PDB Short entry for 2WA2 HEADER TRANSFERASE 02-FEB-09 2WA2 TITLE STRUCTURE OF THE METHYLTRANSFERASE DOMAIN FROM MODOC VIRUS, A TITLE 2 FLAVIVIRUS WITH NO KNOWN VECTOR (NKV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS5 PROTEIN, RESIDUES 2477-2744; COMPND 5 SYNONYM: NS5 FROM MODOC VIRUS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MODOC VIRUS; SOURCE 3 ORGANISM_TAXID: 64300; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PCR T7 KEYWDS TRANSFERASE, S-ADENOSYL-L- METHIONINE, VIRION, MEMBRANE, FLAVIVIRUS, KEYWDS 2 MODOC VIRUS, N7-METHYLTRANSFERASE, 2'-O-METHYLTRANSFERASE, KEYWDS 3 TRANSMEMBRANE, ENVELOPE PROTEIN, METHYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.M.JANSSON,P.JOHANSSON,T.A.JONES REVDAT 2 13-DEC-23 2WA2 1 REMARK REVDAT 1 04-AUG-09 2WA2 0 JRNL AUTH A.M.JANSSON,E.JAKOBSSON,P.JOHANSSON,V.LANTEZ,B.COUTARD, JRNL AUTH 2 X.DE LAMBALLERIE,T.UNGE,T.A.JONES JRNL TITL STRUCTURE OF THE METHYLTRANSFERASE DOMAIN FROM THE MODOC JRNL TITL 2 VIRUS, A FLAVIVIRUS WITH NO KNOWN VECTOR. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 796 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19622863 JRNL DOI 10.1107/S0907444909017260 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 43257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3777 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3923 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5301 ; 1.384 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 481 ; 5.266 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;32.795 ;23.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;14.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.833 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 587 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2907 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1882 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2672 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 337 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.183 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2469 ; 1.118 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3848 ; 1.581 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1692 ; 2.779 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 4.413 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1290038680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45634 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L9K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.26500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.00800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.12100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.00800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.26500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.12100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 