PDB Short entry for 2W9B HEADER TRANSFERASE/DNA 22-JAN-09 2W9B TITLE BINARY COMPLEX OF DPO4 BOUND TO N2,N2-DIMETHYL- TITLE 2 DEOXYGUANOSINE MODIFIED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL IV, DPO4; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS COMPND 8 SOLFATARICUS; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA POLYMERASE IV; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: POL IV, DPO4; COMPND 13 EC: 2.7.7.7; COMPND 14 ENGINEERED: YES; COMPND 15 OTHER_DETAILS: Y-FAMILY DNA POLYMERASE FROM SULFOLOBUS COMPND 16 SOLFATARICUS; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP COMPND 19 *TP*TP*CP*DOCP)-3'; COMPND 20 CHAIN: C, D; COMPND 21 OTHER_DETAILS: 14 BASE PRIMER DNA 5'-GGG GGA AGG ATT COMPND 22 C(DOC) -3'; COMPND 23 MOL_ID: 4; COMPND 24 MOLECULE: 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP COMPND 25 *TP*TP*CP*CP*CP*CP*C)-3'; COMPND 26 CHAIN: E, F; COMPND 27 OTHER_DETAILS: 18 BASE TEMPLATE DNA 5'-TCA T(M2G)G AAT CCT COMPND 28 TCC CCC-3' SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2; SOURCE 5 ATCC: 35092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 12 ORGANISM_TAXID: 273057; SOURCE 13 STRAIN: P2; SOURCE 14 ATCC: 35092; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 MOL_ID: 4; SOURCE 22 SYNTHETIC: YES KEYWDS DNA-DIRECTED DNA POLYMERASE, N2-DIMETHYL-G, METAL-BINDING, KEYWDS 2 MUTATOR PROTEIN, DNA DAMAGE, DNA REPAIR, DNA-BINDING, KEYWDS 3 TRANSFERASE, DNA REPLICATION, NUCLEOTIDYLTRANSFERASE, KEYWDS 4 TRANSFERASE/DNA, DNA, DPO4, ADDUCT, CYTOPLASM, MAGNESIUM, KEYWDS 5 POLYMERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.EOFF,H.ZHANG,I.D.KOSEKOV,C.J.RIZZO,M.EGLI, AUTHOR 2 F.P.GUENGERICH REVDAT 2 30-JUN-09 2W9B 1 JRNL REMARK REVDAT 1 12-MAY-09 2W9B 0 JRNL AUTH H.ZHANG,R.L.EOFF,I.D.KOSEKOV,C.J.RIZZO,M.EGLI, JRNL AUTH 2 F.P.GUENGERICH JRNL TITL STRUCTURE-FUNCTION RELATIONSHIPS IN MISCODING BY JRNL TITL 2 SULFOLOBUS SOLFATARICUS DNA POLYMERASE DPO4: JRNL TITL 3 GUANINE N2,N2-DIMETHYL SUBSTITUTION PRODUCES JRNL TITL 4 INACTIVE AND MISCODING POLYMERASE COMPLEXES. JRNL REF J.BIOL.CHEM. V. 284 17687 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19542237 JRNL DOI 10.1074/JBC.M109014274 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 114169.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 44372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2231 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6507 REMARK 3 BIN R VALUE (WORKING SET) : 0.3300 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 354 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5500 REMARK 3 NUCLEIC ACID ATOMS : 1136 REMARK 3 HETEROGEN ATOMS : 124 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : -5.52000 REMARK 3 B33 (A**2) : 4.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.40 REMARK 3 LOW RESOLUTION CUTOFF (A) : 30.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.43 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.034 REMARK 3 BOND ANGLES (DEGREES) : 3.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.39 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.750 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.640 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.25 REMARK 3 BSOL : 56.70 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2W9B COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-09. REMARK 100 THE PDBE ID CODE IS EBI-38625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45625 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.28 REMARK 200 RESOLUTION RANGE LOW (A) : 28.75 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.10 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.8 REMARK 200 R MERGE FOR SHELL (I) : 0.26 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ASD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DPO4:DNA COMPLEX (1:1.2 MOLAR REMARK 280 RATIO, 150 MICROMOLAR), 20 MM TRIS HCL (PH 7.4), 15% REMARK 280 POLYETHYLENE GLYCOL 3350 (W/V), 60 MM SODIUM CHLORIDE, 5 REMARK 280 MM MAGNESIUM CHLORIDE, 1 MM DGTP. