PDB Short entry for 2WZV HEADER OXIDOREDUCTASE 03-DEC-09 2WZV TITLE CRYSTAL STRUCTURE OF THE FMN-DEPENDENT NITROREDUCTASE NFNB TITLE 2 FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NFNB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NITROREDUCTASE NFNB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS NITROREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BELLINZONI,G.MANINA,G.RICCARDI,P.M.ALZARI REVDAT 3 18-MAY-11 2WZV 1 JRNL REMARK REVDAT 2 28-JUL-10 2WZV 1 JRNL REVDAT 1 14-JUL-10 2WZV 0 JRNL AUTH G.MANINA,M.BELLINZONI,M.R.PASCA,J.NERES,A.MILANO, JRNL AUTH 2 A.L.RIBEIRO,S.BURONI,H.SKOVIEROVA,P.DIANISKOVA,K.MIKUSOVA, JRNL AUTH 3 J.MARAK,V.MAKAROV,D.GIGANTI,A.HAOUZ,A.P.LUCARELLI, JRNL AUTH 4 G.DEGIACOMI,A.PIAZZA,L.R.CHIARELLI,E.DE ROSSI,E.SALINA, JRNL AUTH 5 S.T.COLE,P.M.ALZARI,G.RICCARDI JRNL TITL BIOLOGICAL AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 MYCOBACTERIUM SMEGMATIS NITROREDUCTASE NFNB, AND ITS ROLE JRNL TITL 3 IN BENZOTHIAZINONE RESISTANCE JRNL REF MOL.MICROBIOL. V. 77 1172 2010 JRNL REFN ISSN 0950-382X JRNL PMID 20624223 JRNL DOI 10.1111/J.1365-2958.2010.07277.X REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.66 REMARK 3 NUMBER OF REFLECTIONS : 58852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.1519 REMARK 3 R VALUE (WORKING SET) : 0.1507 REMARK 3 FREE R VALUE : 0.1743 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.08 REMARK 3 FREE R VALUE TEST SET COUNT : 2989 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4294 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1914 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4083 REMARK 3 BIN R VALUE (WORKING SET) : 0.1891 REMARK 3 BIN FREE R VALUE : 0.2354 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.91 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.9118 REMARK 3 B22 (A**2) : -1.7364 REMARK 3 B33 (A**2) : -2.1755 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.161 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.082 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.080 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.080 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.079 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.9578 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.9535 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3649 ; 2.00 ; HARMONIC REMARK 3 BOND ANGLES : 4973 ; 2.00 ; HARMONIC REMARK 3 TORSION ANGLES : 1259 ; 2.00 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 89 ; 2.00 ; HARMONIC REMARK 3 GENERAL PLANES : 563 ; 5.00 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3583 ; 20.00 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 464 ; 5.00 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4597 ; 4.00 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.28 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.09 REMARK 3 REMARK 3 TLS DETAILS. REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 13:91) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9862 -84.4231 -29.3348 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0723 REMARK 3 T33: 0.0574 T12: 0.0027 REMARK 3 T13: -0.0050 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 1.0760 L22: 0.5981 REMARK 3 L33: 0.4511 L12: -0.1234 REMARK 3 L13: -0.0137 L23: -0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: 0.1636 S13: 0.2221 REMARK 3 S21: -0.0513 S22: -0.0130 S23: 0.0297 REMARK 3 S31: -0.0582 S32: -0.0204 S33: 0.0219 