PDB Short entry for 2X0S HEADER TRANSFERASE 17-DEC-09 2X0S TITLE 3.0 A RESOLUTION CRYSTAL STRUCTURE OF GLYCOSOMAL PYRUVATE PHOSPHATE TITLE 2 DIKINASE FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRUVATE PHOSPHATE DIKINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.9.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 STRAIN: ANTAT1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS KINASE, TRANSFERASE, TROPICAL PARASITE EXPDTA X-RAY DIFFRACTION AUTHOR L.W.COSENZA,F.BRINGAUD,T.BALTZ,F.M.D.VELLIEUX REVDAT 3 20-DEC-23 2X0S 1 REMARK REVDAT 2 08-MAY-19 2X0S 1 REMARK REVDAT 1 29-DEC-09 2X0S 0 SPRSDE 29-DEC-09 2X0S 1H6Z JRNL AUTH L.W.COSENZA,F.BRINGAUD,T.BALTZ,F.M.D.VELLIEUX JRNL TITL THE 3.0 A RESOLUTION CRYSTAL STRUCTURE OF GLYCOSOMAL JRNL TITL 2 PYRUVATE PHOSPHATE DIKINASE FROM TRYPANOSOMA BRUCEI JRNL REF J.MOL.BIOL. V. 318 1417 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 12083528 JRNL DOI 10.1016/S0022-2836(02)00113-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.W.COSENZA,F.BRINGAUD,T.BALTZ,F.M.D.VELLIEUX REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC REMARK 1 TITL 2 INVESTIGATION OF GLYCOSOMAL PYRUVATE PHOSPHATE DIKINASE FROM REMARK 1 TITL 3 TRYPANOSOMA BRUCEI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. D56 1688 2000 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11092947 REMARK 1 DOI 10.1107/S0907444900015298 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.BRINGAUD,D.BALTZ,T.BALTZ REMARK 1 TITL FUNCTIONAL AND MOLECULAR CHARACTERIZATION OF A GLYCOSOMAL REMARK 1 TITL 2 PPI-DEPENDENT ENZYME IN TRYPANOSOMATIDS: PYRUVATE, PHOSPHATE REMARK 1 TITL 3 DIKINASE REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 95 7963 1998 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 9653123 REMARK 1 DOI 10.1073/PNAS.95.14.7963 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.620 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 24115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9383 - 5.9670 0.98 3111 140 0.1286 0.1752 REMARK 3 2 5.9670 - 4.7483 0.99 3005 140 0.1373 0.2053 REMARK 3 3 4.7483 - 4.1516 0.99 2924 172 0.1253 0.2022 REMARK 3 4 4.1516 - 3.7736 0.98 2931 159 0.1540 0.2487 REMARK 3 5 3.7736 - 3.5040 0.98 2889 139 0.1800 0.2759 REMARK 3 6 3.5040 - 3.2980 0.95 2803 158 0.2140 0.3466 REMARK 3 7 3.2980 - 3.1332 0.92 2741 130 0.2646 0.3310 REMARK 3 8 3.1332 - 2.9971 0.87 2548 125 0.2979 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.25 REMARK 3 B_SOL : 57.10 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.18160 REMARK 3 B22 (A**2) : -1.67290 REMARK 3 B33 (A**2) : -4.88380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7077 REMARK 3 ANGLE : 1.345 9543 REMARK 3 CHIRALITY : 0.082 1045 REMARK 3 PLANARITY : 0.006 1258 REMARK 3 DIHEDRAL : 21.423 2655 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:73) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2388 47.9567 43.5576 REMARK 3 T TENSOR REMARK 3 T11: -0.0040 T22: 0.1716 REMARK 3 T33: 0.1719 T12: 0.1316 