PDB Short entry for 2WQM HEADER TRANSFERASE 24-AUG-09 2WQM TITLE STRUCTURE OF APO HUMAN NEK7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE NEK7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEK7, NIMA-RELATED PROTEIN KINASE 7; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RPIL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS ATP-BINDING, POLYMORPHISM, METAL-BINDING, SERINE/THREONINE-PROTEIN KEYWDS 2 KINASE, CELL CYCLE KINASE, MITOSIS, CYTOPLASM, MAGNESIUM, KEYWDS 3 TRANSFERASE, PHOSPHOPROTEIN, PROTEIN KINASE, NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.W.RICHARDS,R.BAYLISS REVDAT 2 20-DEC-23 2WQM 1 REMARK LINK REVDAT 1 08-DEC-09 2WQM 0 JRNL AUTH M.W.RICHARDS,L.O'REGAN,C.MAS-DROUX,J.M.Y.BLOT,J.CHEUNG, JRNL AUTH 2 S.HOELDER,A.M.FRY,R.BAYLISS JRNL TITL AN AUTO-INHIBITORY TYROSINE MOTIF IN THE CELL-CYCLE JRNL TITL 2 REGULATED NEK7 KINASE IS RELEASED THROUGH BINDING OF NEK9 JRNL REF MOL.CELL V. 36 560 2009 JRNL REFN ISSN 1097-2765 JRNL PMID 19941817 JRNL DOI 10.1016/J.MOLCEL.2009.09.038 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 22221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9770 - 4.1124 0.92 2822 123 0.1719 0.1932 REMARK 3 2 4.1124 - 3.3031 0.95 2782 156 0.1454 0.2019 REMARK 3 3 3.3031 - 2.8972 0.94 2751 133 0.1667 0.2148 REMARK 3 4 2.8972 - 2.6377 0.93 2705 130 0.1753 0.1907 REMARK 3 5 2.6377 - 2.4516 0.91 2623 152 0.1767 0.2461 REMARK 3 6 2.4516 - 2.3090 0.89 2536 142 0.1845 0.2150 REMARK 3 7 2.3090 - 2.1946 0.87 2503 129 0.2081 0.2704 REMARK 3 8 2.1946 - 2.1000 0.84 2393 141 0.2199 0.2716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 67.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.40720 REMARK 3 B22 (A**2) : -6.51700 REMARK 3 B33 (A**2) : 16.92420 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2151 REMARK 3 ANGLE : 1.063 2914 REMARK 3 CHIRALITY : 0.072 317 REMARK 3 PLANARITY : 0.004 376 REMARK 3 DIHEDRAL : 16.637 799 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 20:117) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1961 39.7848 24.7703 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.3245 REMARK 3 T33: 0.2550 T12: 0.0320 REMARK 3 T13: -0.0085 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 2.9039 L22: 3.2729 REMARK 3 L33: 1.6424 L12: 1.4092 REMARK 3 L13: 0.2770 L23: 0.7803 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: 0.5133 S13: 0.1686 REMARK 3 S21: -0.4912 S22: 0.1064 S23: 0.1416 REMARK 3 S31: -0.2156 S32: 0.1077 S33: -0.1231 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 118:203) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0708 18.0787 24.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.1929 REMARK 3 T33: 0.3807 T12: -0.0341 REMARK 3 T13: 0.0108 T23: -0.0520 REMARK 3 L TENSOR REMARK 3 L11: 4.3165 L22: 3.4645 REMARK 3 L33: 1.3409 L12: -1.9392 REMARK 3 L13: 0.0896 L23: 0.8569 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: -0.0586 S13: 0.8535 REMARK 3 S21: -0.1049 S22: 0.0670 S23: -0.7715 REMARK 3 S31: -0.0698 S32: 0.0635 S33: 0.0107 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 204:254) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0031 12.2026 10.