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.88800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 ALA B 343 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 465 DT E 1 REMARK 465 DC E 2 REMARK 465 DT F 1 REMARK 465 DC F 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 342 CA C O CB CG CD OE1 OE2 REMARK 470 GLU B 342 CA C O CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 133 - N LYS B 137 1.98 REMARK 500 O ASN B 257 - N GLU B 259 2.13 REMARK 500 O THR B 290 - O ASP B 292 2.00 REMARK 500 O HOH B 2027 - O HOH B 2045 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 79 CG GLU A 79 CD 0.097 REMARK 500 VAL A 80 CB VAL A 80 CG2 0.130 REMARK 500 VAL A 84 CA VAL A 84 CB -0.127 REMARK 500 GLU A 106 CB GLU A 106 CG 0.162 REMARK 500 GLU A 106 CG GLU A 106 CD 0.122 REMARK 500 ALA A 155 CA ALA A 155 CB 0.153 REMARK 500 ALA A 220 CA ALA A 220 CB 0.163 REMARK 500 LYS A 221 CB LYS A 221 CG 0.165 REMARK 500 ASP A 277 CB ASP A 277 CG 0.130 REMARK 500 TYR B 12 CD2 TYR B 12 CE2 -0.149 REMARK 500 VAL B 15 CA VAL B 15 CB -0.127 REMARK 500 VAL B 30 CA VAL B 30 CB -0.133 REMARK 500 VAL B 43 CA VAL B 43 CB 0.130 REMARK 500 VAL B 43 CB VAL B 43 CG2 -0.132 REMARK 500 VAL B 55 CB VAL B 55 CG2 0.156 REMARK 500 GLU B 63 CG GLU B 63 CD 0.109 REMARK 500 VAL B 84 CB VAL B 84 CG2 0.154 REMARK 500 ILE B 88 CA ILE B 88 CB -0.151 REMARK 500 TYR B 122 CD2 TYR B 122 CE2 -0.141 REMARK 500 PHE B 150 CB PHE B 150 CG -0.106 REMARK 500 GLU B 169 CG GLU B 169 CD 0.103 REMARK 500 GLU B 170 CB GLU B 170 CG 0.138 REMARK 500 DG C 1 C5 DG C 1 C6 -0.062 REMARK 500 DG C 3 C2 DG C 3 N2 -0.061 REMARK 500 DG C 3 N7 DG C 3 C5 0.038 REMARK 500 DG C 5 C3' DG C 5 O3' -0.038 REMARK 500 DG C 5 N9 DG C 5 C4 0.061 REMARK 500 DA C 7 C5 DA C 7 C6 0.066 REMARK 500 DG C 8 C5 DG C 8 C6 0.067 REMARK 500 DG C 8 C6 DG C 8 O6 -0.065 REMARK 500 DG C 8 N1 DG C 8 C2 -0.062 REMARK 500 DA C 10 N3 DA C 10 C4 0.036 REMARK 500 DT C 11 C1' DT C 11 N1 0.138 REMARK 500 DT C 11 C1' DT C 11 N1 0.088 REMARK 500 DT C 11 C4 DT C 11 O4 0.065 REMARK 500 DT C 12 C4 DT C 12 O4 -0.070 REMARK 500 DT C 12 C5 DT C 12 C6 -0.057 REMARK 500 DG D 2 C6 DG D 2 N1 0.049 REMARK 500 DG D 3 N1 DG D 3 C2 0.049 REMARK 500 DG D 4 N9 DG D 4 C4 0.051 REMARK 500 DG D 8 C2 DG D 8 N3 0.058 REMARK 500 DT D 11 C2 DT D 11 O2 -0.058 REMARK 500 DT D 11 C5 DT D 11 C7 -0.043 REMARK 500 DT D 12 C2 DT D 12 O2 -0.058 REMARK 500 DC D 13 N1 DC D 13 C2 0.068 REMARK 500 DT E 4 P DT E 4 OP2 0.151 REMARK 500 DG E 6 C5 DG E 6 C6 -0.064 REMARK 500 DC E 10 C2 DC E 10 O2 0.055 REMARK 500 DC E 11 C2 DC E 11 O2 -0.082 REMARK 500 DT E 13 N1 DT E 13 C6 -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 9 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 CYS A 31 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 ILE A 67 CG1 - CB - CG2 ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU A 68 CB - CG - CD1 ANGL. DEV. = -12.2 DEGREES REMARK 500 VAL A 84 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 LEU A 91 CA - CB - CG ANGL. DEV. = 19.1 DEGREES REMARK 500 GLY A 125 N - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 VAL A 142 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ILE A 189 CB - CA - C ANGL. DEV. = -12.2 DEGREES REMARK 500 LEU A 202 CB - CG - CD1 ANGL. DEV. = -13.5 DEGREES REMARK 500 LEU A 225 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 LEU A 225 CB - CG - CD2 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 PRO