEU A 961 SER A 963 ASN A1003 HOH A3082 SITE 2 AC4 5 HOH A3186 SITE 1 AC5 6 LYS A1124 ASP A1125 TRP A1164 ASP A1168 SITE 2 AC5 6 SER A1169 HOH A3187 CRYST1 80.780 64.650 77.250 90.00 109.65 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012379 0.000000 0.004420 0.00000 SCALE2 0.000000 0.015468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013745 0.00000