PDB Short entry for 2WEY HEADER HYDROLASE 02-APR-09 2WEY TITLE HUMAN PDE-PAPAVERINE COMPLEX OBTAINED BY LIGAND SOAKING OF CROSS- TITLE 2 LINKED PROTEIN CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3', 5'-CYCLIC COMPND 3 PHOSPHODIESTERASE; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 467-807; COMPND 6 SYNONYM: PHOSPHODIESTERASE 10A2, PDE10A; COMPND 7 EC: 3.1.4.17, 3.1.4.35; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ARCTICEXPRESS (STRATAGENE); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS METAL-BINDING, CROSS-LINKING, PHOSPHOPROTEIN, PHOSPHODIESTERASE, KEYWDS 2 ALLOSTERIC ENZYME, CGMP, CAMP, ZINC, HYDROLASE, CYTOPLASM, KEYWDS 3 MAGNESIUM, PAPAVERINE, POLYMORPHISM, CGMP-BINDING, CAMP-BINDING, KEYWDS 4 NUCLEOTIDE-BINDING, ALTERNATIVE SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ANDERSEN,D.L.SCHONFELD,I.TOOGOOD-JOHNSON,B.FELICETTI,C.ALBRECHT, AUTHOR 2 T.FRYATT,M.WHITTAKER,D.HALLETT,J.BARKER REVDAT 4 02-NOV-22 2WEY 1 REMARK DBREF HETSYN LINK REVDAT 3 05-JUL-17 2WEY 1 REMARK REVDAT 2 04-APR-12 2WEY 1 JRNL REMARK VERSN FORMUL REVDAT 1 28-JUL-09 2WEY 0 JRNL AUTH O.A.ANDERSEN,D.L.SCHONFELD,I.TOOGOOD-JOHNSON,B.FELICETTI, JRNL AUTH 2 C.ALBRECHT,T.FRYATT,M.WHITTAKER,D.HALLETT,J.BARKER JRNL TITL CROSS-LINKING OF PROTEIN CRYSTALS AS AN AID IN THE JRNL TITL 2 GENERATION OF BINARY PROTEIN-LIGAND CRYSTAL COMPLEXES, JRNL TITL 3 EXEMPLIFIED BY THE HUMAN PDE10A-PAPAVERINE STRUCTURE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 872 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19622871 JRNL DOI 10.1107/S0907444909017855 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1144 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5258 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.84000 REMARK 3 B22 (A**2) : -6.33000 REMARK 3 B33 (A**2) : -3.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.494 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.449 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.015 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5442 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7368 ; 1.049 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 4.748 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;37.272 ;24.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 960 ;16.765 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.012 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4098 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2791 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3798 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.096 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.195 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3339 ; 0.471 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5244 ; 0.860 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2462 ; 0.633 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2124 ; 1.032 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : VARIMAX MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15959 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 6.