PDB Short entry for 2WKP HEADER TRANSFERASE, CELL ADHESION 16-JUN-09 2WKP TITLE STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING LOV2 WILDTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NPH1-1, RESIDUES 404-546 AND P21-RAC1, RESIDUES 4-180; COMPND 5 SYNONYM: RAC1_HUMAN, P21-RAC1, RAS-LIKE PROTEIN TC25, CELL MIGRATION- COMPND 6 INDUCING GENE 5 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVENA SATIVA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: OAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 4498, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL10 GOLD; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSFERASE, CELL ADHESION, GTPASE, SMALL G-PROTEIN, RHO FAMILY, RAS KEYWDS 2 SUPERFAMILY LOV2, ATP-BINDING, LIGHT-INDUCED SIGNAL TRANSDUCTION, KEYWDS 3 LOV2, PHOTOTROPIN1, NUCLEOTIDE-BINDING PROTEIN ENGINEERING, PROTEIN KEYWDS 4 DESIGN, CHIMERA EXPDTA X-RAY DIFFRACTION AUTHOR Y.I.WU,D.FREY,O.I.LUNGU,A.JAEHRIG,I.SCHLICHTING,B.KUHLMAN,K.M.HAHN REVDAT 5 13-DEC-23 2WKP 1 REMARK LINK REVDAT 4 15-MAR-17 2WKP 1 SOURCE REVDAT 3 03-NOV-09 2WKP 1 JRNL REVDAT 2 01-SEP-09 2WKP 1 KEYWDS JRNL DBREF REVDAT 1 18-AUG-09 2WKP 0 JRNL AUTH Y.I.WU,D.FREY,O.I.LUNGU,A.JAEHRIG,I.SCHLICHTING,B.KUHLMAN, JRNL AUTH 2 K.M.HAHN JRNL TITL A GENETICALLY ENCODED PHOTOACTIVATABLE RAC CONTROLS THE JRNL TITL 2 MOTILITY OF LIVING CELLS. JRNL REF NATURE V. 461 104 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19693014 JRNL DOI 10.1038/NATURE08241 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41133 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2298 - 4.6835 0.99 2722 140 0.1603 0.1883 REMARK 3 2 4.6835 - 3.7183 1.00 2649 138 0.1351 0.1483 REMARK 3 3 3.7183 - 3.2485 1.00 2626 141 0.1511 0.1594 REMARK 3 4 3.2485 - 2.9516 1.00 2616 135 0.1681 0.1778 REMARK 3 5 2.9516 - 2.7401 1.00 2614 136 0.1799 0.1945 REMARK 3 6 2.7401 - 2.5786 1.00 2591 137 0.1701 0.2355 REMARK 3 7 2.5786 - 2.4494 1.00 2634 136 0.1761 0.2280 REMARK 3 8 2.4494 - 2.3428 1.00 2564 138 0.1704 0.2231 REMARK 3 9 2.3428 - 2.2526 1.00 2605 135 0.1678 0.2538 REMARK 3 10 2.2526 - 2.1749 1.00 2589 134 0.1653 0.1992 REMARK 3 11 2.1749 - 2.1069 1.00 2577 130 0.1693 0.1974 REMARK 3 12 2.1069 - 2.0467 1.00 2571 132 0.1688 0.2132 REMARK 3 13 2.0467 - 1.9928 1.00 2561 136 0.1755 0.2116 REMARK 3 14 1.9928 - 1.9442 1.00 2607 134 0.1908 0.2091 REMARK 3 15 1.9442 - 1.9000 1.00 2570 135 0.2146 0.2769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 44.16 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.58690 REMARK 3 B22 (A**2) : 1.58690 REMARK 3 B33 (A**2) : -3.17390 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2743 REMARK 3 ANGLE : 1.196 3756 REMARK 3 CHIRALITY : 0.085 427 REMARK 3 PLANARITY : 0.005 472 REMARK 3 DIHEDRAL : 19.172 1044 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41136 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1MH1, 2VOU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM CA ACETATE, 100 MM SODIUM REMARK 280 CACODYLATE PH 5.5, 12 % (W/V) PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.34667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.17333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.17333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 