REMARK 3 T13: -0.0475 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.7338 L22: 1.7260 REMARK 3 L33: 1.0671 L12: -0.8032 REMARK 3 L13: -0.0249 L23: -0.0572 REMARK 3 S TENSOR REMARK 3 S11: -0.5428 S12: -0.7624 S13: -0.2617 REMARK 3 S21: 0.2312 S22: 0.0925 S23: -0.1433 REMARK 3 S31: 0.0192 S32: -0.0408 S33: 0.3391 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 74:218) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6451 58.0256 23.1497 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.1713 REMARK 3 T33: 0.1664 T12: 0.1068 REMARK 3 T13: -0.1266 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 0.9601 L22: 0.9597 REMARK 3 L33: 2.0306 L12: -0.5936 REMARK 3 L13: 0.1687 L23: -0.9155 REMARK 3 S TENSOR REMARK 3 S11: -0.2239 S12: 0.1209 S13: -0.0837 REMARK 3 S21: 0.0515 S22: 0.1106 S23: -0.0284 REMARK 3 S31: -0.0066 S32: -0.4667 S33: 0.0203 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 219:401) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1728 52.9578 23.7309 REMARK 3 T TENSOR REMARK 3 T11: 0.0529 T22: 0.0124 REMARK 3 T33: 0.1458 T12: -0.0051 REMARK 3 T13: -0.1102 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.8135 L22: 1.0213 REMARK 3 L33: 0.9054 L12: -0.7403 REMARK 3 L13: 0.1479 L23: 0.0054 REMARK 3 S TENSOR REMARK 3 S11: -0.0888 S12: -0.0475 S13: 0.0567 REMARK 3 S21: -0.0697 S22: 0.0507 S23: -0.0888 REMARK 3 S31: -0.0794 S32: 0.0768 S33: 0.0618 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 402:545) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0934 45.6315 -0.1830 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.2759 REMARK 3 T33: -0.1085 T12: 0.1718 REMARK 3 T13: -0.3405 T23: 0.1129 REMARK 3 L TENSOR REMARK 3 L11: 1.3774 L22: 1.9031 REMARK 3 L33: 1.9136 L12: -0.3326 REMARK 3 L13: 0.5748 L23: -0.3160 REMARK 3 S TENSOR REMARK 3 S11: 0.4086 S12: 0.2024 S13: -0.0873 REMARK 3 S21: -0.9045 S22: -0.3080 S23: 0.2890 REMARK 3 S31: 0.1142 S32: -0.0275 S33: -0.0816 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 546:652) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5835 9.6190 5.1942 REMARK 3 T TENSOR REMARK 3 T11: 0.4826 T22: 0.0353 REMARK 3 T33: 0.1318 T12: -0.4835 REMARK 3 T13: 0.5274 T23: -0.1638 REMARK 3 L TENSOR REMARK 3 L11: 0.9468 L22: 1.2480 REMARK 3 L33: 0.0059 L12: 0.4012 REMARK 3 L13: -0.0520 L23: -0.1079 REMARK 3 S TENSOR REMARK 3 S11: -0.8769 S12: 0.3206 S13: -0.0536 REMARK 3 S21: -0.4023 S22: 0.3842 S23: -0.3988 REMARK 3 S31: 0.2144 S32: -0.2390 S33: 0.2336 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 653:812) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4010 -1.4605 6.0768 REMARK 3 T TENSOR REMARK 3 T11: 0.6192 T22: 0.1554 REMARK 3 T33: 0.2276 T12: -0.4893 REMARK 3 T13: 0.3485 T23: -0.1675 REMARK 3 L TENSOR REMARK 3 L11: 1.3144 L22: 1.6275 REMARK 3 L33: 0.2020 L12: 1.0504 REMARK 3 L13: -0.4348 L23: -0.1665 REMARK 3 S TENSOR REMARK 3 S11: -0.8069 S12: 0.4343 S13: -0.4477 REMARK 3 S21: -1.1988 S22: 0.5441 S23: -0.4965 REMARK 3 S31: 0.1102 S32: -0.2283 S33: 