A 281 C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 298 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 7 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 7 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 PRO B 21 C - N - CA ANGL. DEV. = -13.4 DEGREES REMARK 500 VAL B 72 CB - CA - C ANGL. DEV. = -13.9 DEGREES REMARK 500 ILE B 88 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 LEU B 109 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 GLY B 125 N - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 LEU B 133 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 GLY B 143 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU B 178 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP B 182 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ILE B 186 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 LEU B 197 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 230 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO B 236 C - N - CA ANGL. DEV. = 12.5 DEGREES REMARK 500 ILE B 322 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 VAL B 335 CB - CA - C ANGL. DEV. = -11.4 DEGREES REMARK 500 ARG B 336 NE - CZ - NH1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 1 C4' - C3' - O3' ANGL. DEV. = -13.6 DEGREES REMARK 500 DG C 1 O4' - C1' - C2' ANGL. DEV. = -3.6 DEGREES REMARK 500 DG C 1 O4' - C1' - N9 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG C 2 C1' - O4' - C4' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG C 2 O4' - C1' - C2' ANGL. DEV. = -3.0 DEGREES REMARK 500 DG C 2 O3' - P - OP1 ANGL. DEV. = -8.4 DEGREES REMARK 500 DG C 2 O3' - P - OP2 ANGL. DEV. = -8.4 DEGREES REMARK 500 DG C 3 C5' - C4' - C3' ANGL. DEV. = -7.7 DEGREES REMARK 500 DG C 3 O4' - C1' - C2' ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 6.8 DEGREES REMARK 500 DG C 5 C5' - C4' - C3' ANGL. DEV. = -7.8 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 10.8 DEGREES REMARK 500 DG C 5 O5' - P - OP2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 202 ANGLE DEVIATIONS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 63.46 25.50 REMARK 500 PHE A 11 -93.06 -29.73 REMARK 500 TYR A 12 -42.10 -29.09 REMARK 500 ARG A 36 -94.97 -13.31 REMARK 500 GLU A 38 125.95 -35.87 REMARK 500 ARG A 93 -4.99 -56.40 REMARK 500 GLU A 94 26.43 -78.46 REMARK 500 TYR A 95 -52.17 -158.94 REMARK 500 ILE A 104 -38.53 -32.27 REMARK 500 ALA A 107 143.98 -170.56 REMARK 500 ALA A 121 -66.80 -125.81 REMARK 500 GLU A 127 -77.54 -35.96 REMARK 500 GLU A 136 -11.43 -166.51 REMARK 500 VAL A 140 -157.73 -133.28 REMARK 500 SER A 145 158.57 162.08 REMARK 500 LYS A 146 -30.52 -20.62 REMARK 500 LYS A 148 -76.40 -46.26 REMARK 500 LYS A 152 -35.73 -31.89 REMARK 500 LYS A 159 156.03 -47.24 REMARK 500 ASN A 161 35.54 32.80 REMARK 500 LYS A 172 -87.93 -65.19 REMARK 500 ARG A 173 -30.79 -14.41 REMARK 500 ILE A 175 -69.02 -28.22 REMARK 500 GLU A 177 -37.94 136.24 REMARK 500 ASP A 182 46.71 -108.32 REMARK 500 ALA A 191 -76.49 -44.00 REMARK 500 GLU A 192 -71.47 -22.28 REMARK 500 LYS A 193 -8.48 -54.35 REMARK 500 ASP A 204 8.50 -65.57 REMARK 500 SER A 207 -94.19 -76.36 REMARK 500 ILE A 208 132.72 -17.77 REMARK 500 GLU A 209 156.03 -46.19 REMARK 500 LYS A 214 -87.05 -38.32 REMARK 500 ILE A 217 -36.03 -139.50 REMARK 500 ALA A 220 -102.62 -13.24 REMARK 500 ALA A 222 -77.62 -35.16 REMARK 500 ASP A 231 -8.29 102.86 REMARK 500 GLU A 232 -97.81 -78.64 REMARK 500 TYR A 233 -83.50 65.85 REMARK 500 ASN A 234 91.90 39.69 REMARK 500 ILE A 237 70.92 -34.06 REMARK 500 ARG A 238 172.98 -42.64 REMARK 500 ARG A 240 143.08 73.71 REMARK 500 LEU A 265 -72.20 -56.19 REMARK 500 ASP A 277 113.41 17.19 REMARK 500 THR A 290 155.73 -31.82 REMARK 500 ARG A 298 100.09 -170.89 REMARK 500 PRO A 