PDB Short entry for 2WCB HEADER METAL BINDING PROTEIN 10-MAR-09 2WCB TITLE S100A12 COMPLEX WITH ZINC IN THE ABSENCE OF CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-A12; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-92; COMPND 5 SYNONYM: S100 CALCIUM-BINDING PROTEIN A12, CALGRANULIN-C, CGRP, COMPND 6 NEUTROPHIL S100 PROTEIN, CALCIUM-BINDING PROTEIN IN AMNIOTIC FLUID 1, COMPND 7 P6, CAGC, CAAF1, S100A12, CALCITERMIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS CALCIUM SIGNALLING, HOST-PARASITE RESPONSE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.V.BLAGOVA,A.J.WILKINSON,K.S.WILSON,I.B.BRONSTEIN REVDAT 4 13-DEC-23 2WCB 1 REMARK LINK REVDAT 3 13-JUL-11 2WCB 1 VERSN REVDAT 2 11-AUG-09 2WCB 1 JRNL REVDAT 1 23-JUN-09 2WCB 0 JRNL AUTH O.V.MOROZ,E.V.BLAGOVA,A.J.WILKINSON,K.S.WILSON,I.B.BRONSTEIN JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN S100A12 IN APO FORM AND IN JRNL TITL 2 COMPLEX WITH ZINC: NEW INSIGHTS INTO S100A12 JRNL TITL 3 OLIGOMERISATION. JRNL REF J.MOL.BIOL. V. 391 536 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19501594 JRNL DOI 10.1016/J.JMB.2009.06.004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,G.N.MURSHUDOV,N.J.MAITLAND,G.G.DODSON, REMARK 1 AUTH 2 K.S.WILSON,I.SKIBSHOJ,E.M.LUKANIDIN,I.B.BRONSTEIN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 20 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11134923 REMARK 1 DOI 10.1107/S090744490001458X REMARK 1 REFERENCE 2 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,S.J.GRIST,N.J.MAITLAND,G.G.DODSON, REMARK 1 AUTH 2 K.S.WILSON,E.LUKANIDIN,I.B.BRONSTEIN REMARK 1 TITL STRUCTURE OF THE HUMAN S100A12-COPPER COMPLEX: IMPLICATIONS REMARK 1 TITL 2 FOR HOST-PARASITE DEFENCE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 859 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12777802 REMARK 1 DOI 10.1107/S0907444903004700 REMARK 1 REFERENCE 3 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,E.J.DODSON,H.J.BURRELL,S.J.GRIST, REMARK 1 AUTH 2 R.M.LLOYD,N.J.MAITLAND,G.G.DODSON,K.S.WILSON,E.LUKANIDIN, REMARK 1 AUTH 3 I.B.BRONSTEIN REMARK 1 TITL THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM AND ITS REMARK 1 TITL 2 PROPOSED ROLE IN RECEPTOR SIGNALLING. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 407 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11856825 REMARK 1 DOI 10.1107/S0907444901021278 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0082 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 26795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1429 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.04000 REMARK 3 B22 (A**2) : -2.50000 REMARK 3 B33 (A**2) : -3.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1545 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 994 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2095 ; 1.830 ; 1.927 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2453 ; 1.114 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 5.616 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.381 ;26.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;14.878 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;30.884 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 240 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1755 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 300 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 946 ; 0.965 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1526 ; 1.462 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 599 ; 2.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 569 ; 3.580 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8286 8.2351 9.4375 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.1646 REMARK 3 T33: 0.1281 T12: 0.0319 REMARK 3 T13: -0.0004 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.4550 L22: 6.7504 REMARK 3 L33: 6.5287 L12: -0.6300 REMARK 3 L13: -0.8817 L23: 5.4967 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.1729 S13: 0.1348 REMARK 3 S21: -0.6876 S22: 0.0403 S23: -0.1468 REMARK 3 S31: -0.0963 S32: 0.0966 S33: -0.2028 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 91 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8394 -3.2593 17.8777 REMARK 3 T TENSOR REMARK 3 T11: 0.3648 T22: 0.2255 REMARK 3 T33: 0.2760 T12: 0.0921 REMARK 3 T13: -0.0541 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2041 L22: 3.8808 REMARK 3 L33: 3.2050 L12: -0.0136 REMARK 3 L13: 0.2631 L23: 2.6856 REMARK 3 S TENSOR REMARK 3 S11: 0.1139 S12: -0.0615 S13: -0.2742 REMARK 3 S21: 0.4931 S22: 0.1198 S23: -0.3347 REMARK 3 S31: 0.9670 S32: 0.3335 S33: -0.2337 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 19 REMARK 3 ORIGIN FOR THE GROUP (A): 21.4430 13.8371 20.