0.1698 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 813:903) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2174 15.2196 22.1166 REMARK 3 T TENSOR REMARK 3 T11: 0.0485 T22: 0.1243 REMARK 3 T33: 0.1114 T12: -0.0500 REMARK 3 T13: -0.0413 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.6779 L22: 1.5182 REMARK 3 L33: 0.6763 L12: 0.8916 REMARK 3 L13: 0.1900 L23: -0.7416 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: -0.2323 S13: -0.0053 REMARK 3 S21: -0.3445 S22: 0.2414 S23: 0.0197 REMARK 3 S31: 0.1572 S32: -0.1375 S33: -0.0785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290042130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-00 REMARK 200 TEMPERATURE (KELVIN) : 277.0 REMARK 200 PH : 8.80 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : DW32 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.964 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : BIOMOL SCALKB2 KBAPLY CCP4 REMARK 200 TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24120 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DIK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP, 2 MICROLITER PROTEIN AND REMARK 280 2 MICROLITER PRECIPITANT SOLUTION. PROTEIN SOLUTION. 50 MG/ML, REMARK 280 20 MM IMIDAZOLE PH 7.0, 100 MM NACL, 100 MM MGCL2, 20% (V/V) REMARK 280 GLYCEROL. PRECIPITANT SOLUTION. 0.1 M BICINE PH 8.8, 1.5 % (W/V) REMARK 280 PEG 5000 MONOMETHYLETHER, 10 % (V/V) GLYCEROL, PH 8.80, VAPOR REMARK 280 DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET A 103 REMARK 465 PRO A 104 REMARK 465 GLY A 105 REMARK 465 MET A 106 REMARK 465 ALA A 904 REMARK 465 ARG A 905 REMARK 465 LYS A 906 REMARK 465 GLY A 907 REMARK 465 PHE A 908 REMARK 465 ALA A 909 REMARK 465 ALA A 910 REMARK 465 LYS A 911 REMARK 465 LEU A 912 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 511 O HOH A 2018 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 40 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 -63.02 175.55 REMARK 500 ALA A 14 97.15 67.48 REMARK 500 ASP A 15 -76.15 -22.26 REMARK 500 PRO A 43 -177.80 -62.00 REMARK 500 GLU A 59 32.39 -75.16 REMARK 500 ALA A 66 -72.15 -46.79 REMARK 500 ALA A 82 -174.28 -66.00 REMARK 500 ALA A 99 100.82 159.41 REMARK 500 ALA A 101 21.04 -56.70 REMARK 500 ASP A 108 -173.40 81.64 REMARK 500 ARG A 126 -17.77 -169.76 REMARK 500 ALA A 127 80.99 -177.31 REMARK 500 ARG A 154 -21.28 -161.39 REMARK 500 GLU A 193 21.78 -59.91 REMARK 500 LEU A 194 -65.75 -136.43 REMARK 500 PRO A 201 107.64 -44.50 REMARK 500 SER A 218 1.87 -62.08 REMARK 500 ASN A 221 132.42 -37.33 REMARK 500 ARG A 223 -0.23 -58.83 REMARK 500 LEU A 237 -73.58 102.56 REMARK 500 SER A 266 -66.97 -109.92 REMARK 500 ASN A 279 70.66 39.23 REMARK 500 GLU A 283 -51.33 128.11 REMARK 500 ARG A 290 101.28 61.32 REMARK 500 THR A 291 123.32 -37.54 REMARK 500 PRO A 319 -120.83 -61.96 REMARK 500 SER A 320 130.47 177.62 REMARK 500 MET A 346 120.81 -37.40 REMARK 500 ARG A 375 -70.21 -69.01 REMARK 500 PRO A 410 -3.20 -40.44 REMARK 500 ASN A 416 -111.47 -76.71 