303 28.29 -72.55 REMARK 500 HIS A 304 -167.60 -172.07 REMARK 500 GLU A 324 -83.33 -128.31 REMARK 500 GLU A 325 8.50 -57.92 REMARK 500 GLU A 327 22.92 -163.88 REMARK 500 ARG A 328 -113.56 -67.13 REMARK 500 ARG A 331 -88.98 -92.94 REMARK 500 TYR B 10 50.14 25.92 REMARK 500 ASN B 20 75.71 -168.64 REMARK 500 SER B 22 36.35 -69.97 REMARK 500 LEU B 23 -35.91 -153.79 REMARK 500 PHE B 37 -157.00 -133.32 REMARK 500 ASP B 39 62.15 76.34 REMARK 500 ALA B 42 -159.85 -122.38 REMARK 500 GLU B 49 3.36 -65.81 REMARK 500 LYS B 52 28.60 -68.57 REMARK 500 ILE B 67 -67.83 -143.79 REMARK 500 LEU B 68 64.04 -101.96 REMARK 500 TYR B 95 -41.15 -130.38 REMARK 500 LYS B 98 79.63 -67.16 REMARK 500 ILE B 104 -32.31 -39.71 REMARK 500 ILE B 111 46.99 -90.23 REMARK 500 SER B 112 -72.25 -69.06 REMARK 500 VAL B 115 101.62 69.91 REMARK 500 ASP B 117 151.16 170.76 REMARK 500 ARG B 119 -70.14 -55.19 REMARK 500 LEU B 133 -70.97 -51.80 REMARK 500 GLU B 134 -78.77 -43.32 REMARK 500 LYS B 135 -10.05 -46.62 REMARK 500 GLU B 136 -0.15 -157.30 REMARK 500 SER B 145 -148.30 -177.73 REMARK 500 ALA B 154 -68.92 -26.61 REMARK 500 ASN B 161 30.72 76.68 REMARK 500 ASP B 167 170.75 -50.00 REMARK 500 GLU B 170 -15.53 -49.94 REMARK 500 ASP B 179 -131.87 -56.32 REMARK 500 ILE B 180 -45.65 -164.87 REMARK 500 LYS B 193 1.58 -58.61 REMARK 500 LEU B 202 26.75 -72.82 REMARK 500 ASP B 204 -29.40 -24.45 REMARK 500 PHE B 210 35.04 -74.03 REMARK 500 LEU B 213 -81.62 -43.01 REMARK 500 LYS B 214 -71.16 -28.83 REMARK 500 ILE B 217 -19.52 -140.87 REMARK 500 ALA B 222 -74.77 -63.26 REMARK 500 LYS B 223 -38.43 -36.45 REMARK 500 ASN B 234 125.66 -0.83 REMARK 500 GLU B 235 122.01 -171.68 REMARK 500 ARG B 240 127.31 49.32 REMARK 500 ARG B 247 47.37 -171.60 REMARK 500 MET B 251 -116.52 -74.23 REMARK 500 LYS B 252 -92.94 -159.67 REMARK 500 ASN B 254 107.31 -57.09 REMARK 500 SER B 255 -152.38 -149.47 REMARK 500 GLU B 260 -5.62 -50.39 REMARK 500 GLU B 291 -61.64 -7.07 REMARK 500 LEU B 293 140.10 -30.58 REMARK 500 ASP B 294 131.16 155.54 REMARK 500 VAL B 296 123.52 -177.91 REMARK 500 HIS B 304 -146.84 -112.20 REMARK 500 LYS B 308 -35.70 -38.60 REMARK 500 LYS B 321 -10.28 -32.67 REMARK 500 SER B 338 -137.99 -161.58 REMARK 500 LYS B 339 40.27 37.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG B 238 THR B 239 -140.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 119 0.65 SIDE CHAIN REMARK 500 ASP A 179 0.28 SIDE CHAIN REMARK 500 ARG B 328 0.60 SIDE CHAIN REMARK 500 DA E 3 0.40 SIDE CHAIN REMARK 500 DT E 4 0.38 SIDE CHAIN REMARK 500 DA F 3 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 2 24.9 L L OUTSIDE RANGE REMARK 500 VAL A 115 23.7 L L OUTSIDE RANGE REMARK 500 ASP A 117 22.9 L L OUTSIDE RANGE REMARK 500 LYS A 129 21.4 L L OUTSIDE RANGE REMARK 500 SER A 145 22.8 L L OUTSIDE RANGE REMARK 500 ILE A 163 24.1 L L OUTSIDE RANGE REMARK 500 VAL A 165 22.1 L L OUTSIDE RANGE REMARK 500 ILE A 166 23.2 L L OUTSIDE RANGE REMARK 500 LEU A 194 24.5 L L OUTSIDE RANGE REMARK 500 LYS A 201 24.6 L L OUTSIDE RANGE REMARK 500 LYS A 262 24.9 L L OUTSIDE RANGE REMARK 500 THR B 45 22.7 L L OUTSIDE RANGE REMARK 500 GLU B 209 24.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 DOC C 14 REMARK 615 DOC D 14 REMARK 615 O2G F 5 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1342 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 8 O REMARK 620 2 ASP A 105 OD2 102.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1343 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2058 O REMARK 620 2 ALA A 181 O 100.3 REMARK 620 3 ILE A 186 O 111.8 71.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1342 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2016 O REMARK 620 2 ASP B 7 OD2 97.