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 92:119) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4161 -74.5900 -19.1032 REMARK 3 T TENSOR REMARK 3 T11: 0.0090 T22: -0.0019 REMARK 3 T33: 0.1759 T12: -0.0333 REMARK 3 T13: -0.0358 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.9445 L22: 0.6772 REMARK 3 L33: 1.5430 L12: -0.6056 REMARK 3 L13: 0.3980 L23: 0.4744 REMARK 3 S TENSOR REMARK 3 S11: -0.1205 S12: -0.0150 S13: 0.5039 REMARK 3 S21: 0.1401 S22: -0.1152 S23: -0.0082 REMARK 3 S31: -0.2093 S32: 0.0854 S33: 0.2357 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 120:132) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1092 -62.8072 -25.8853 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.2109 REMARK 3 T33: 0.5085 T12: -0.0018 REMARK 3 T13: -0.0762 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 5.4344 L22: 10.1078 REMARK 3 L33: 0.6259 L12: 11.4670 REMARK 3 L13: 0.6118 L23: 1.1441 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: -0.9106 S13: 1.0212 REMARK 3 S21: 0.2641 S22: -0.5026 S23: 0.2355 REMARK 3 S31: -0.1585 S32: -0.0360 S33: 0.4162 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 133:234) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9755 -84.0818 -24.5477 REMARK 3 T TENSOR REMARK 3 T11: 0.0511 T22: 0.0668 REMARK 3 T33: 0.0833 T12: -0.0036 REMARK 3 T13: 0.0053 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.1978 L22: 0.5469 REMARK 3 L33: 0.4272 L12: -0.2748 REMARK 3 L13: 0.3139 L23: -0.2306 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.0830 S13: 0.1688 REMARK 3 S21: -0.0047 S22: -0.0055 S23: -0.0118 REMARK 3 S31: -0.0225 S32: 0.0123 S33: 0.0245 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 12:91) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1577 -102.4640 -18.7769 REMARK 3 T TENSOR REMARK 3 T11: 0.0659 T22: 0.0841 REMARK 3 T33: 0.0710 T12: 0.0050 REMARK 3 T13: 0.0112 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.5470 L22: 0.8264 REMARK 3 L33: 0.4317 L12: -0.3619 REMARK 3 L13: 0.0417 L23: 0.0351 REMARK 3 S TENSOR REMARK 3 S11: -0.0263 S12: 0.0254 S13: -0.0355 REMARK 3 S21: 0.0562 S22: 0.0063 S23: -0.0716 REMARK 3 S31: 0.0867 S32: 0.0523 S33: 0.0200 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 92:98) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7184 -94.6340 -5.4962 REMARK 3 T TENSOR REMARK 3 T11: 0.2156 T22: 0.7594 REMARK 3 T33: 0.2819 T12: 0.0950 REMARK 3 T13: 0.0319 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 13.0810 REMARK 3 L33: 46.8111 L12: -0.2437 REMARK 3 L13: 4.5580 L23: -25.4075 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.0641 S13: -0.0782 REMARK 3 S21: -0.2017 S22: 0.2762 S23: 0.1949 REMARK 3 S31: 0.2799 S32: -1.3089 S33: -0.3117 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 99:127) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3200 -111.7640 -11.7216 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.1363 REMARK 3 T33: 0.0836 T12: -0.0423 REMARK 3 T13: 0.0657 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.1262 L22: 2.5204 REMARK 3 L33: 2.8834 L12: 0.3584 REMARK 3 L13: 0.0971 L23: -1.6974 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.1168 S13: -0.0836 REMARK 3 S21: 0.2907 S22: 0.1287 S23: 0.4489 REMARK 3 S31: 0.0325 S32: -0.1992 S33: -0.0821 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 128:234) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9793 -101.1500 -16.7038 REMARK 3 T TENSOR REMARK 3 T11: 0.0528 T22: 0.0505 REMARK 