61 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 91 TO HIS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 92 TO HIS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 392 REMARK 465 ARG A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 GLY A 402 REMARK 465 SER A 403 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 522 -128.13 43.51 REMARK 500 VAL A 579 -82.51 -97.02 REMARK 500 LYS A 639 -55.77 -127.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2199 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2200 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1727 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 443 O REMARK 620 2 LEU A 446 O 85.7 REMARK 620 3 ASP A 581 OD2 155.7 81.5 REMARK 620 4 ASP A 581 OD1 145.0 128.7 48.9 REMARK 620 5 HOH A2036 O 73.9 156.4 121.8 73.4 REMARK 620 6 HOH A2149 O 117.7 83.7 81.4 77.6 95.4 REMARK 620 7 HOH A2151 O 82.2 100.4 79.9 84.8 88.5 160.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1726 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 560 OG1 REMARK 620 2 THR A 578 OG1 80.4 REMARK 620 3 GTP A1724 O1G 172.7 92.7 REMARK 620 4 GTP A1724 O1B 90.7 170.0 96.0 REMARK 620 5 HOH A2137 O 90.3 90.4 92.1 94.2 REMARK 620 6 HOH A2168 O 87.9 87.5 89.5 87.6 177.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1726 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1727 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V0U RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404- REMARK 900 546)) REMARK 900 RELATED ID: 2V1A RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) DARK REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 900 RELATED ID: 1RYH RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B , A SELF-ACTIVATING REMARK 900 GTPASE REMARK 900 RELATED ID: 1HH4 RELATED DB: PDB REMARK 900 RAC1-RHOGDI COMPLEX INVOLVED IN NADPH OXIDASE ACTIVATION REMARK 900 RELATED ID: 2VRW RELATED DB: PDB REMARK 900 CRITICAL STRUCTURAL ROLE FOR THE PH AND C1 DOMAINS OF THE VAV1 REMARK 900 EXCHANGE FACTOR REMARK 900 RELATED ID: 1E96 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAC/P67PHOX COMPLEX REMARK 900 RELATED ID: 1I4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP COMPLEXED WITHARFAPTIN (P21) REMARK 900 RELATED ID: 1FOE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAC1 IN COMPLEX WITH THE GUANINENUCLEOTIDE REMARK 900 EXCHANGE REGION OF TIAM1 REMARK 900 RELATED ID: 1G4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SALMONELLA TYROSINE PHOSPHATASEAND GTPASE REMARK 900 ACTIVATING PROTEIN SPTP BOUND TO RAC1 REMARK 900 RELATED ID: 2FJU RELATED DB: PDB REMARK 900 ACTIVATED RAC1 BOUND TO ITS EFFECTOR PHOSPHOLIPASE C BETA 2 REMARK 900 RELATED ID: 1MH1 RELATED DB: PDB REMARK 900 SMALL G-PROTEIN REMARK 900 RELATED ID: 1I4L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP IN COMPLEX WITHARFAPTIN (P41) REMARK 900 RELATED ID: 1HE1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GAP DOMAIN OF THE REMARK 900 PSEUDOMONAS AERUGINOSA EXOS TOXIN AND HUMAN RAC REMARK 900 RELATED ID: 1I4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GMPPNP IN COMPLEX WITHARFAPTIN