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1343 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 186 O REMARK 620 2 DC D 13 OP2 78.1 REMARK 620 3 ALA B 181 O 80.4 153.2 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASL RELATED DB: PDB REMARK 900 OXOG-MODIFIED POSTINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S0M RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A BENZO[A]PYRENE DIOL REMARK 900 EPOXIDE ADDUCTIN A TERNARY COMPLEX WITH A REMARK 900 DNA POLYMERASE REMARK 900 RELATED ID: 2JEG RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 1RYS RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 2V4S RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- REMARK 900 NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION REMARK 900 RELATED ID: 2J6T RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DATP. REMARK 900 RELATED ID: 1N56 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX REMARK 900 WITH DNA CONTAININGABASIC LESION REMARK 900 RELATED ID: 2ATL RELATED DB: PDB REMARK 900 UNMODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JX4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA REMARK 900 POLYMERASE IN A TERNARYCOMPLEX WITH DNA REMARK 900 SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 2C22 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2VA2 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 1S97 RELATED DB: PDB REMARK 900 DPO4 WITH GT MISMATCH REMARK 900 RELATED ID: 2AGQ RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2AGO RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2JEJ RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 2W9C RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- REMARK 900 DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH REMARK 900 INCOMING DTTP REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2W9A RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF DPO4 BOUND TO N2,N2- REMARK 900 DIMETHYL-DEOXYGUANOSINE MODIFIED DNA WITH REMARK 900 INCOMING DGTP REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 1JXL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A Y-FAMILY DNA REMARK 900 POLYMERASE IN A TERNARYCOMPLEX WITH DNA REMARK 900 SUBSTRATES AND AN INCOMING NUCLEOTIDE REMARK 900 RELATED ID: 1N48 RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 IN COMPLEX REMARK 900 WITH DNA CONTAININGABASIC LESION REMARK 900 RELATED ID: 2BQ3 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2UVU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2J6U RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DGTP. REMARK 900 RELATED ID: 2AGP RELATED DB: PDB REMARK 900 FIDELITY OF DPO4: EFFECT OF METAL IONS, REMARK 900 NUCLEOTIDESELECTION AND PYROPHOSPHOROLYSIS REMARK 900 RELATED ID: 2C2R RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1S0N RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2W8L RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- REMARK 900 NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION REMARK 900 RELATED ID: 2JEF RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOTIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE AND X-RAY CRYSTALLOGRAPHY OF REMARK 900 CORRECT AND INCORRECT PAIRING REMARK 900 RELATED ID: 1S0O RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2UVW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2BQR RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2JEI RELATED DB: PDB REMARK 900 THE MOLECULAR BASIS OF SELECTIVITY OF REMARK 900 NUCLEOSIDE TRIPHOSPHATE INCORPORATION OPPOSITE REMARK 900 O6-BENZYLGUANINE BY SULFOLOBUS SOLFATARICUS REMARK 900 DNA POLYMERASE IV: STEADY-STATE AND PRE- REMARK 900 STEADY-STATE KINETICS AND X-RAY REMARK 900 CRYSTALLOGRAPHY OF CORRECT AND INCORRECT REMARK 900 PAIRING REMARK 900 RELATED