3 T33: 0.0346 T12: -0.0015 REMARK 3 T13: 0.0015 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.6662 L22: 0.7510 REMARK 3 L33: 0.2681 L12: -0.2917 REMARK 3 L13: -0.0868 L23: -0.0917 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.0115 S13: 0.0124 REMARK 3 S21: 0.0364 S22: 0.0095 S23: 0.0051 REMARK 3 S31: 0.0406 S32: 0.0179 S33: 0.0041 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. ATOM RECORDS CONTAIN ISOTROPIC EQUIVALENTS REMARK 3 OF THE SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS REMARK 3 CONTAIN SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2WZV COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-09. REMARK 100 THE PDBE ID CODE IS EBI-41921. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : CHANNEL CUT MONOCHROMATOR REMARK 200 CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF REMARK 200 BI-MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.75 REMARK 200 RESOLUTION RANGE LOW (A) : 44.20 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.7 REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX-AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.9 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG8000, 6% (V/V) REMARK 280 ISOPROPANOL, 200 MM NH4H2PO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.59500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.45050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.48550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.45050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.48550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.59500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.48550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.45050 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.48550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.59500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.45050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2160 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2169 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 LEU B 6 REMARK 465 PRO B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 THR B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 94 CG CD OE1 OE2 REMARK 470 ARG A 120 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 124 CG OD1 OD2 REMARK 470 LEU B 96 CG CD1 CD2 REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 B 1236 O HOH B 2179 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2061 O HOH B 2116 8534 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 152 -164.27 -128.92 REMARK 500 ALA B 30 119.18 -163.30 REMARK 500 GLU B 152 -162.49 -129.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1237 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1237 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FMN-DEPENDENT REMARK 900 NITROREDUCTASE NFNB FROM MYCOBACTERIUM SMEGMATIS REMARK 900 IN COMPLEX WITH NADPH REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST GLY RESIDUE IS A PURIFICATION TAG LEFTOVER DBREF 2WZV A 1 234 UNP A0R6D0 A0R6D0_MYCS2 1 234 DBREF 2WZV B 1 234 UNP A0R6D0 A0R6D0_MYCS2 1 234 SEQADV 2WZV GLY A 0 UNP A0R6D0 EXPRESSION TAG SEQADV 2WZV GLY B 0 UNP A0R6D0 EXPRESSION TAG SEQRES 1 A 235 GLY MSE SER VAL PRO THR LEU PRO THR GLY PRO THR VAL SEQRES 2 A 235 ASP LEU ALA GLN ALA ALA GLU ARG LEU ILE LYS GLY ARG SEQRES 3 A 235 ARG ALA VAL ARG ALA PHE ARG PRO ASP GLU VAL PRO GLU SEQRES 4 A 235 GLU THR MSE ARG ALA VAL PHE GLU LEU ALA GLY HIS ALA