PDB Short entry for 2WZW HEADER OXIDOREDUCTASE 03-DEC-09 2WZW TITLE CRYSTAL STRUCTURE OF THE FMN-DEPENDENT NITROREDUCTASE NFNB FROM TITLE 2 MYCOBACTERIUM SMEGMATIS IN COMPLEX WITH NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: NFNB PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NITROREDUCTASE NFNB; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS NITROREDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.BELLINZONI,G.MANINA,G.RICCARDI,P.M.ALZARI REVDAT 4 20-DEC-23 2WZW 1 REMARK LINK REVDAT 3 25-MAY-11 2WZW 1 JRNL REVDAT 2 28-JUL-10 2WZW 1 JRNL REVDAT 1 14-JUL-10 2WZW 0 JRNL AUTH G.MANINA,M.BELLINZONI,M.R.PASCA,J.NERES,A.MILANO, JRNL AUTH 2 A.L.RIBEIRO,S.BURONI,H.SKOVIEROVA,P.DIANISKOVA,K.MIKUSOVA, JRNL AUTH 3 J.MARAK,V.MAKAROV,D.GIGANTI,A.HAOUZ,A.P.LUCARELLI, JRNL AUTH 4 G.DEGIACOMI,A.PIAZZA,L.R.CHIARELLI,E.DE ROSSI,E.SALINA, JRNL AUTH 5 S.T.COLE,P.M.ALZARI,G.RICCARDI JRNL TITL BIOLOGICAL AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 MYCOBACTERIUM SMEGMATIS NITROREDUCTASE NFNB, AND ITS ROLE IN JRNL TITL 3 BENZOTHIAZINONE RESISTANCE JRNL REF MOL.MICROBIOL. V. 77 1172 2010 JRNL REFN ISSN 0950-382X JRNL PMID 20624223 JRNL DOI 10.1111/J.1365-2958.2010.07277.X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2795 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.85 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4035 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1909 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3830 REMARK 3 BIN R VALUE (WORKING SET) : 0.1901 REMARK 3 BIN FREE R VALUE : 0.2057 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.08 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 205 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 125 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.19190 REMARK 3 B22 (A**2) : -1.09640 REMARK 3 B33 (A**2) : -3.09540 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.164 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.089 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.085 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.086 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.083 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3736 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5110 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1320 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 585 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3670 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 477 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4532 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 13:91) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0290 -84.7360 -29.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.0449 T22: 0.0674 REMARK 3 T33: 0.0738 T12: 0.0043 REMARK 3 T13: -0.0044 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 1.1453 L22: 0.6417 REMARK 3 L33: 0.5020 L12: -0.1957 REMARK 3 L13: -0.0699 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: -0.0044 S12: 0.1686 S13: 0.2484 REMARK 3 S21: -0.0571 S22: -0.0281 S23: 0.0441 REMARK 3 S31: -0.0699 S32: -0.0504 S33: 0.0325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 92:119) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1250 -75.3020 -19.