REMARK 900 RELATED ID: 2V0W RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO-TRAPPED LIGHT STRUCTURE OF REMARK 900 LOV2 (404-546)) REMARK 900 RELATED ID: 2V1B RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) LIGHT REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 900 RELATED ID: 1RYF RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B , A SELF-ACTIVATING REMARK 900 GTPASE REMARK 900 RELATED ID: 2WKR RELATED DB: PDB REMARK 900 STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING THE LOV2 C450M REMARK 900 MUTANT REMARK 900 RELATED ID: 2WKQ RELATED DB: PDB REMARK 900 STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING THE LOV2 C450A REMARK 900 MUTANT DBREF 2WKP A 404 546 UNP O49003 O49003_AVESA 404 546 DBREF 2WKP A 547 723 UNP P63000 RAC1_HUMAN 4 180 SEQADV 2WKP MET A 392 UNP P63000 EXPRESSION TAG SEQADV 2WKP ARG A 393 UNP P63000 EXPRESSION TAG SEQADV 2WKP GLY A 394 UNP P63000 EXPRESSION TAG SEQADV 2WKP SER A 395 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 396 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 397 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 398 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 399 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 400 UNP P63000 EXPRESSION TAG SEQADV 2WKP HIS A 401 UNP P63000 EXPRESSION TAG SEQADV 2WKP GLY A 402 UNP P63000 EXPRESSION TAG SEQADV 2WKP SER A 403 UNP P63000 EXPRESSION TAG SEQADV 2WKP LEU A 604 UNP P63000 GLN 61 ENGINEERED MUTATION SEQADV 2WKP HIS A 634 UNP P63000 GLU 91 ENGINEERED MUTATION SEQADV 2WKP HIS A 635 UNP P63000 ASN 92 ENGINEERED MUTATION SEQRES 1 A 332 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER LEU SEQRES 2 A 332 ALA THR THR LEU GLU ARG ILE GLU LYS ASN PHE VAL ILE SEQRES 3 A 332 THR ASP PRO ARG LEU PRO ASP ASN PRO ILE ILE PHE ALA SEQRES 4 A 332 SER ASP SER PHE LEU GLN LEU THR GLU TYR SER ARG GLU SEQRES 5 A 332 GLU ILE LEU GLY ARG ASN CYS ARG PHE LEU GLN GLY PRO SEQRES 6 A 332 GLU THR ASP ARG ALA THR VAL ARG LYS ILE ARG ASP ALA SEQRES 7 A 332 ILE ASP ASN GLN THR GLU VAL THR VAL GLN LEU ILE ASN SEQRES 8 A 332 TYR THR LYS SER GLY LYS LYS PHE TRP ASN LEU PHE HIS SEQRES 9 A 332 LEU GLN PRO MET ARG ASP GLN LYS GLY ASP VAL GLN TYR SEQRES 10 A 332 PHE ILE GLY VAL GLN LEU ASP GLY THR GLU HIS VAL ARG SEQRES 11 A 332 ASP ALA ALA GLU ARG GLU GLY VAL MET LEU ILE LYS LYS SEQRES 12 A 332 THR ALA GLU ASN ILE ASP GLU ALA ALA LYS GLU LEU ILE SEQRES 13 A 332 LYS CYS VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS THR SEQRES 14 A 332 CYS LEU LEU ILE SER TYR THR THR ASN ALA PHE PRO GLY SEQRES 15 A 332 GLU TYR ILE PRO THR VAL PHE ASP ASN TYR SER ALA ASN SEQRES 16 A 332 VAL MET VAL ASP GLY LYS PRO VAL ASN LEU GLY LEU TRP SEQRES 17 A 332 ASP THR ALA GLY LEU GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 18 A 332 LEU SER TYR PRO GLN THR ASP VAL PHE LEU ILE CYS PHE SEQRES 19 A 332 SER LEU VAL SER PRO ALA SER PHE HIS HIS VAL ARG ALA SEQRES 20 A 332 LYS TRP TYR PRO GLU VAL ARG HIS HIS CYS PRO ASN THR SEQRES 21 A 332 PRO ILE ILE LEU VAL GLY THR LYS LEU ASP LEU ARG ASP SEQRES 22 A 332 ASP LYS ASP THR ILE GLU LYS LEU LYS GLU LYS LYS LEU SEQRES 23 A 332 THR PRO ILE THR TYR PRO GLN GLY