ID: 2BQU RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 UNMODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 1S9F RELATED DB: PDB REMARK 900 DPO WITH AT MATCHED REMARK 900 RELATED ID: 2C28 RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2V9W RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2V4R RELATED DB: PDB REMARK 900 NON-PRODUCTIVE COMPLEX OF THE Y-FAMILY DNA REMARK 900 POLYMERASE DPO4 WITH DGTP SKIPPING THE REMARK 900 M1DG ADDUCT TO PAIR WITH THE NEXT TEMPLATE REMARK 900 CYTOSINE REMARK 900 RELATED ID: 2C2E RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 1RYR RELATED DB: PDB REMARK 900 REPLICATION OF A CIS-SYN THYMINE DIMER AT REMARK 900 ATOMIC RESOLUTION REMARK 900 RELATED ID: 2C2D RELATED DB: PDB REMARK 900 EFFICIENT AND HIGH FIDELITY INCORPORATION OF REMARK 900 DCTP OPPOSITE 7,8-DIHYDRO-8- REMARK 900 OXODEOXYGUANOSINE BY SULFOLOBUS SOLFATARICUS DNA REMARK 900 POLYMERASE DPO4 REMARK 900 RELATED ID: 2UVV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2V4Q RELATED DB: PDB REMARK 900 POST-INSERTION COMPLEX OF THE Y-FAMILY DNA REMARK 900 POLYMERASE DPO4 WITH M1DG CONTAINING REMARK 900 TEMPLATE DNA REMARK 900 RELATED ID: 2J6S RELATED DB: PDB REMARK 900 TERNARY COMPLEX OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 DNA POLYMERASE, O6-METHYLGUANINE MODIFIED REMARK 900 DNA, AND DATP. REMARK 900 RELATED ID: 2BR0 RELATED DB: PDB REMARK 900 DNA ADDUCT BYPASS POLYMERIZATION BY SULFOLOBUS REMARK 900 SOLFATARICUS DPO4. ANALYSIS AND CRYSTAL REMARK 900 STRUCTURES OF MULTIPLE BASE-PAIR SUBSTITUTION REMARK 900 AND FRAMESHIFT PRODUCTS WITH THE ADDUCT 1 REMARK 900 ,N2-ETHENOGUANINE REMARK 900 RELATED ID: 1S10 RELATED DB: PDB REMARK 900 SNAPSHOTS OF REPLICATION THROUGH AN ABASIC REMARK 900 LESION:STRUCTURAL BASIS FOR BASE SUBSTITUTION REMARK 900 AND FRAMESHIFT REMARK 900 RELATED ID: 2UVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF MUTANT DPO4 DNA REMARK 900 POLYMERASES WITH 8-OXOG CONTAINING DNA REMARK 900 TEMPLATE-PRIMER CONSTRUCTS REMARK 900 RELATED ID: 2VA3 RELATED DB: PDB REMARK 900 COMPLEX STRUCTURE OF SULFOLOBUS SOLFATARICUS REMARK 900 DPO4 AND DNA DUPLEX CONTAINING A HYDROPHOBIC REMARK 900 THYMINE ISOSTERE 2,4-DIFLUOROTOLUENE REMARK 900 NUCLEOTIDE IN THE TEMPLATE STRAND REMARK 900 RELATED ID: 2W8K RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- REMARK 900 NAPHTHYL-GUANINE ADDUCT IN SYN ORIENTATION REMARK 900 RELATED ID: 2V4T RELATED DB: PDB REMARK 900 Y-FAMILY DNA POLYMERASE DPO4 BYPASSING N2- REMARK 900 NAPHTHYL-GUANINE ADDUCT IN ANTI ORIENTATION REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED HEXA-HISTIDINE TAG AND LAST 11 RESIDUES ARE REMARK 999 DISORDERED DBREF 2W9B A -5 0 PDB 2W9B 2W9B -5 0 DBREF 2W9B A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2W9B B -5 0 PDB 2W9B 2W9B -5 0 DBREF 2W9B B 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2W9B C 1 14 PDB 2W9B 2W9B 1 14 DBREF 2W9B D 1 14 PDB 2W9B 2W9B 1 14 DBREF 2W9B E 1 18 PDB 2W9B 2W9B 1 18 DBREF 2W9B F 1 18 PDB 2W9B 2W9B 1 18 SEQADV 2W9B ARG A 223 UNP Q97W02 LYS 223 CONFLICT SEQRES 1 A 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 A 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 A 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 A 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 A 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 A 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 A 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 A 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 A 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 A 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 A 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 A 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 