REMARK 500 LYS A 417 15.53 87.52 REMARK 500 PRO A 418 90.68 -66.35 REMARK 500 ILE A 419 37.88 -89.31 REMARK 500 ALA A 424 49.42 -83.13 REMARK 500 GLU A 443 -61.79 -104.92 REMARK 500 PRO A 460 5.79 -65.85 REMARK 500 ARG A 504 -87.15 -130.61 REMARK 500 LYS A 506 45.28 -76.72 REMARK 500 ASN A 511 108.46 2.94 REMARK 500 GLU A 517 22.17 19.92 REMARK 500 SER A 526 29.09 94.86 REMARK 500 LEU A 529 -158.70 -134.59 REMARK 500 ILE A 530 38.32 -140.98 REMARK 500 TYR A 531 -106.22 123.65 REMARK 500 PRO A 540 58.43 -68.99 REMARK 500 LEU A 542 43.49 28.64 REMARK 500 LYS A 543 48.35 32.73 REMARK 500 SER A 545 -79.44 -69.11 REMARK 500 MET A 590 33.97 -90.68 REMARK 500 REMARK 500 THIS ENTRY HAS 87 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AF" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. DBREF 2X0S A 0 912 UNP O76283 O76283_9TRYP 1 913 SEQRES 1 A 913 MET VAL ALA LYS LYS TRP VAL TYR TYR PHE GLY GLY GLY SEQRES 2 A 913 ASN ALA ASP GLY ASN LYS ASN MET LYS GLU LEU LEU GLY SEQRES 3 A 913 GLY LYS GLY ALA ASN LEU ALA GLU MET VAL ASN LEU GLY SEQRES 4 A 913 ILE PRO VAL PRO PRO GLY PHE THR ILE THR THR GLU ALA SEQRES 5 A 913 CYS LYS THR TYR GLN GLU THR GLU THR ILE PRO GLN GLU SEQRES 6 A 913 VAL ALA ASP GLN VAL ARG GLU ASN VAL SER ARG VAL GLU SEQRES 7 A 913 LYS GLU MET GLY ALA LYS PHE GLY ASP PRO ALA ASN PRO SEQRES 8 A 913 LEU LEU PHE SER VAL ARG SER GLY ALA ALA ALA SER MET SEQRES 9 A 913 PRO GLY MET MET ASP THR VAL LEU ASN LEU GLY LEU ASN SEQRES 10 A 913 LYS VAL THR VAL ASP ALA TRP VAL ARG ARG ALA PRO ARG SEQRES 11 A 913 LEU GLU ARG PHE VAL TYR ASP SER TYR ARG ARG PHE ILE SEQRES 12 A 913 THR MET TYR ALA ASP ILE VAL MET GLN VAL GLY ARG GLU SEQRES 13 A 913 ASP PHE GLU GLU ALA LEU SER ARG MET LYS GLU ARG ARG SEQRES 14 A 913 GLY THR LYS PHE ASP THR ASP LEU THR ALA SER ASP LEU SEQRES 15 A 913 LYS GLU LEU CYS ASP GLY TYR LEU GLU LEU PHE GLU LEU SEQRES 16 A 913 LYS THR GLY CYS SER PHE PRO GLN ASP PRO VAL MET GLN SEQRES 17 A 913 LEU PHE ALA ALA ILE LYS ALA VAL PHE ARG SER TRP GLY SEQRES 18 A 913 ASN PRO ARG ALA THR ILE TYR ARG ARG MET ASN ASN ILE SEQRES 19 A 913 THR GLY LEU LEU GLY THR ALA VAL ASN VAL GLN ALA MET SEQRES 20 A 913 VAL PHE GLY ASN ILE ASN ASP ARG SER ALA THR GLY VAL SEQRES 21 A 913 ALA PHE SER ARG SER PRO SER THR GLY GLU ASN PHE PHE SEQRES 22 A 913 PHE GLY GLU TYR LEU VAL ASN ALA GLN GLY GLU ASP VAL SEQRES 23 A 913 VAL ALA GLY ILE ARG THR PRO GLN GLN ILE ASN HIS SER SEQRES 24 A 913 LEU SER LEU ARG TRP ALA LYS ALA HIS GLY VAL GLY GLU SEQRES 25 A 913 GLU GLU ARG ARG LYS ARG TYR PRO SER MET GLU GLU ALA SEQRES 26 A 913 MET PRO GLU ASN TYR ARG LEU LEU CYS ASP VAL ARG LYS SEQRES 27 A 913 ARG LEU GLU ASN HIS TYR ARG ASP MET GLN ASP LEU GLU SEQRES 28 A 913 PHE THR VAL GLN ASP GLY ARG LEU TRP LEU LEU GLN CYS SEQRES 29 A 913 ARG ASN GLY LYS ARG THR ILE HIS ALA ALA VAL ARG ILE SEQRES 30 A 913 ALA ILE ASP MET VAL ASN GLU GLY LEU ILE SER ARG GLU SEQRES 31 A 913 GLU ALA VAL LEU ARG ILE ASP PRO TYR GLN VAL ASP HIS SEQRES 32 A 913 LEU MET HIS PRO ASN LEU GLU PRO GLY ALA