SEQRES 5 A 235 PRO SER ASN SER ASN THR GLN PRO TRP HIS VAL GLU VAL SEQRES 6 A 235 VAL SER GLY ALA ALA ARG ASP ARG LEU ALA GLU ALA LEU SEQRES 7 A 235 VAL THR ALA HIS ALA GLU GLU ARG VAL THR VAL ASP PHE SEQRES 8 A 235 PRO TYR ARG GLU GLY LEU PHE GLN GLY VAL LEU GLN GLU SEQRES 9 A 235 ARG ARG ALA ASP PHE GLY SER ARG LEU TYR ALA ALA LEU SEQRES 10 A 235 GLY ILE ALA ARG ASP GLN THR ASP LEU LEU GLN GLY TYR SEQRES 11 A 235 ASN THR GLU SER LEU ARG PHE TYR GLY ALA PRO HIS VAL SEQRES 12 A 235 ALA MSE LEU PHE ALA PRO ASN ASN THR GLU ALA ARG ILE SEQRES 13 A 235 ALA GLY ASP MSE GLY ILE TYR ALA GLN THR LEU MSE LEU SEQRES 14 A 235 ALA MSE THR ALA HIS GLY ILE ALA SER CYS PRO GLN ALA SEQRES 15 A 235 LEU LEU SER PHE TYR ALA ASP THR VAL ARG ALA GLU LEU SEQRES 16 A 235 GLY VAL GLU ASN ARG LYS LEU LEU MSE GLY ILE SER PHE SEQRES 17 A 235 GLY TYR ALA ASP ASP THR ALA ALA VAL ASN GLY VAL ARG SEQRES 18 A 235 ILE PRO ARG ALA GLY LEU SER GLU THR THR ARG PHE SER SEQRES 19 A 235 ARG SEQRES 1 B 235 GLY MSE SER VAL PRO THR LEU PRO THR GLY PRO THR VAL SEQRES 2 B 235 ASP LEU ALA GLN ALA ALA GLU ARG LEU ILE LYS GLY ARG SEQRES 3 B 235 ARG ALA VAL ARG ALA PHE ARG PRO ASP GLU VAL PRO GLU SEQRES 4 B 235 GLU THR MSE ARG ALA VAL PHE GLU LEU ALA GLY HIS ALA SEQRES 5 B 235 PRO SER ASN SER ASN THR GLN PRO TRP HIS VAL GLU VAL SEQRES 6 B 235 VAL SER GLY ALA ALA ARG ASP ARG LEU ALA GLU ALA LEU SEQRES 7 B 235 VAL THR ALA HIS ALA GLU GLU ARG VAL THR VAL ASP PHE SEQRES 8 B 235 PRO TYR ARG GLU GLY LEU PHE GLN GLY VAL LEU GLN GLU SEQRES 9 B 235 ARG ARG ALA ASP PHE GLY SER ARG LEU TYR ALA ALA LEU SEQRES 10 B 235 GLY ILE ALA ARG ASP GLN THR ASP LEU LEU GLN GLY TYR SEQRES 11 B 235 ASN THR GLU SER LEU ARG PHE TYR GLY ALA PRO HIS VAL SEQRES 12 B 235 ALA MSE LEU PHE ALA PRO ASN ASN THR GLU ALA ARG ILE SEQRES 13 B 235 ALA GLY ASP MSE GLY ILE TYR ALA GLN THR LEU MSE LEU SEQRES 14 B 235 ALA MSE THR ALA HIS GLY ILE ALA SER CYS PRO GLN ALA SEQRES 15 B 235 LEU LEU SER PHE TYR ALA ASP THR VAL ARG ALA GLU LEU SEQRES 16 B 235 GLY VAL GLU ASN ARG LYS LEU LEU MSE GLY ILE SER PHE SEQRES 17 B 235 GLY TYR ALA ASP ASP THR ALA ALA VAL ASN GLY VAL ARG SEQRES 18 B 235 ILE PRO ARG ALA GLY LEU SER GLU THR THR ARG PHE SER SEQRES 19 B 235 ARG MODRES 2WZV MSE A 41 MET SELENOMETHIONINE MODRES 2WZV MSE A 144 MET SELENOMETHIONINE MODRES 2WZV MSE A 159 MET SELENOMETHIONINE MODRES 2WZV MSE A 167 MET SELENOMETHIONINE MODRES 2WZV MSE A 170 MET SELENOMETHIONINE MODRES 2WZV MSE A 203 MET SELENOMETHIONINE MODRES 2WZV MSE B 41 MET SELENOMETHIONINE MODRES 2WZV MSE B 144 MET SELENOMETHIONINE MODRES 2WZV MSE B 159 MET SELENOMETHIONINE MODRES 2WZV MSE B 167 MET SELENOMETHIONINE MODRES 2WZV MSE B 170 MET SELENOMETHIONINE MODRES 2WZV MSE B 203 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 144 8 HET MSE A 159 8 HET MSE A 167 8 HET MSE A 170 8 HET MSE A 203 13 HET MSE B 41 8 HET MSE B 144 8 HET MSE B 159 8 HET MSE B 167 8 HET MSE B 170 8 HET MSE B 203 13 HET FMN A 801 31 HET FMN B 801 31 HET PO4 A1235 5 HET PO4 B1235 5 HET PO4 B1236 5 HET GOL A1236 6 HET GOL A1237 6 HET GOL B1237 6 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 4 FMN 2(C17 H21 N4 O9 P) FORMUL 5 PO4 3(O4 P 3-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 MSE 12(C5 H11 N O2 SE) FORMUL 8 HOH *359(H2 O) HELIX 1 1 ASP A 13 ARG A 25 1 13 HELIX 2 2 PRO A 37 GLY A 49 1 13 HELIX 3 3 SER A 53 THR A 57 5 5 HELIX 4 4 SER A 66 GLU A 83 1 18 HELIX 5 5 GLN A 98 GLY A 117 1 20 HELIX 6 6 GLN A 122 ARG A 135 1 14 HELIX 7 7 PHE A 