A 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 A 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 A 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 A 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 A 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 A 358 MET ILE GLY GLU ALA LYS ALA ARG TYR LEU ILE SER LEU SEQRES 19 A 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 A 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 A 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 A 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 A 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 A 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 A 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 A 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 A 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 A 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 358 HIS HIS HIS HIS HIS HIS MET ILE VAL LEU PHE VAL ASP SEQRES 2 B 358 PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL LEU ASN SEQRES 3 B 358 PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS VAL PHE SEQRES 4 B 358 SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA THR ALA SEQRES 5 B 358 ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA GLY ILE SEQRES 6 B 358 PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN ALA VAL SEQRES 7 B 358 TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN VAL SER SEQRES 8 B 358 SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER GLU LYS SEQRES 9 B 358 ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU ASP ILE SEQRES 10 B 358 SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR ASN LEU SEQRES 11 B 358 GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS GLU LYS SEQRES 12 B 358 ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS VAL PHE SEQRES 13 B 358 ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN GLY ILE SEQRES 14 B 358 LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU ILE ARG SEQRES 15 B 358 GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY ASN ILE SEQRES 16 B 358 THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN LYS LEU SEQRES 17 B 358 VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU LYS GLY SEQRES 18 B 358 MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SER LEU SEQRES 19 B 358 ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR ARG VAL SEQRES 20 B 358 ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS ARG ASN SEQRES 21 B 358 SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU PHE ARG SEQRES 22 B 358 ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS ARG ILE SEQRES 23 B 358 PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU ASP LEU SEQRES 24 B 358 ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS GLY ILE SEQRES 25 B 358 SER LYS GLU THR ALA TYR SER GLU SER VAL LYS LEU LEU SEQRES 26 B 358 GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE ARG ARG SEQRES 27 B 358 ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA ILE GLY SEQRES 28 B 358 LEU ASP LYS PHE PHE ASP THR SEQRES 1 C 14 DG DG DG DG DG DA DA DG DG DA DT DT DC SEQRES 2 C 14 DOC SEQRES 1 D 14 DG DG DG DG DG DA DA DG DG DA DT DT DC SEQRES 2 D 14 DOC SEQRES 1 E 18 DT DC DA DT O2G DG DA DA DT DC DC DT DT SEQRES 2 E 18 DC DC DC DC DC SEQRES 1 F 18 DT DC DA DT O2G DG DA DA DT DC DC DT DT SEQRES 2 F 18 DC DC DC DC DC MODRES 2W9B DOC C 14 DC 2,3-DIDEOXYCYTOSINE-MONOPHOSPHATE MODRES 2W9B DOC D 14 DC 2,3-DIDEOXYCYTOSINE-MONOPHOSPHATE MODRES 2W9B O2G E 5 DG MODIFIED GUANOSINE MODRES 2W9B O2G F 5 DG MODIFIED GUANOSINE HET MG A1342 1 HET MG A1343 1 HET MG B1342 1 HET MG B1343 1 HET DOC C 14 36 HET DOC D 14 36 HET O2G E 5 24 HET O2G F 5 24 