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.0417 REMARK 3 T33: 0.3029 T12: -0.0243 REMARK 3 T13: -0.0296 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 3.4578 L22: 0.9568 REMARK 3 L33: 2.3598 L12: -0.3686 REMARK 3 L13: 0.3138 L23: -0.1156 REMARK 3 S TENSOR REMARK 3 S11: -0.1195 S12: -0.0136 S13: 0.5813 REMARK 3 S21: 0.1067 S22: -0.0957 S23: -0.0353 REMARK 3 S31: -0.2024 S32: 0.1043 S33: 0.2152 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 120:132) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7700 -63.7930 -26.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1730 REMARK 3 T33: 0.5238 T12: 0.0116 REMARK 3 T13: -0.0573 T23: -0.0997 REMARK 3 L TENSOR REMARK 3 L11: 21.8283 L22: 14.2809 REMARK 3 L33: 0.0000 L12: 15.2698 REMARK 3 L13: 1.0611 L23: 0.5019 REMARK 3 S TENSOR REMARK 3 S11: 0.1363 S12: -1.5161 S13: 1.6707 REMARK 3 S21: 0.5351 S22: -0.3874 S23: 0.3362 REMARK 3 S31: -0.2793 S32: -0.1846 S33: 0.2511 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 133:234) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8580 -84.6210 -24.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.0217 REMARK 3 T33: 0.0652 T12: -0.0028 REMARK 3 T13: 0.0086 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.3193 L22: 0.5782 REMARK 3 L33: 0.4200 L12: -0.2588 REMARK 3 L13: 0.4028 L23: -0.2108 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: 0.0749 S13: 0.2024 REMARK 3 S21: -0.0120 S22: -0.0140 S23: -0.0127 REMARK 3 S31: -0.0245 S32: 0.0028 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 12:91) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8650 -103.5880 -18.7010 REMARK 3 T TENSOR REMARK 3 T11: 0.0493 T22: 0.0426 REMARK 3 T33: 0.0431 T12: 0.0075 REMARK 3 T13: 0.0164 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.5685 L22: 0.9915 REMARK 3 L33: 0.5085 L12: -0.3736 REMARK 3 L13: 0.0198 L23: 0.1442 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0195 S13: -0.0335 REMARK 3 S21: 0.0608 S22: 0.0235 S23: -0.0726 REMARK 3 S31: 0.1170 S32: 0.0528 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 92:98) REMARK 3 ORIGIN FOR THE GROUP (A): -32.6970 -95.0920 -5.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.4435 REMARK 3 T33: 0.2798 T12: 0.0287 REMARK 3 T13: 0.0247 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 8.7539 REMARK 3 L33: 32.9735 L12: 0.4088 REMARK 3 L13: 0.5954 L23: -7.2342 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: -0.0174 S13: -0.0551 REMARK 3 S21: 0.3576 S22: -0.1707 S23: -0.5257 REMARK 3 S31: 0.0364 S32: -3.7867 S33: 0.0776 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 99:127) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5080 -112.3970 -12.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1488 REMARK 3 T33: 0.1003 T12: -0.0429 REMARK 3 T13: 0.0749 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.0953 L22: 4.3734 REMARK 3 L33: 2.3245 L12: -0.4684 REMARK 3 L13: 0.1901 L23: -1.8325 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: -0.2310 S13: -0.1611 REMARK 3 S21: 0.3996 S22: 0.1277 S23: 0.4171 REMARK 3 S31: 0.0720 S32: -0.1489 S33: -0.0367 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 