136 ALA A 139 5 4 HELIX 8 8 GLU A 152 HIS A 173 1 22 HELIX 9 9 ALA A 181 PHE A 185 5 5 HELIX 10 10 TYR A 186 GLY A 195 1 10 HELIX 11 11 ALA A 214 VAL A 219 5 6 HELIX 12 12 GLY A 225 THR A 229 1 5 HELIX 13 13 ASP B 13 ARG B 25 1 13 HELIX 14 14 PRO B 37 GLY B 49 1 13 HELIX 15 15 SER B 53 THR B 57 5 5 HELIX 16 16 SER B 66 GLU B 83 1 18 HELIX 17 17 GLY B 99 GLY B 117 1 19 HELIX 18 18 GLN B 122 ARG B 135 1 14 HELIX 19 19 PHE B 136 ALA B 139 5 4 HELIX 20 20 GLU B 152 HIS B 173 1 22 HELIX 21 21 ALA B 181 PHE B 185 5 5 HELIX 22 22 TYR B 186 GLY B 195 1 10 HELIX 23 23 ALA B 214 VAL B 219 5 6 HELIX 24 24 GLY B 225 THR B 229 1 5 SHEET 1 AA 5 ALA A 176 GLN A 180 0 SHEET 2 AA 5 ARG A 199 GLY A 208 -1 O GLY A 204 N GLN A 180 SHEET 3 AA 5 HIS A 141 PRO A 148 -1 O HIS A 141 N PHE A 207 SHEET 4 AA 5 HIS A 61 VAL A 65 -1 O HIS A 61 N PHE A 146 SHEET 5 AA 5 THR B 230 SER B 233 1 O ARG B 231 N VAL A 64 SHEET 1 AB 5 THR A 230 SER A 233 0 SHEET 2 AB 5 HIS B 61 VAL B 65 1 O VAL B 62 N ARG A 231 SHEET 3 AB 5 HIS B 141 ALA B 147 -1 O VAL B 142 N VAL B 65 SHEET 4 AB 5 LYS B 200 GLY B 208 -1 O LYS B 200 N ALA B 147 SHEET 5 AB 5 ALA B 176 GLN B 180 -1 O ALA B 176 N GLY B 208 LINK C THR A 40 N MSE A 41 1555 1555 1.35 LINK C MSE A 41 N ARG A 42 1555 1555 1.34 LINK C ALA A 143 N MSE A 144 1555 1555 1.34 LINK C MSE A 144 N LEU A 145 1555 1555 1.34 LINK C ASP A 158 N MSE A 159 1555 1555 1.35 LINK C MSE A 159 N GLY A 160 1555 1555 1.35 LINK C LEU A 166 N MSE A 167 1555 1555 1.35 LINK C MSE A 167 N LEU A 168 1555 1555 1.34 LINK C ALA A 169 N MSE A 170 1555 1555 1.36 LINK C MSE A 170 N THR A 171 1555 1555 1.35 LINK C LEU A 202 N MSE A 203 1555 1555 1.35 LINK C MSE A 203 N GLY A 204 1555 1555 1.32 LINK C THR B 40 N MSE B 41 1555 1555 1.35 LINK C MSE B 41 N ARG B 42 1555 1555 1.34 LINK C ALA B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N LEU B 145 1555 1555 1.33 LINK C ASP B 158 N MSE B 159 1555 1555 1.35 LINK C MSE B 159 N GLY B 160 1555 1555 1.34 LINK C LEU B 166 N MSE B 167 1555 1555 1.34 LINK C MSE B 167 N LEU B 168 1555 1555 1.34 LINK C ALA B 169 N MSE B 170 1555 1555 1.34 LINK C MSE B 170 N THR B 171 1555 1555 1.33 LINK C LEU B 202 N MSE B 203 1555 1555 1.33 LINK C MSE B 203 N GLY B 204 1555 1555 1.32 SITE 1 AC1 26 ARG A 25 ARG A 26 ALA A 27 ARG A 29 SITE 2 AC1 26 PHE A 108 TYR A 137 PRO A 179 GLN A 180 SITE 3 AC1 26 ALA A 181 LEU A 182 MSE A 203 ILE A 221 SITE 4 AC1 26 ARG A 223 HOH A2015 HOH A2109 HOH A2171 SITE 5 AC1 26 HOH A2172 HOH A2173 HOH A2174 PRO B 52 SITE 6 AC1 26 SER B 53 ASN B 54 ASN B 56 ASP B 158 SITE 7 AC1 26 ILE B 161 PO4 B1235 SITE 1 AC2 22 PRO A 52 SER A 53 ASN A 54 ASP A 158 SITE 2 AC2 22 ILE A 161 PO4 A1235 ARG B 25 ARG B 26 SITE 3 AC2 22 ALA B 27 ARG B 29 PHE B 108 TYR B 137 SITE 4 AC2 22 PRO B 179 GLN B 180 ALA B 181 LEU B 182 SITE 5 AC2 22 ILE B 221 ARG B 223 HOH B2094 HOH B2100 SITE 6 AC2 22 HOH B2173 HOH B2174 SITE 1 AC3 7 SER A 55 HOH A2175 HOH A2176 HOH A2177 SITE 2 AC3 7 HOH A2178 PHE B 108 FMN B 801 SITE 1 AC4 6 PHE A 108 FMN A 801 SER B 55 HOH B2175 SITE 2 AC4 6 HOH B2176 HOH B2177 SITE 1 AC5 6 ARG B 32 PRO B 33 ASP B 34 HIS B 173 SITE 2 AC5 6 HOH B2178 HOH B2179 SITE 1 AC6 7 GLY A 24 ARG A 26 THR A 171 ILE A 175 SITE 2 AC6 7 HOH A2013 HOH A2179 HOH A2180 SITE 1 AC7 3 ARG A 234 ALA B 68 ARG B 72 SITE 1 AC8 8 PRO A 91 THR A 151 GLU A 152 ARG B 93 SITE 2 AC8 8 GLU B 152 ALA B 153 HOH B2074 HOH B2110 CRYST1 85.190 114.971 118.901 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008410 0.00000