2553 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 2563 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 2610 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 2678 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 2553 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 2563 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 2610 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ARG 2678 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 ILE A 2 REMARK 465 CYS A 3 REMARK 465 SER A 4 REMARK 465 VAL A 36 REMARK 465 ASP A 37 REMARK 465 ARG A 38 REMARK 465 ASN A 39 REMARK 465 GLU A 40 REMARK 465 ALA A 41 REMARK 465 ARG A 42 REMARK 465 GLU A 43 REMARK 465 ALA A 44 REMARK 465 LEU A 45 REMARK 465 ALA A 46 REMARK 465 LYS A 47 REMARK 465 GLY A 48 REMARK 465 LYS A 49 REMARK 465 THR A 50 REMARK 465 ASN A 51 REMARK 465 THR A 52 REMARK 465 GLY A 53 REMARK 465 HIS A 54 REMARK 465 ALA A 55 REMARK 465 GLU A 248 REMARK 465 GLN A 249 REMARK 465 GLY A 250 REMARK 465 GLY A 251 REMARK 465 GLU A 252 REMARK 465 ARG A 253 REMARK 465 VAL A 254 REMARK 465 VAL A 255 REMARK 465 PRO A 256 REMARK 465 ASP A 257 REMARK 465 TYR A 258 REMARK 465 LYS A 259 REMARK 465 PHE A 260 REMARK 465 SER A 261 REMARK 465 THR A 262 REMARK 465 GLY A 263 REMARK 465 THR A 264 REMARK 465 ARG A 265 REMARK 465 SER A 266 REMARK 465 ASN A 267 REMARK 465 LEU A 268 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 1 REMARK 465 ILE B 2 REMARK 465 CYS B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 ASN B 267 REMARK 465 LEU B 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2004 O HOH B 2005 1.34 REMARK 500 O GLU A 247 O HOH A 2114 1.97 REMARK 500 N THR B 8 O HOH B 2001 2.15 REMARK 500 O HOH B 2096 O HOH B 2123 2.16 REMARK 500 OG SER A 190 OD1 ASP A 192 2.16 REMARK 500 OG SER B 87 O SAM B 1267 2.19 REMARK 500 SD MET A 246 O HOH A 2008 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 69.34 -111.78 REMARK 500 SER B 109 125.90 -37.59 REMARK 500 ASN B 176 76.09 -107.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM B 1267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1249 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WA1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE METHYLTRANSFERASE DOMAIN FROM MODOC VIRUS, A REMARK 900 FLAVIVIRUS WITH NO KNOWN VECTOR (NKV) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE UNIPROT ACCESSION NUMBER REFERS TO THE WHOLE REMARK 999 POLYPROTEIN FROM THE MODOC VIRUS DBREF 2WA2 A -7 0 PDB 2WA2 2WA2 -7 0 DBREF 2WA2 A 1 268 UNP Q8QL64 Q8QL64_9FLAV 2477 2744 DBREF 2WA2 B -7 0 PDB 2WA2 2WA2 -7 0 DBREF 2WA2 B 1 268 UNP Q8QL64 Q8QL64_9FLAV 2477 2744 SEQADV 2WA2 THR A 77 UNP Q8QL64 SER 2553 ENGINEERED MUTATION SEQADV 2WA2 SER A 87 UNP Q8QL64 GLY 2563 ENGINEERED MUTATION SEQADV 2WA2 THR A 134 UNP Q8QL64 ARG 2610 ENGINEERED MUTATION SEQADV 