128:234) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1430 -101.9540 -16.8600 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.0249 REMARK 3 T33: 0.0164 T12: -0.0035 REMARK 3 T13: 0.0096 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.7275 L22: 0.9167 REMARK 3 L33: 0.3338 L12: -0.3285 REMARK 3 L13: -0.0503 L23: -0.0823 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0025 S13: 0.0216 REMARK 3 S21: 0.0414 S22: 0.0147 S23: 0.0175 REMARK 3 S31: 0.0511 S32: 0.0078 S33: 0.0027 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORDS CONTAIN ISOTROPIC EQUIVALENTS OF THE SUM REMARK 3 OF TLS AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS REMARK 3 AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2WZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290041924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55133 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 59.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2WZV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG8000, 6% (V/V) REMARK 280 ISOPROPANOL, 200 MM NH4H2PO4, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.79000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.79000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.80500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 59.79000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.77500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.79000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A1236 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2160 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2181 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 LEU A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 THR B 5 REMARK 465 LEU B 6 REMARK 465 PRO B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 PRO B 10 REMARK 465 THR B 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 96 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 152 -164.04 -128.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1236 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FMN-DEPENDENT NITROREDUCTASE NFNB FROM REMARK 900 MYCOBACTERIUM SMEGMATIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST GLY RESIDUE IS A PURIFICATION TAG LEFTOVER DBREF 2WZW A 1 234 UNP A0R6D0 A0R6D0_MYCS2 1 234 DBREF 2WZW B 1 234 UNP A0R6D0 A0R6D0_MYCS2 1 234 SEQADV 2WZW GLY A 0 UNP A0R6D0 EXPRESSION TAG SEQADV 2WZW GLY B 0 UNP A0R6D0 EXPRESSION TAG SEQRES 1 A 235 GLY MSE SER VAL PRO THR LEU PRO THR GLY PRO THR VAL SEQRES 2 A 235 ASP LEU ALA GLN ALA ALA GLU ARG LEU ILE LYS GLY ARG SEQRES 3 A 235 ARG ALA VAL ARG ALA PHE ARG PRO ASP GLU VAL PRO GLU SEQRES 4 A 235 GLU THR MSE ARG ALA VAL PHE GLU LEU ALA GLY HIS ALA SEQRES 5 A 235 PRO SER ASN SER ASN THR GLN PRO TRP HIS VAL GLU VAL SEQRES 6 A 235 VAL SER GLY ALA ALA ARG ASP ARG LEU ALA GLU ALA LEU SEQRES 7 A 235 VAL THR ALA HIS ALA GLU GLU ARG VAL THR VAL ASP PHE SEQRES 8 A 235 PRO TYR ARG GLU GLY LEU PHE GLN GLY VAL LEU GLN GLU SEQRES 9 A 235 ARG ARG ALA ASP PHE GLY SER ARG LEU TYR ALA ALA LEU SEQRES 10 A 235 GLY ILE ALA ARG ASP GLN THR ASP LEU LEU GLN GLY TYR SEQRES 11 A 235 ASN THR GLU SER LEU ARG PHE TYR GLY ALA PRO HIS VAL SEQRES 12 A 235 ALA MSE LEU PHE ALA PRO