LEU ALA MET ALA LYS SEQRES 24 A 332 GLU ILE GLY ALA VAL LYS TYR LEU GLU CYS SER ALA LEU SEQRES 25 A 332 THR GLN ARG GLY LEU LYS THR VAL PHE ASP GLU ALA ILE SEQRES 26 A 332 ARG ALA VAL LEU CYS PRO PRO HET GTP A1724 32 HET FMN A1725 31 HET MG A1726 1 HET CA A1727 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 MG MG 2+ FORMUL 5 CA CA 2+ FORMUL 6 HOH *313(H2 O) HELIX 1 1 THR A 407 ILE A 411 5 5 HELIX 2 2 SER A 431 GLU A 439 1 9 HELIX 3 3 SER A 441 LEU A 446 1 6 HELIX 4 4 ASN A 449 GLN A 454 5 6 HELIX 5 5 ASP A 459 ASN A 472 1 14 HELIX 6 6 ARG A 521 LYS A 544 1 24 HELIX 7 7 GLY A 558 ASN A 569 1 12 HELIX 8 8 LEU A 604 ASP A 608 5 5 HELIX 9 9 LEU A 610 TYR A 615 5 6 HELIX 10 10 SER A 629 LYS A 639 1 11 HELIX 11 11 LYS A 639 CYS A 648 1 10 HELIX 12 12 LYS A 659 ARG A 663 5 5 HELIX 13 13 ASP A 665 LYS A 675 1 11 HELIX 14 14 THR A 681 GLY A 693 1 13 HELIX 15 15 GLY A 707 CYS A 721 1 15 SHEET 1 AA 5 ILE A 427 ALA A 430 0 SHEET 2 AA 5 PHE A 415 THR A 418 -1 O ILE A 417 N ILE A 428 SHEET 3 AA 5 VAL A 506 GLY A 516 -1 O PHE A 509 N THR A 418 SHEET 4 AA 5 LYS A 489 ARG A 500 -1 O TRP A 491 N GLY A 516 SHEET 5 AA 5 VAL A 476 TYR A 483 -1 O VAL A 476 N LEU A 496 SHEET 1 AB 6 PHE A 580 VAL A 589 0 SHEET 2 AB 6 LYS A 592 THR A 601 -1 O LYS A 592 N VAL A 589 SHEET 3 AB 6 ILE A 547 GLY A 553 1 O ILE A 547 N GLY A 597 SHEET 4 AB 6 VAL A 620 SER A 626 1 O VAL A 620 N VAL A 550 SHEET 5 AB 6 ILE A 653 THR A 658 1 O ILE A 654 N ILE A 623 SHEET 6 AB 6 LYS A 696 GLU A 699 1 O LYS A 696 N LEU A 655 LINK O GLU A 443 CA CA A1727 1555 1555 2.56 LINK O LEU A 446 CA CA A1727 1555 1555 2.45 LINK OG1 THR A 560 MG MG A1726 1555 1555 2.13 LINK OG1 THR A 578 MG MG A1726 1555 1555 2.22 LINK OD2 ASP A 581 CA CA A1727 1555 1555 2.52 LINK OD1 ASP A 581 CA CA A1727 1555 1555 2.76 LINK O1G GTP A1724 MG MG A1726 1555 1555 2.04 LINK O1B GTP A1724 MG MG A1726 1555 1555 2.13 LINK MG MG A1726 O HOH A2137 1555 1555 2.09 LINK MG MG A1726 O HOH A2168 1555 1555 2.31 LINK CA CA A1727 O HOH A2036 1555 1555 2.51 LINK CA CA A1727 O HOH A2149 1555 1555 2.89 LINK CA CA A1727 O HOH A2151 1555 1555 2.51 SITE 1 AC1 24 GLY A 555 ALA A 556 VAL A 557 GLY A 558 SITE 2 AC1 24 LYS A 559 THR A 560 CYS A 561 GLY A 573 SITE 3 AC1 24 TYR A 575 THR A 578 GLY A 603 LYS A 659 SITE 4 AC1 24 ASP A 661 LEU A 662 SER A 701 ALA A 702 SITE 5 AC1 24 LEU A 703 MG A1726 HOH A2130 HOH A2137 SITE 6 AC1 24 HOH A2168 HOH A2306 HOH A2307 HOH A2308 SITE 1 AC2 29 VAL A 416 THR A 418 ASN A 425 ASN A 449 SITE 2 AC2 29 CYS A 450 ARG A 451 LEU A 453 GLN A 454 SITE 3 AC2 29 VAL A 463 ARG A 464 ILE A 466 ARG A 467 SITE 4 AC2 29 ILE A 470 LEU A 480 ASN A 482 ASN A 492 SITE 5 AC2 29 PHE A 494 LEU A 496 PHE A 509 ILE A 510 SITE 6 AC2 29 GLY A 511 GLN A 513 HOH A2016 HOH A2056 SITE 7 AC2 29 HOH A2309 HOH A2310 HOH A2311 HOH A2312 SITE 8 AC2 29 HOH A2313 SITE 1 AC3 5 THR A 560 THR A 578 GTP A1724 HOH A2137 SITE 2 AC3 5 HOH A2168 SITE 1 AC4 6 GLU A 443 LEU A 446 ASP A 581 HOH A2036 SITE 2 AC4 6 HOH A2149 HOH A2151 CRYST1 113.880 113.880 69.520 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008781 0.005070 0.000000 0.00000 SCALE2 0.000000 0.010140 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014384 0.00000