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.0973 REMARK 3 T33: 0.0608 T12: -0.0391 REMARK 3 T13: -0.0490 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.4089 L22: 10.2227 REMARK 3 L33: 8.6863 L12: -3.0515 REMARK 3 L13: -2.1538 L23: 8.2507 REMARK 3 S TENSOR REMARK 3 S11: 0.2859 S12: 0.2839 S13: -0.0807 REMARK 3 S21: 0.0739 S22: -0.0230 S23: -0.4023 REMARK 3 S31: -0.4234 S32: 0.3211 S33: -0.2629 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9333 12.5403 22.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.2528 REMARK 3 T33: 0.2682 T12: -0.0056 REMARK 3 T13: 0.0635 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.7307 L22: 2.1188 REMARK 3 L33: 7.4418 L12: 0.4197 REMARK 3 L13: 2.3013 L23: 2.4921 REMARK 3 S TENSOR REMARK 3 S11: 0.0282 S12: -0.1131 S13: -0.0947 REMARK 3 S21: 0.2958 S22: -0.2042 S23: 0.4709 REMARK 3 S31: 0.0928 S32: -0.7941 S33: 0.1760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 2WCB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.25 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28275 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 77.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1E8A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 34% PEG 3350, MME, 0.2M TRI AMMONIUM REMARK 280 CITRATE PH 7.0, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.77000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.77000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.77000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.77000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 77.77000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 77.77000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 77.77000 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 77.77000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 41.87150 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 41.84800 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 41.87150 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 MET B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLU B 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 LYS B 33 CD CE NZ REMARK 470 LYS B 48 CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 50 CG CD CE NZ REMARK 480 ASP B 54 CG OD1 OD2 REMARK 480 LYS B 90 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 49 O HOH B 2056 1.89 REMARK 500 OE2 GLU A 8 O HOH A 2013 2.06 REMARK 500 O LYS A 38 O HOH A 2045 2.13 REMARK 500 O ALA B 83 O HOH B 2082 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP B 54 CB ASP B 54 CG -0.251 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 52 CG1 - CB - CG2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ASP B 54 CB - CG - OD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 50 -1.11 -59.61 REMARK 500 ASP B 54 -37.10 -35.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2014 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 15 NE2 REMARK 620 2 ASP A 25 OD1 95.9 REMARK 620 3 HIS B 85 NE2 108.6 112.5 REMARK 620 4 HIS B 89 NE2 118.5 118.1 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 LYS A 21 O 110.3 REMARK 620 3 HIS A 23 O 86.7 87.9 REMARK 620 4 HIS A 23 O 87.0 88.9 1.2 REMARK 620 5 THR A 26 O 89.4 159.0 85.9 84.8 REMARK 620 6 HOH A2040 O 75.3 89.7 159.8 160.7 102.7 REMARK 620 7 HOH A2056 O 167.1 82.3 91.2 90.6 77.8 108.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 100 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 85 NE2 REMARK 620 2 HIS A 89 NE2 104.2 REMARK 620 3 HIS B 15 NE2 108.5 104.2 REMARK 620 4 ASP B 25 OD1 112.3 124.0 102.