ASN ASN THR GLU ALA ARG ILE SEQRES 13 A 235 ALA GLY ASP MSE GLY ILE TYR ALA GLN THR LEU MSE LEU SEQRES 14 A 235 ALA MSE THR ALA HIS GLY ILE ALA SER CYS PRO GLN ALA SEQRES 15 A 235 LEU LEU SER PHE TYR ALA ASP THR VAL ARG ALA GLU LEU SEQRES 16 A 235 GLY VAL GLU ASN ARG LYS LEU LEU MSE GLY ILE SER PHE SEQRES 17 A 235 GLY TYR ALA ASP ASP THR ALA ALA VAL ASN GLY VAL ARG SEQRES 18 A 235 ILE PRO ARG ALA GLY LEU SER GLU THR THR ARG PHE SER SEQRES 19 A 235 ARG SEQRES 1 B 235 GLY MSE SER VAL PRO THR LEU PRO THR GLY PRO THR VAL SEQRES 2 B 235 ASP LEU ALA GLN ALA ALA GLU ARG LEU ILE LYS GLY ARG SEQRES 3 B 235 ARG ALA VAL ARG ALA PHE ARG PRO ASP GLU VAL PRO GLU SEQRES 4 B 235 GLU THR MSE ARG ALA VAL PHE GLU LEU ALA GLY HIS ALA SEQRES 5 B 235 PRO SER ASN SER ASN THR GLN PRO TRP HIS VAL GLU VAL SEQRES 6 B 235 VAL SER GLY ALA ALA ARG ASP ARG LEU ALA GLU ALA LEU SEQRES 7 B 235 VAL THR ALA HIS ALA GLU GLU ARG VAL THR VAL ASP PHE SEQRES 8 B 235 PRO TYR ARG GLU GLY LEU PHE GLN GLY VAL LEU GLN GLU SEQRES 9 B 235 ARG ARG ALA ASP PHE GLY SER ARG LEU TYR ALA ALA LEU SEQRES 10 B 235 GLY ILE ALA ARG ASP GLN THR ASP LEU LEU GLN GLY TYR SEQRES 11 B 235 ASN THR GLU SER LEU ARG PHE TYR GLY ALA PRO HIS VAL SEQRES 12 B 235 ALA MSE LEU PHE ALA PRO ASN ASN THR GLU ALA ARG ILE SEQRES 13 B 235 ALA GLY ASP MSE GLY ILE TYR ALA GLN THR LEU MSE LEU SEQRES 14 B 235 ALA MSE THR ALA HIS GLY ILE ALA SER CYS PRO GLN ALA SEQRES 15 B 235 LEU LEU SER PHE TYR ALA ASP THR VAL ARG ALA GLU LEU SEQRES 16 B 235 GLY VAL GLU ASN ARG LYS LEU LEU MSE GLY ILE SER PHE SEQRES 17 B 235 GLY TYR ALA ASP ASP THR ALA ALA VAL ASN GLY VAL ARG SEQRES 18 B 235 ILE PRO ARG ALA GLY LEU SER GLU THR THR ARG PHE SER SEQRES 19 B 235 ARG MODRES 2WZW MSE A 41 MET SELENOMETHIONINE MODRES 2WZW MSE A 144 MET SELENOMETHIONINE MODRES 2WZW MSE A 159 MET SELENOMETHIONINE MODRES 2WZW MSE A 167 MET SELENOMETHIONINE MODRES 2WZW MSE A 170 MET SELENOMETHIONINE MODRES 2WZW MSE A 203 MET SELENOMETHIONINE MODRES 2WZW MSE B 41 MET SELENOMETHIONINE MODRES 2WZW MSE B 144 MET SELENOMETHIONINE MODRES 2WZW MSE B 159 MET SELENOMETHIONINE MODRES 2WZW MSE B 167 MET SELENOMETHIONINE MODRES 2WZW MSE B 170 MET SELENOMETHIONINE MODRES 2WZW MSE B 203 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 144 8 HET MSE A 159 8 HET MSE A 167 8 HET MSE A 170 8 HET MSE A 203 13 HET MSE B 41 8 HET MSE B 144 8 HET MSE B 159 8 HET MSE B 167 8 HET MSE B 170 8 HET MSE B 203 13 HET FMN A 801 31 HET NDP A 901 48 HET PO4 A1235 5 HET PO4 A1236 5 HET FMN B 801 31 HET PO4 B1235 5 HETNAM MSE SELENOMETHIONINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 NDP C21 H30 N7 O17 P3 FORMUL 5 PO4 3(O4 P 3-) FORMUL 9 HOH *373(H2 O) HELIX 1 1 ASP A 13 ARG A 25 1 13 HELIX 2 2 PRO A 37 GLY A 49 1 13 HELIX 3 3 SER A 53 THR A 57 5 5 HELIX 4 4 GLY A 67 GLU A 83 1 17 HELIX 5 5 GLN A 98 GLY A 117 1 20 HELIX 6 6 GLN A 122 ARG A 135 1 14 HELIX 7 7 PHE A 136 ALA A 139 5 4 HELIX 8 8 GLU A 152 HIS A 173 1 22 HELIX 9 9 ALA A 181 PHE A 185 5 5 HELIX 10 10 TYR A 186 GLY A 195 1 10 HELIX 11 11 ALA A 214 VAL A 219 5 6 HELIX 12 12 GLY A 225 THR A 229 1 5 HELIX 13 13 ASP B 13 ARG B 25 1 13 HELIX 14 14 PRO B 37 GLY B 49 1 13 HELIX 15 15 SER B 53 THR B 57 5 5 HELIX 16 16 SER B 66 GLU B 83 1 18 HELIX 17 