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM O2G 2'-DEOXY-N,N-DIMETHYL-5'-O-[OXIDO(OXO) HETNAM 2 O2G PHOSPHONIO]GUANOSINE HETNAM MG MAGNESIUM ION FORMUL 7 DOC 2(C9 H14 N3 O6 P) FORMUL 8 O2G 2(C12 H18 N5 O7 P1) FORMUL 9 MG 4(MG 2+) FORMUL 10 HOH *203(H2 O1) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 ILE A 61 LYS A 66 1 6 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 TYR A 118 LYS A 135 1 18 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 GLU A 169 ARG A 176 1 8 HELIX 9 9 GLY A 187 LYS A 196 1 10 HELIX 10 10 LEU A 202 LEU A 206 5 5 HELIX 11 11 PHE A 210 GLY A 218 1 9 HELIX 12 12 GLY A 218 LEU A 228 1 11 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 LEU A 323 1 17 HELIX 15 15 TYR B 10 LEU B 19 1 10 HELIX 16 16 ASN B 47 LYS B 52 1 6 HELIX 17 17 PRO B 60 LYS B 65 1 6 HELIX 18 18 ARG B 77 ASN B 90 1 14 HELIX 19 19 ASP B 117 LYS B 135 1 19 HELIX 20 20 ASN B 147 LYS B 159 1 13 HELIX 21 21 ASP B 167 LEU B 178 1 12 HELIX 22 22 GLY B 187 LYS B 193 1 7 HELIX 23 23 ASP B 211 ARG B 230 1 20 HELIX 24 24 ILE B 261 ASP B 277 1 17 HELIX 25 25 SER B 307 GLU B 324 1 18 SHEET 1 AA 5 GLU A 100 SER A 103 0 SHEET 2 AA 5 GLU A 106 ASP A 110 -1 O GLU A 106 N SER A 103 SHEET 3 AA 5 VAL A 3 PHE A 8 -1 O LEU A 4 N LEU A 109 SHEET 4 AA 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 AA 5 ILE A 163 LYS A 164 1 O LYS A 164 N ILE A 144 SHEET 1 AB 3 GLY A 41 ALA A 46 0 SHEET 2 AB 3 VAL A 28 PHE A 33 -1 O VAL A 30 N ALA A 44 SHEET 3 AB 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 AC 4 ILE A 245 SER A 255 0 SHEET 2 AC 4 ILE A 330 SER A 338 -1 O ILE A 330 N SER A 255 SHEET 3 AC 4 ALA A 283 VAL A 289 -1 O ALA A 283 N SER A 338 SHEET 4 AC 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 BA 4 ILE B 99 SER B 103 0 SHEET 2 BA 4 GLU B 106 LEU B 109 -1 O GLU B 106 N SER B 103 SHEET 3 BA 4 VAL B 3 PHE B 8 -1 O LEU B 4 N LEU B 109 SHEET 4 BA 4 VAL B 140 SER B 145 -1 O THR B 141 N ASP B 7 SHEET 1 BB 3 GLY B 41 ALA B 46 0 SHEET 2 BB 3 VAL B 28 PHE B 33 -1 O VAL B 30 N THR B 45 SHEET 3 BB 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 BC 3 ILE B 245 GLY B 246 0 SHEET 2 BC 3 ILE B 330 PHE B 337 -1 O PHE B 337 N ILE B 245 SHEET 3 BC 3 VAL B 249 THR B 250 -1 O VAL B 249 N ILE B 333 SHEET 1 BD 4 ILE B 245 GLY B 246 0 SHEET 2 BD 4 ILE B 330 PHE B 337 -1 O PHE B 337 N ILE B 245 SHEET 3 BD 4 ALA B 283 THR B 290 -1 O HIS B 285 N ARG B 336 SHEET 4 BD 4 SER B 297 THR B 301 -1 O ARG B 298 N VAL B 286 LINK MG MG A1342 O PHE A 8 1555 1555 2.82 LINK MG MG A1342 OD2 ASP A 105 1555 1555 1.76 LINK MG MG A1343 O HOH A2058 1555 1555 2.30 LINK MG MG A1343 O ALA A 181 1555 1555 2.79 LINK MG MG A1343 O ILE A 186 1555 1555 2.55 LINK MG MG B1342 O HOH D2016 1555 1555 2.74 LINK MG MG B1342 OD2 ASP B 7 1555 1555 2.29 LINK MG MG B1343 O ALA B 181 1555 1555 2.66 LINK MG MG B1343 OP2 DC D 13 1555 1555 2.90 LINK MG MG B1343 O ILE B 186 1555 1555 2.64 LINK O3' DC C 13 P BDOC C 14 1555 1555 1.44 LINK O3' DC C 13 P ADOC C 14 1555 1555 1.59 LINK O3' DC D 13 P BDOC D 14 1555 1555 1.62 LINK O3' DC D 13 P ADOC D 14 1555 1555 1.62 LINK O3' DT E 4 P EO2G E 5 1555 1555 1.60 LINK O3'EO2G E 5 P DG E 6 1555 1555 1.62 LINK O3'F DT F 4 P FO2G F 5 1555 1555 1.61 LINK O3'FO2G F 5 P DG F 6 1555 1555 1.57 CISPEP 1 LYS A 159 PRO A 160 0 0.16 CISPEP 2 LYS B 159 PRO B 160 0 -0.17 SITE 1 AC1 4 ASP A 7 PHE A 8 ASP A 105 HOH A2022 SITE 1 AC2 4 ALA A 181 ILE A 186 HOH A2058 DC C 13 SITE 1 AC3 6 ASP B 7 PHE B 8 ASP B 105 HOH B2011 SITE 2 AC3 6 HOH D2016 HOH D2018 SITE 1 AC4 4 ALA B 181 ILE B 186 HOH B2039 DC D 13 CRYST1 51.794 101.776 97.268 90.00 91.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019307 0.000000 0.000657 0.00000 SCALE2 0.000000 0.009825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010287 0.00000