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.3032 T22: 0.2540 REMARK 3 T33: 0.1471 T12: 0.0261 REMARK 3 T13: 0.0018 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 1.1375 L22: 1.0010 REMARK 3 L33: 1.2130 L12: -0.1053 REMARK 3 L13: 1.0462 L23: -0.2097 REMARK 3 S TENSOR REMARK 3 S11: 0.0735 S12: 0.4276 S13: 0.0841 REMARK 3 S21: -0.4321 S22: -0.0451 S23: -0.0977 REMARK 3 S31: -0.0180 S32: 0.1638 S33: -0.0212 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 255:300) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2532 4.5618 23.5563 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1799 REMARK 3 T33: 0.1387 T12: -0.0298 REMARK 3 T13: -0.0129 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 2.8296 L22: 2.6918 REMARK 3 L33: 1.5214 L12: 0.1992 REMARK 3 L13: 0.5864 L23: 0.2046 REMARK 3 S TENSOR REMARK 3 S11: 0.2212 S12: -0.1711 S13: -0.5266 REMARK 3 S21: 0.0867 S22: -0.0770 S23: 0.0565 REMARK 3 S31: 0.1283 S32: -0.0012 S33: -0.1375 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WQM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23808 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 66.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W5B REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.5, 15% PEG 5000 REMARK 280 MME, 400 MM AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.46850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.16100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.68300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.46850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.16100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.68300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.46850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.16100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.68300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.46850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.16100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.68300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NI NI A1302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 7 REMARK 465 MET A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 44 REMARK 465 PHE A 45 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 PHE A 185 REMARK 465 PHE A 186 REMARK 465 SER A 187 REMARK 465 SER A 188 REMARK 465 LYS A 189 REMARK 465 THR A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 SER A 195 REMARK 465 LEU A 196 REMARK 465 VAL A 197 REMARK 465 GLY A 198 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 LYS A 240 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 ARG A 42 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 70 CG CD1 CD2 REMARK 470 ASP A 72 CG OD1 OD2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 THR A 199 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 29 O ALA A 171 8455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 70 3.71 -156.13 REMARK 500 ARG A 160 -13.51 83.33 REMARK 500 ASP A 161 52.94 -144.52 REMARK 500 CYS A 253 47.76 33.