17 GLY B 99 GLY B 117 1 19 HELIX 18 18 GLN B 122 ARG B 135 1 14 HELIX 19 19 PHE B 136 ALA B 139 5 4 HELIX 20 20 GLU B 152 HIS B 173 1 22 HELIX 21 21 ALA B 181 PHE B 185 5 5 HELIX 22 22 TYR B 186 GLY B 195 1 10 HELIX 23 23 ALA B 214 VAL B 219 5 6 HELIX 24 24 GLY B 225 THR B 229 1 5 SHEET 1 AA 5 ALA A 176 GLN A 180 0 SHEET 2 AA 5 ARG A 199 GLY A 208 -1 O GLY A 204 N GLN A 180 SHEET 3 AA 5 HIS A 141 PRO A 148 -1 O HIS A 141 N PHE A 207 SHEET 4 AA 5 HIS A 61 SER A 66 -1 O HIS A 61 N PHE A 146 SHEET 5 AA 5 THR B 230 SER B 233 1 O ARG B 231 N VAL A 64 SHEET 1 AB 5 THR A 230 SER A 233 0 SHEET 2 AB 5 HIS B 61 VAL B 65 1 O VAL B 62 N ARG A 231 SHEET 3 AB 5 HIS B 141 ALA B 147 -1 O VAL B 142 N VAL B 65 SHEET 4 AB 5 LYS B 200 GLY B 208 -1 O LYS B 200 N ALA B 147 SHEET 5 AB 5 ALA B 176 GLN B 180 -1 O ALA B 176 N GLY B 208 LINK C THR A 40 N MSE A 41 1555 1555 1.35 LINK C MSE A 41 N ARG A 42 1555 1555 1.35 LINK C ALA A 143 N MSE A 144 1555 1555 1.35 LINK C MSE A 144 N LEU A 145 1555 1555 1.35 LINK C ASP A 158 N MSE A 159 1555 1555 1.35 LINK C MSE A 159 N GLY A 160 1555 1555 1.35 LINK C LEU A 166 N MSE A 167 1555 1555 1.34 LINK C MSE A 167 N LEU A 168 1555 1555 1.35 LINK C ALA A 169 N MSE A 170 1555 1555 1.36 LINK C MSE A 170 N THR A 171 1555 1555 1.35 LINK C LEU A 202 N MSE A 203 1555 1555 1.36 LINK C MSE A 203 N GLY A 204 1555 1555 1.32 LINK C THR B 40 N MSE B 41 1555 1555 1.36 LINK C MSE B 41 N ARG B 42 1555 1555 1.35 LINK C ALA B 143 N MSE B 144 1555 1555 1.33 LINK C MSE B 144 N LEU B 145 1555 1555 1.34 LINK C ASP B 158 N MSE B 159 1555 1555 1.35 LINK C MSE B 159 N GLY B 160 1555 1555 1.35 LINK C LEU B 166 N MSE B 167 1555 1555 1.34 LINK C MSE B 167 N LEU B 168 1555 1555 1.34 LINK C ALA B 169 N MSE B 170 1555 1555 1.35 LINK C MSE B 170 N THR B 171 1555 1555 1.35 LINK C LEU B 202 N MSE B 203 1555 1555 1.35 LINK C MSE B 203 N GLY B 204 1555 1555 1.32 SITE 1 AC1 26 ARG A 25 ARG A 26 ALA A 27 ARG A 29 SITE 2 AC1 26 PHE A 108 TYR A 137 PRO A 179 GLN A 180 SITE 3 AC1 26 ALA A 181 LEU A 182 ILE A 221 ARG A 223 SITE 4 AC1 26 NDP A 901 HOH A2017 HOH A2103 HOH A2106 SITE 5 AC1 26 HOH A2171 HOH A2172 HOH A2173 PRO B 52 SITE 6 AC1 26 SER B 53 ASN B 54 ASN B 56 ASP B 158 SITE 7 AC1 26 ILE B 161 PO4 B1235 SITE 1 AC2 19 TYR A 92 ARG A 105 ALA A 106 GLY A 109 SITE 2 AC2 19 TYR A 113 ILE A 118 ALA A 119 ARG A 120 SITE 3 AC2 19 LEU A 182 PHE A 185 FMN A 801 HOH A2093 SITE 4 AC2 19 HOH A2174 HOH A2175 HOH A2176 HOH A2177 SITE 5 AC2 19 HOH A2178 SER B 55 PO4 B1235 SITE 1 AC3 24 PRO A 52 SER A 53 ASN A 54 ASP A 158 SITE 2 AC3 24 ILE A 161 PO4 A1235 ARG B 25 ARG B 26 SITE 3 AC3 24 ALA B 27 ARG B 29 PHE B 108 TYR B 137 SITE 4 AC3 24 PRO B 179 GLN B 180 ALA B 181 LEU B 182 SITE 5 AC3 24 MSE B 203 ARG B 223 HOH B2104 HOH B2183 SITE 6 AC3 24 HOH B2184 HOH B2185 HOH B2186 HOH B2187 SITE 1 AC4 7 SER A 55 HOH A2179 HOH A2180 HOH A2181 SITE 2 AC4 7 HOH A2182 PHE B 108 FMN B 801 SITE 1 AC5 6 PHE A 108 FMN A 801 NDP A 901 HOH A2177 SITE 2 AC5 6 SER B 55 HOH B2189 SITE 1 AC6 6 HIS A 61 GLU A 63 HOH A2134 HOH A2183 SITE 2 AC6 6 HOH A2184 ARG B 231 CRYST1 85.550 115.610 119.580 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011689 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008363 0.00000