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69000 REMARK 200 R SYM FOR SHELL (I) : 0.69400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OUP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350, 60 MM BETA REMARK 280 -MERCAPTOETHANOL,0.1 M HEPES PH 7.25,0.2 M MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 771 REMARK 465 ALA A 772 REMARK 465 THR A 773 REMARK 465 TRP A 774 REMARK 465 ILE A 775 REMARK 465 SER A 776 REMARK 465 SER A 777 REMARK 465 PRO A 778 REMARK 465 SER A 779 REMARK 465 VAL A 780 REMARK 465 ALA A 781 REMARK 465 GLN A 782 REMARK 465 LYS A 783 REMARK 465 ALA A 784 REMARK 465 ALA A 785 REMARK 465 ALA A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 ASP A 789 REMARK 465 THR B 771 REMARK 465 ALA B 772 REMARK 465 THR B 773 REMARK 465 TRP B 774 REMARK 465 ILE B 775 REMARK 465 SER B 776 REMARK 465 SER B 777 REMARK 465 PRO B 778 REMARK 465 SER B 779 REMARK 465 VAL B 780 REMARK 465 ALA B 781 REMARK 465 GLN B 782 REMARK 465 LYS B 783 REMARK 465 ALA B 784 REMARK 465 ALA B 785 REMARK 465 ALA B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 ASP B 789 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 476 2.56 -57.12 REMARK 500 THR A 500 3.43 -68.88 REMARK 500 SER A 501 15.13 -140.34 REMARK 500 ARG A 521 57.29 -94.09 REMARK 500 TRP A 527 -37.15 -36.78 REMARK 500 ASP A 579 72.62 32.62 REMARK 500 SER A 589 58.08 39.31 REMARK 500 ASN A 609 85.51 -66.33 REMARK 500 CYS A 676 -15.40 -40.84 REMARK 500 PRO A 712 -39.50 -33.84 REMARK 500 ASP A 717 30.12 -78.76 REMARK 500 LYS A 718 29.08 -145.51 REMARK 500 PRO A 747 20.92 -68.80 REMARK 500 ARG A 767 21.92 -73.18 REMARK 500 PRO B 481 10.25 -61.32 REMARK 500 ARG B 521 51.16 -97.12 REMARK 500 TYR B 524 -68.64 -107.75 REMARK 500 HIS B 525 54.93 -65.26 REMARK 500 PHE B 578 105.62 -175.93 REMARK 500 ASP B 579 28.24 -152.92 REMARK 500 THR B 590 -76.15 -52.71 REMARK 500 SER B 660 0.48 -63.67 REMARK 500 CYS B 676 -12.33 -46.45 REMARK 500 MET B 714 39.53 -92.30 REMARK 500 LYS B 718 48.61 -92.04 REMARK 500 ASP B 720 26.42 -76.14 REMARK 500 GLU B 769 23.91 -149.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 1-[(3,4-DIMETHOXYPHENYL)METHYL]-6,7-DIMETHOXY-ISOQUINOLINE REMARK 600 (EV1): LIGAND BINDING TO MONOMER B REPRESENTS THE TRUE REMARK 600 MODE OF BINDING. LIGAND BINDING TO MONOMER A IS LIKELY AN REMARK 600 ARTEFACT OF CROSS-LINKING REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1772 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 529 NE2 REMARK 620 2 HIS A 563 NE2 109.8 REMARK 620 3 HOH A2013 O 76.4 172.9 REMARK 620 4 HOH A2014 O 156.9 93.0 81.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1773 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2003 O REMARK 620 2 HOH A2005 O 159.5 REMARK 620 3 HOH A2006 O 114.6 73.5 REMARK 620 4 HOH A2008 O 106.8 79.1 127.2 REMARK 620 5 HOH A2014 O 71.2 88.7 124.9 98.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1772 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 529 NE2 REMARK 620 2 HIS B 563 NE2 100.4 REMARK 620 3 ASP B 564 OD2 99.2 87.6 REMARK 620 4 HOH B2009 O 165.2 90.1 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1773 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 564 OD1 REMARK 620 2 HOH B2004 O 103.2 REMARK 620 3 HOH B2006 O 79.3 86.2 REMARK 620 4 HOH B2007 O 78.2 173.0 100.8 REMARK 620 5 HOH B2008 O 150.6 89.4 128.6 86.3 REMARK 620 6 HOH B2009 O 81.1 72.7 146.9 100.9 77.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EV1 B 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EV1 A 1771 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1772 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1773 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1772 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 1773 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LRB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF HUMAN PHOSPHODIESTERASE 10A DBREF 2WEY A 447 448 PDB 2WEY 2WEY 447 448 DBREF 2WEY A 449 789 UNP Q9Y233 PDE10_HUMAN 467 807 DBREF 2WEY B 447 448 PDB 2WEY 2WEY 447 448 DBREF 