2WA2 ALA A 202 UNP Q8QL64 ARG 2678 ENGINEERED MUTATION SEQADV 2WA2 THR B 77 UNP Q8QL64 SER 2553 ENGINEERED MUTATION SEQADV 2WA2 SER B 87 UNP Q8QL64 GLY 2563 ENGINEERED MUTATION SEQADV 2WA2 THR B 134 UNP Q8QL64 ARG 2610 ENGINEERED MUTATION SEQADV 2WA2 ALA B 202 UNP Q8QL64 ARG 2678 ENGINEERED MUTATION SEQRES 1 A 276 MET ALA HIS HIS HIS HIS HIS HIS GLY ILE CYS SER SER SEQRES 2 A 276 ALA PRO THR LEU GLY GLU ILE TRP LYS ARG LYS LEU ASN SEQRES 3 A 276 GLN LEU ASP ALA LYS GLU PHE MET ALA TYR ARG ARG ARG SEQRES 4 A 276 PHE VAL VAL GLU VAL ASP ARG ASN GLU ALA ARG GLU ALA SEQRES 5 A 276 LEU ALA LYS GLY LYS THR ASN THR GLY HIS ALA VAL SER SEQRES 6 A 276 ARG GLY THR ALA LYS LEU ALA TRP ILE ASP GLU ARG GLY SEQRES 7 A 276 GLY VAL GLU LEU LYS GLY THR VAL VAL ASP LEU GLY CYS SEQRES 8 A 276 GLY ARG GLY SER TRP SER TYR TYR ALA ALA SER GLN PRO SEQRES 9 A 276 ASN VAL ARG GLU VAL LYS ALA TYR THR LEU GLY THR SER SEQRES 10 A 276 GLY HIS GLU LYS PRO ARG LEU VAL GLU THR PHE GLY TRP SEQRES 11 A 276 ASN LEU ILE THR PHE LYS SER LYS VAL ASP VAL THR LYS SEQRES 12 A 276 MET GLU PRO PHE GLN ALA ASP THR VAL LEU CYS ASP ILE SEQRES 13 A 276 GLY GLU SER ASN PRO THR ALA ALA VAL GLU ALA SER ARG SEQRES 14 A 276 THR LEU THR VAL LEU ASN VAL ILE SER ARG TRP LEU GLU SEQRES 15 A 276 TYR ASN GLN GLY CYS GLY PHE CYS VAL LYS VAL LEU ASN SEQRES 16 A 276 PRO TYR SER CYS ASP VAL LEU GLU ALA LEU MET LYS MET SEQRES 17 A 276 GLN ALA ARG PHE GLY GLY GLY LEU ILE ARG VAL PRO LEU SEQRES 18 A 276 SER ARG ASN SER THR HIS GLU MET TYR PHE VAL SER GLY SEQRES 19 A 276 ILE LYS ASN ASN ILE MET GLY ASN VAL THR ALA VAL SER SEQRES 20 A 276 ARG GLN LEU LEU LYS ARG MET GLU GLU GLN GLY GLY GLU SEQRES 21 A 276 ARG VAL VAL PRO ASP TYR LYS PHE SER THR GLY THR ARG SEQRES 22 A 276 SER ASN LEU SEQRES 1 B 276 MET ALA HIS HIS HIS HIS HIS HIS GLY ILE CYS SER SER SEQRES 2 B 276 ALA PRO THR LEU GLY GLU ILE TRP LYS ARG LYS LEU ASN SEQRES 3 B 276 GLN LEU ASP ALA LYS GLU PHE MET ALA TYR ARG ARG ARG SEQRES 4 B 276 PHE VAL VAL GLU VAL ASP ARG ASN GLU ALA ARG GLU ALA SEQRES 5 B 276 LEU ALA LYS GLY LYS THR ASN THR GLY HIS ALA VAL SER SEQRES 6 B 276 ARG GLY THR ALA LYS LEU ALA TRP ILE ASP GLU ARG GLY SEQRES 7 B 276 GLY VAL GLU LEU LYS GLY THR VAL VAL ASP LEU GLY CYS SEQRES 8 B 276 GLY ARG GLY SER TRP SER TYR TYR ALA ALA SER GLN PRO SEQRES 9 B 276 ASN VAL ARG GLU VAL LYS ALA TYR THR LEU GLY THR SER SEQRES 10 B 276 GLY HIS GLU LYS PRO ARG LEU VAL GLU THR PHE GLY TRP SEQRES 11 B 276 ASN LEU ILE THR PHE LYS SER LYS VAL ASP VAL THR LYS SEQRES 12 B 276 MET GLU PRO PHE GLN ALA ASP THR VAL LEU CYS ASP ILE SEQRES 13 B 276 GLY GLU SER ASN PRO THR ALA ALA VAL GLU ALA SER ARG SEQRES 14 B 276 THR LEU THR VAL LEU ASN VAL ILE SER ARG TRP LEU GLU SEQRES 15 B 276 TYR ASN GLN GLY CYS GLY PHE CYS VAL LYS VAL LEU ASN SEQRES 16 B 276 PRO TYR SER CYS ASP VAL LEU GLU ALA LEU MET LYS MET SEQRES 17 