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 O REMARK 620 2 LYS B 21 O 100.9 REMARK 620 3 HIS B 23 O 87.8 89.0 REMARK 620 4 THR B 26 O 96.1 162.4 87.5 REMARK 620 5 HOH B2044 O 154.1 80.8 118.1 85.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1GQM RELATED DB: PDB REMARK 900 THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM AND ITS PROPOSED ROLE REMARK 900 IN RECEPTOR SIGNALLING REMARK 900 RELATED ID: 2WC8 RELATED DB: PDB REMARK 900 S100A12 COMPLEX WITH ZINC IN THE ABSENCE OF CALCIUM REMARK 900 RELATED ID: 2WCF RELATED DB: PDB REMARK 900 CALCIUM-FREE (APO) S100A12 REMARK 900 RELATED ID: 1ODB RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX REMARK 900 RELATED ID: 1E8A RELATED DB: PDB REMARK 900 THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12 REMARK 900 RELATED ID: 2WCE RELATED DB: PDB REMARK 900 CALCIUM-FREE S100A12 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA FOUR RESIDUES AT N TERMINUS MGGS DBREF 2WCB A 1 91 UNP P80511 S10AC_HUMAN 2 92 DBREF 2WCB B 1 91 UNP P80511 S10AC_HUMAN 2 92 SEQADV 2WCB MET A -3 UNP P80511 EXPRESSION TAG SEQADV 2WCB GLY A -2 UNP P80511 EXPRESSION TAG SEQADV 2WCB GLY A -1 UNP P80511 EXPRESSION TAG SEQADV 2WCB SER A 0 UNP P80511 EXPRESSION TAG SEQADV 2WCB MET B -3 UNP P80511 EXPRESSION TAG SEQADV 2WCB GLY B -2 UNP P80511 EXPRESSION TAG SEQADV 2WCB GLY B -1 UNP P80511 EXPRESSION TAG SEQADV 2WCB SER B 0 UNP P80511 EXPRESSION TAG SEQRES 1 A 95 MET GLY GLY SER THR LYS LEU GLU GLU HIS LEU GLU GLY SEQRES 2 A 95 ILE VAL ASN ILE PHE HIS GLN TYR SER VAL ARG LYS GLY SEQRES 3 A 95 HIS PHE ASP THR LEU SER LYS GLY GLU LEU LYS GLN LEU SEQRES 4 A 95 LEU THR LYS GLU LEU ALA ASN THR ILE LYS ASN ILE LYS SEQRES 5 A 95 ASP LYS ALA VAL ILE ASP GLU ILE PHE GLN GLY LEU ASP SEQRES 6 A 95 ALA ASN GLN ASP GLU GLN VAL ASP PHE GLN GLU PHE ILE SEQRES 7 A 95 SER LEU VAL ALA ILE ALA LEU LYS ALA ALA HIS TYR HIS SEQRES 8 A 95 THR HIS LYS GLU SEQRES 1 B 95 MET GLY GLY SER THR LYS LEU GLU GLU HIS LEU GLU GLY SEQRES 2 B 95 ILE VAL ASN ILE PHE HIS GLN TYR SER VAL ARG LYS GLY SEQRES 3 B 95 HIS PHE ASP THR LEU SER LYS GLY GLU LEU LYS GLN LEU SEQRES 4 B 95 LEU THR LYS GLU LEU ALA ASN THR ILE LYS ASN ILE LYS SEQRES 5 B 95 ASP LYS ALA VAL ILE ASP GLU ILE PHE GLN GLY LEU ASP SEQRES 6 B 95 ALA ASN GLN ASP GLU GLN VAL ASP PHE GLN GLU PHE ILE SEQRES 7 B 95 SER LEU VAL ALA ILE ALA LEU LYS ALA ALA HIS TYR HIS SEQRES 8 B 95 THR HIS LYS GLU HET ZN A 100 1 HET NA A 101 1 HET ZN B 100 1 HET NA B 101 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 NA 2(NA 1+) FORMUL 7 HOH *166(H2 O) HELIX 1 1 THR A 1 VAL A 19 1 19 HELIX 2 2 LYS A 29 LEU A 40 1 12 HELIX 3 3 LEU A 40 ILE A 47 1 8 HELIX 4 4 ASP A 49 GLN A 58 1 10 HELIX 5 5 PHE A 70 HIS A 89 1 20 HELIX 6 6 THR B 1 VAL B 19 1 19 HELIX 7 7 SER B 28 LEU B 40 1 13 HELIX 8 8 LEU B 40 ASN B 46 1 7 HELIX 9 9 ASP B 49 PHE B 57 1 9 HELIX 10 10 ASP B 69 HIS B 89 1 21 SHEET 1 AA 2 THR A 26 SER A 28 0 SHEET 2 AA 2 GLN A 67 ASP A 69 -1 O VAL A 68 N LEU A 27 LINK NE2 HIS A 15 ZN ZN A 100 1555 1555 2.08 LINK O SER A 18 NA NA A 101 1555 1555 2.15 LINK O LYS A 21 NA NA A 101 1555 1555 2.19 LINK O AHIS A 23 NA NA A 101 1555 1555 2.43 LINK O BHIS A 23 NA NA A 101 1555 1555 2.42 LINK OD1 ASP A 25 ZN ZN A 100 1555 1555 2.03 LINK O THR A 26 NA NA A 101 1555 1555 2.50 LINK NE2 HIS A 85 ZN ZN B 100 1555 1555 2.06 LINK NE2 HIS A 89 ZN ZN B 100 1555 1555 2.07 LINK ZN ZN A 100 NE2 HIS B 85 1555 1555 1.93 LINK ZN ZN A 100 NE2 HIS B 89 1555 1555 2.01 LINK NA NA A 101 O HOH A2040 1555 1555 2.44 LINK NA NA A 101 O HOH A2056 1555 1555 2.48 LINK NE2 HIS B 15 ZN ZN B 100 1555 1555 2.05 LINK O SER B 18 NA NA B 101 1555 1555 2.23 LINK O LYS B 21 NA NA B 101 1555 1555 2.29 LINK O HIS B 23 NA NA B 101 1555 1555 2.37 LINK OD1 ASP B 25 ZN ZN B 100 1555 1555 1.91 LINK O THR B 26 NA NA B 101 1555 1555 2.32 LINK NA NA B 101 O HOH B2044 1555 1555 2.42 SITE 1 AC1 4 HIS A 15 ASP A 25 HIS B 85 HIS B 89 SITE 1 AC2 6 SER A 18 LYS A 21 HIS A 23 THR A 26 SITE 2 AC2 6 HOH A2040 HOH A2056 SITE 1 AC3 4 HIS A 85 HIS A 89 HIS B 15 ASP B 25 SITE 1 AC4 6 SER B 18 LYS B 21 HIS B 23 THR B 26 SITE 2 AC4 6 HOH B2043 HOH B2044 CRYST1 83.696 83.743 155.540 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011948 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006429 0.00000