2WEY B 449 789 UNP Q9Y233 PDE10_HUMAN 467 807 SEQRES 1 A 343 HIS MET SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 A 343 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 A 343 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 A 343 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 A 343 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 A 343 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 A 343 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 A 343 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 A 343 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 A 343 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 A 343 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 A 343 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 A 343 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 A 343 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 A 343 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 A 343 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 A 343 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 A 343 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 A 343 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 A 343 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 A 343 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 A 343 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 A 343 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 A 343 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 A 343 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 A 343 ALA THR TRP ILE SER SER PRO SER VAL ALA GLN LYS ALA SEQRES 27 A 343 ALA ALA SER GLU ASP SEQRES 1 B 343 HIS MET SER ILE CYS THR SER GLU GLU TRP GLN GLY LEU SEQRES 2 B 343 MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS GLU ILE SEQRES 3 B 343 GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU ASN MET SEQRES 4 B 343 TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SER CYS SEQRES 5 B 343 GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS ARG PHE SEQRES 6 B 343 ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL PRO TYR SEQRES 7 B 343 HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS CYS MET SEQRES 8 B 343 TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE THR ASP SEQRES 9 B 343 LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU CYS HIS SEQRES 10 B 343 ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR LEU GLN SEQRES 11 B 343 LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER THR SER SEQRES 12 B 343 THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SER ILE SEQRES 13 B 343 LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR LEU SER SEQRES 14 B 343 SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE ARG LYS SEQRES 15 B 343 ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE GLY ASN SEQRES 16 B 343 ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SER LEU SEQRES 17 B 343 ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL ILE GLY SEQRES 18 B 343 LEU MET MET THR ALA CYS ASP LEU CYS SER VAL THR LYS SEQRES 19 B 343 LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP ILE TYR SEQRES 20 B 343 ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS LYS LEU SEQRES 21 B 343 GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP LYS LYS SEQRES 22 B 343 ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR ASN ALA SEQRES 23 B 343 VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN ILE LEU SEQRES 24 B 343 PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG ASP ASN SEQRES 25 B 343 LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU GLU THR SEQRES 26 B 343 ALA THR TRP ILE SER SER PRO SER VAL ALA GLN LYS ALA SEQRES 27 B 343 ALA ALA SER GLU ASP HET EV1 A1771 25 HET ZN A1772 1 HET MG A1773 1 HET EV1 B1771 25 HET ZN B1772 1 HET MG B1773 1 HETNAM EV1 1-(3,4-DIMETHOXYBENZYL)-6,7-DIMETHOXYISOQUINOLINE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETSYN EV1 PAPAVERINE FORMUL 3 EV1 2(C20 H21 N O4) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *23(H2 O) HELIX 1 1 GLU A 454 GLN A 461 1 8 HELIX 2 2 PRO A 465 GLU A 473 1 9 HELIX 3 3 ILE A 479 ASN A 484 5 6 HELIX 4 4 MET A 485 GLY A 499 1 15 HELIX 5 5 GLU A 504 LYS A 517 1 14 HELIX 6 6 ASN A 526 ASN A 543 1 18 HELIX 7 7 ASN A 544 PHE A 548 5 5 HELIX 8 8 THR A 549 ASP A 564 1 16 HELIX 9 9 SER A 571 PHE A 578 1 8 HELIX 10 10 HIS A 580 TYR A 586 1 7 HELIX 11 11 SER A 589 GLN A 604 1 16 HELIX 12 12 SER A 615 THR A 633 1 19 HELIX 13 13 ASP A 634 THR A 651 1 18 HELIX 14 14 ASN A 658 CYS A 676 1 19 HELIX 15 15 SER A 677 LYS A 680 5 4 HELIX 16 16 LEU A 681 LEU A 706 1 26 HELIX 17 17 ILE A 711 ASP A 715 5 5 HELIX 18 18 ASP A 715 ASP A 720 5 6 HELIX 19 19 GLU A 721 VAL A 733 1 13 HELIX 20 20 VAL A 733 LEU A 745 1 13 HELIX 21 21 THR A 748 ARG A 767 1 20 HELIX 22 22 THR B 452 PHE B 462 1 11 HELIX 23 23 VAL B 466 ILE B 472 1 7 HELIX 24 24 PHE B 482 ASN B 484 5 3 HELIX 25 25 MET B 485 CYS B 498 1 14 HELIX 26 26 GLU B 504 LYS B 517 1 14 HELIX 27 27 ASN B 526 ASN B 543 1 18 HELIX 28 28 ASN B 544 PHE B 548 5 5 HELIX 29 29 THR B 549 HIS B 563 1 15 HELIX 30 30 SER B 571 PHE B 578 1 8 HELIX 31 31 SER B 589 GLN B 604 1 16 HELIX 32 32 SER B 615 THR B 633 1 19 HELIX 33 33 ASP B 634 GLY B 652 1 19 HELIX 34 34 ASN B 658 CYS B 676 1 19 HELIX 35 35 SER B 677 LYS B 680 5 4 HELIX 36 36 LEU B 681 LYS B 705 1 25 HELIX 37 37 ILE B 711 ASP B 715 5 5 HELIX 38 38 LYS B 718 ASP B 720 5 3 HELIX 39 39 GLU B 721 VAL B 733 1 13 HELIX 40 40 VAL B 733 LEU B 745 1 13 HELIX 41 41 THR B 748 ARG B 767 1 20 LINK NE2 HIS A 529 ZN ZN A1772 1555 1555 2.28 LINK NE2 HIS A 563 ZN ZN A1772 1555 1555 1.96 LINK ZN ZN A1772 O HOH A2013 1555 1555 1.98 LINK ZN ZN A1772 O HOH A2014 1555 1555 1.84 LINK MG MG A1773 O HOH A2003 1555 1555 1.93 LINK MG MG A1773 O HOH A2005 1555 1555 2.54 LINK MG MG A1773 O HOH A2006 1555 1555 1.89 LINK MG MG A1773 O HOH A2008 1555 1555 2.02 LINK MG MG A1773 O HOH A2014 1555 1555 2.12 LINK NE2 HIS B 529 ZN ZN B1772 1555 1555 1.97 LINK NE2 HIS B 563 ZN ZN B1772 1555 1555 2.17 LINK OD2 ASP B 564 ZN ZN B1772 1555 1555 2.13 LINK OD1 ASP B 564 MG MG B1773 1555 1555 2.33 LINK ZN ZN B1772 O HOH B2009 1555 1555 1.99 LINK MG MG B1773 O HOH B2004 1555 1555 2.09 LINK MG MG B1773 O HOH B2006 1555 1555 1.91 LINK MG MG B1773 O HOH B2007 1555 1555 2.48 LINK MG MG B1773 O HOH B2008 1555 1555 2.12 LINK MG MG B1773 O HOH B2009 1555 1555 2.69 CISPEP 1 PHE B 578 ASP B 579 0 -6.96 SITE 1 AC1 5 LEU B 635 TYR B 693 PHE B 696 GLN B 726 SITE 2 AC1 5 PHE B 729 SITE 1 AC2 9 TYR A 524 HIS A 525 ILE A 692 GLU A 695 SITE 2 AC2 9 PHE A 696 GLY A 725 GLN A 726 PHE A 729 SITE 3 AC2 9 LEU B 706 SITE 1 AC3 6 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC3 6 HOH A2013 HOH A2014 SITE 1 AC4 7 ASP A 564 GLU A 592 HOH A2003 HOH A2005 SITE 2 AC4 7 HOH A2006 HOH A2008 HOH A2014 SITE 1 AC5 6 HIS B 529 HIS B 563 ASP B 564 ASP B 674 SITE 2 AC5 6 HOH B2005 HOH B2009 SITE 1 AC6 7 ASP B 564 GLU B 592 HOH B2004 HOH B2006 SITE 2 AC6 7 HOH B2007 HOH B2008 HOH B2009 CRYST1 50.840 81.570 157.550 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019670 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006347 0.00000