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 209 NE2 REMARK 620 2 HIS A 209 NE2 112.9 REMARK 620 3 CYS A 247 SG 104.2 112.9 REMARK 620 4 CYS A 247 SG 112.9 104.2 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WQN RELATED DB: PDB REMARK 900 STRUCTURE OF ADP-BOUND HUMAN NEK7 REMARK 900 RELATED ID: 2WQO RELATED DB: PDB REMARK 900 NEK7 REMARK 999 REMARK 999 SEQUENCE REMARK 999 ADDITION OF C-TERMINAL HIS6 TAG AND LINKER LEHHHHHH DBREF 2WQM A 1 302 UNP Q8TDX7 NEK7_HUMAN 1 302 DBREF 2WQM A 303 310 PDB 2WQM 2WQM 303 310 SEQRES 1 A 310 MET ASP GLU GLN SER GLN GLY MET GLN GLY PRO PRO VAL SEQRES 2 A 310 PRO GLN PHE GLN PRO GLN LYS ALA LEU ARG PRO ASP MET SEQRES 3 A 310 GLY TYR ASN THR LEU ALA ASN PHE ARG ILE GLU LYS LYS SEQRES 4 A 310 ILE GLY ARG GLY GLN PHE SER GLU VAL TYR ARG ALA ALA SEQRES 5 A 310 CYS LEU LEU ASP GLY VAL PRO VAL ALA LEU LYS LYS VAL SEQRES 6 A 310 GLN ILE PHE ASP LEU MET ASP ALA LYS ALA ARG ALA ASP SEQRES 7 A 310 CYS ILE LYS GLU ILE ASP LEU LEU LYS GLN LEU ASN HIS SEQRES 8 A 310 PRO ASN VAL ILE LYS TYR TYR ALA SER PHE ILE GLU ASP SEQRES 9 A 310 ASN GLU LEU ASN ILE VAL LEU GLU LEU ALA ASP ALA GLY SEQRES 10 A 310 ASP LEU SER ARG MET ILE LYS HIS PHE LYS LYS GLN LYS SEQRES 11 A 310 ARG LEU ILE PRO GLU ARG THR VAL TRP LYS TYR PHE VAL SEQRES 12 A 310 GLN LEU CYS SER ALA LEU GLU HIS MET HIS SER ARG ARG SEQRES 13 A 310 VAL MET HIS ARG ASP ILE LYS PRO ALA ASN VAL PHE ILE SEQRES 14 A 310 THR ALA THR GLY VAL VAL LYS LEU GLY ASP LEU GLY LEU SEQRES 15 A 310 GLY ARG PHE PHE SER SER LYS THR THR ALA ALA HIS SER SEQRES 16 A 310 LEU VAL GLY THR PRO TYR TYR MET SER PRO GLU ARG ILE SEQRES 17 A 310 HIS GLU ASN GLY TYR ASN PHE LYS SER ASP ILE TRP SER SEQRES 18 A 310 LEU GLY CYS LEU LEU TYR GLU MET ALA ALA LEU GLN SER SEQRES 19 A 310 PRO PHE TYR GLY ASP LYS MET ASN LEU TYR SER LEU CYS SEQRES 20 A 310 LYS LYS ILE GLU GLN CYS ASP TYR PRO PRO LEU PRO SER SEQRES 21 A 310 ASP HIS TYR SER GLU GLU LEU ARG GLN LEU VAL ASN MET SEQRES 22 A 310 CYS ILE ASN PRO ASP PRO GLU LYS ARG PRO ASP VAL THR SEQRES 23 A 310 TYR VAL TYR ASP VAL ALA LYS ARG MET HIS ALA CYS THR SEQRES 24 A 310 ALA SER SER LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A1301 5 HET NI A1302 1 HETNAM SO4 SULFATE ION HETNAM NI NICKEL (II) ION FORMUL 2 SO4 O4 S 2- FORMUL 3 NI NI 2+ FORMUL 4 HOH *179(H2 O) HELIX 1 1 THR A 30 ALA A 32 5 3 HELIX 2 2 ASP A 72 GLN A 88 1 17 HELIX 3 3 ASP A 118 GLN A 129 1 12 HELIX 4 4 PRO A 134 ARG A 155 1 22 HELIX 5 5 LYS A 163 VAL A 167 5 5 HELIX 6 6 SER A 204 HIS A 209 1 6 HELIX 7 7 ASN A 214 LEU A 222 1 9 HELIX 8 8 CYS A 224 LEU A 232 1 9 HELIX 9 9 ASN A 242 GLN A 252 1 11 HELIX 10 10 SER A 264 ILE A 275 1 12 HELIX 11 11 ASP A 278 ARG A 282 5 5 HELIX 12 12 ASP A 284 ALA A 300 1 17 SHEET 1 AA 5 PHE A 34 LYS A 39 0 SHEET 2 AA 5 GLU A 47 CYS A 53 -1 O ARG A 50 N GLU A 37 SHEET 3 AA 5 PRO A 59 VAL A 65 -1 O VAL A 60 N ALA A 51 SHEET 4 AA 5 GLU A 106 GLU A 112 -1 O LEU A 107 N VAL A 65 SHEET 5 AA 5 TYR A 97 GLU A 103 -1 N TYR A 98 O VAL A 110 SHEET 1 AB 2 PHE A 168 ILE A 169 0 SHEET 2 AB 2 VAL A 175 LYS A 176 -1 O LYS A 176 N PHE A 168 LINK NE2 HIS A 209 NI NI A1302 1555 1555 2.10 LINK NE2 HIS A 209 NI NI A1302 3555 1555 2.10 LINK SG CYS A 247 NI NI A1302 1555 1555 2.39 LINK SG CYS A 247 NI NI A1302 3555 1555 2.39 SITE 1 AC1 6 ARG A 23 ARG A 136 THR A 137 LYS A 140 SITE 2 AC1 6 HOH A2178 HOH A2179 SITE 1 AC2 2 HIS A 209 CYS A 247 CRYST1 46.937 132.322 133.366 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007498 0.00000