B 276 GLN ALA ARG PHE GLY GLY GLY LEU ILE ARG VAL PRO LEU SEQRES 18 B 276 SER ARG ASN SER THR HIS GLU MET TYR PHE VAL SER GLY SEQRES 19 B 276 ILE LYS ASN ASN ILE MET GLY ASN VAL THR ALA VAL SER SEQRES 20 B 276 ARG GLN LEU LEU LYS ARG MET GLU GLU GLN GLY GLY GLU SEQRES 21 B 276 ARG VAL VAL PRO ASP TYR LYS PHE SER THR GLY THR ARG SEQRES 22 B 276 SER ASN LEU HET SAM A1248 27 HET SO4 A1249 5 HET SAM B1267 27 HET SO4 B1268 5 HET SO4 B1269 5 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SO4 SULFATE ION FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *298(H2 O) HELIX 1 1 SER A 5 GLN A 19 1 15 HELIX 2 2 ALA A 22 ARG A 30 1 9 HELIX 3 3 GLY A 59 ARG A 69 1 11 HELIX 4 4 SER A 87 SER A 94 1 8 HELIX 5 5 GLU A 158 TYR A 175 1 18 HELIX 6 6 SER A 190 ALA A 202 1 13 HELIX 7 7 ILE A 231 GLU A 247 1 17 HELIX 8 8 THR B 8 GLN B 19 1 12 HELIX 9 9 ALA B 22 ARG B 30 1 9 HELIX 10 10 ASN B 39 ALA B 46 1 8 HELIX 11 11 GLY B 59 ARG B 69 1 11 HELIX 12 12 SER B 87 SER B 94 1 8 HELIX 13 13 GLU B 158 TYR B 175 1 18 HELIX 14 14 SER B 190 ALA B 202 1 13 HELIX 15 15 ILE B 231 GLU B 247 1 17 SHEET 1 AA 7 LEU A 124 SER A 129 0 SHEET 2 AA 7 VAL A 98 THR A 105 1 O VAL A 101 N THR A 126 SHEET 3 AA 7 GLY A 76 GLY A 82 1 O GLY A 76 N ARG A 99 SHEET 4 AA 7 ASP A 142 GLY A 149 1 O THR A 143 N VAL A 79 SHEET 5 AA 7 CYS A 179 LEU A 186 1 O GLY A 180 N VAL A 144 SHEET 6 AA 7 GLU A 220 SER A 225 -1 O MET A 221 N VAL A 185 SHEET 7 AA 7 GLY A 207 ARG A 210 -1 O GLY A 207 N VAL A 224 SHEET 1 BA 2 VAL B 33 VAL B 36 0 SHEET 2 BA 2 ARG B 253 VAL B 255 1 O ARG B 253 N GLU B 35 SHEET 1 BB 7 LEU B 124 SER B 129 0 SHEET 2 BB 7 VAL B 98 THR B 105 1 O VAL B 101 N THR B 126 SHEET 3 BB 7 GLY B 76 GLY B 82 1 O GLY B 76 N ARG B 99 SHEET 4 BB 7 ASP B 142 GLY B 149 1 O THR B 143 N VAL B 79 SHEET 5 BB 7 CYS B 179 LEU B 186 1 O GLY B 180 N VAL B 144 SHEET 6 BB 7 GLU B 220 SER B 225 -1 O MET B 221 N VAL B 185 SHEET 7 BB 7 GLY B 207 ARG B 210 -1 O GLY B 207 N VAL B 224 SITE 1 AC1 21 GLY A 82 CYS A 83 GLY A 84 GLY A 86 SITE 2 AC1 21 SER A 87 TRP A 88 THR A 105 LEU A 106 SITE 3 AC1 21 HIS A 111 VAL A 131 ASP A 132 VAL A 133 SITE 4 AC1 21 THR A 134 ASP A 147 ILE A 148 SO4 A1249 SITE 5 AC1 21 HOH A2031 HOH A2033 HOH A2115 HOH A2116 SITE 6 AC1 21 HOH A2117 SITE 1 AC2 20 SER B 57 GLY B 59 GLY B 82 CYS B 83 SITE 2 AC2 20 GLY B 84 SER B 87 TRP B 88 THR B 105 SITE 3 AC2 20 LEU B 106 HIS B 111 VAL B 131 ASP B 132 SITE 4 AC2 20 VAL B 133 ASP B 147 ILE B 148 SO4 B1269 SITE 5 AC2 20 HOH B2056 HOH B2065 HOH B2177 HOH B2178 SITE 1 AC3 5 ARG B 38 ARG B 42 ARG B 85 HOH B2043 SITE 2 AC3 5 HOH B2179 SITE 1 AC4 6 ILE B 148 GLY B 149 GLU B 150 ARG B 161 SITE 2 AC4 6 SAM B1267 HOH B2180 SITE 1 AC5 6 ILE A 148 GLY A 149 GLU A 150 ARG A 161 SITE 2 AC5 6 SAM A1248 HOH A2118 CRYST1 52.530 62.242 160.016 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006249 0.00000