GLU LYS ALA SEQRES 33 A 913 ASN LYS PRO ILE GLY ARG GLY LEU ALA ALA SER PRO GLY SEQRES 34 A 913 ALA ALA VAL GLY GLN VAL VAL PHE ASP ALA GLU SER ALA SEQRES 35 A 913 LYS GLU TRP SER GLY ARG GLY LYS LYS VAL ILE MET VAL SEQRES 36 A 913 ARG LEU GLU THR SER PRO GLU ASP LEU ALA GLY MET ASP SEQRES 37 A 913 ALA ALA CYS GLY ILE LEU THR ALA ARG GLY GLY MET THR SEQRES 38 A 913 SER HIS ALA ALA VAL VAL ALA ARG GLY MET GLY LYS CYS SEQRES 39 A 913 CYS VAL SER GLY CYS GLY ASP MET VAL ILE ARG GLY LYS SEQRES 40 A 913 SER PHE LYS LEU ASN GLY SER VAL PHE ARG GLU GLY ASP SEQRES 41 A 913 TYR ILE THR ILE ASP GLY SER LYS GLY LEU ILE TYR ALA SEQRES 42 A 913 GLY LYS LEU LYS LEU ARG SER PRO ASP LEU LYS GLY SER SEQRES 43 A 913 PHE GLN THR ILE LEU GLN TRP CYS GLN GLU MET LYS ARG SEQRES 44 A 913 LEU GLY VAL ARG THR ASN ALA ASP THR PRO ALA ASP ALA SEQRES 45 A 913 ALA LYS ALA ARG SER PHE GLY ALA GLU GLY VAL GLY LEU SEQRES 46 A 913 CYS ARG THR GLU HIS MET PHE PHE GLU GLY SER ARG ILE SEQRES 47 A 913 ASN PHE ILE ARG GLU MET ILE LEU ALA ASP SER ALA SER SEQRES 48 A 913 GLY ARG LYS ALA ALA LEU ASP LYS LEU LEU PRO ILE GLN SEQRES 49 A 913 ARG ALA ASP PHE VAL GLY ILE LEU ARG ALA MET ARG GLY SEQRES 50 A 913 LEU PRO VAL THR ILE ARG LEU LEU ASP PRO PRO LEU HIS SEQRES 51 A 913 GLU PHE VAL PRO HIS ASP ALA ALA ALA GLN PHE GLU LEU SEQRES 52 A 913 ALA GLN LYS LEU GLY MET PRO ALA GLU LYS VAL ARG ASN SEQRES 53 A 913 ARG VAL ASN ALA LEU HIS GLU LEU ASN PRO MET LEU GLY SEQRES 54 A 913 HIS ARG GLY CYS ARG LEU GLY ILE THR TYR PRO GLU ILE SEQRES 55 A 913 TYR ASN MET GLN VAL ARG ALA ILE ILE GLU ALA ALA ILE SEQRES 56 A 913 ALA VAL SER GLU GLU GLY SER SER VAL ILE PRO GLU ILE SEQRES 57 A 913 MET VAL PRO LEU VAL GLY LYS LYS GLU GLU LEU SER LEU SEQRES 58 A 913 ILE ARG GLU GLU VAL VAL LYS THR ALA GLU ALA VAL ILE SEQRES 59 A 913 THR LYS SER GLY LYS ARG VAL HIS TYR THR VAL GLY THR SEQRES 60 A 913 MET ILE GLU VAL PRO ARG ALA ALA VAL THR ALA ASP SER SEQRES 61 A 913 ILE ALA GLN LYS ALA ASP PHE PHE SER PHE GLY THR ASN SEQRES 62 A 913 ASP LEU THR GLN MET GLY CYS GLY PHE SER ARG ASP ASP SEQRES 63 A 913 ALA GLY PRO PHE LEU ARG HIS TYR GLY ASN LEU GLY ILE SEQRES 64 A 913 TYR ALA GLN ASP PRO PHE GLN SER ILE ASP GLN GLU GLY SEQRES 65 A 913 ILE GLY GLU LEU VAL ARG ILE ALA VAL THR LYS GLY ARG SEQRES 66 A 913 ARG VAL LYS PRO MET LEU LYS MET GLY ILE CYS GLY GLU SEQRES 67 A 913 HIS GLY GLY ASP PRO ALA THR ILE GLY PHE CYS HIS LYS SEQRES 68 A 913 VAL GLY LEU ASP TYR VAL SER CYS SER PRO PHE ARG VAL SEQRES 69 A 913 PRO VAL ALA ILE VAL ALA ALA ALA HIS ALA SER ILE LYS SEQRES 70 A 913 ASP ARG ARG ALA ALA MET LYS ALA ARG LYS GLY PHE ALA SEQRES 71 A 913 ALA LYS LEU FORMUL 2 HOH *36(H2 O) HELIX 1 1 MET A 20 LEU A 37 1 18 HELIX 2 2 THR A 48 GLU A 57 1 10 HELIX 3 3 PRO A 62 GLY A 81 1 20 HELIX 4 4 ASN A 116 ASP A 121 1 6 HELIX 5 5 LEU A 130 GLN A 151 1 22 HELIX 6 6 ARG A 154 GLY A 169 1 16 HELIX 7 7 PHE A 172 LEU A 176 5 5 HELIX 8 8 THR A 177 THR A 196 1 20 HELIX 9 9 ASP A 203 ASN A 221 1 19 HELIX 10 10 ASN A 221 ILE A 226 1 6 HELIX 11 11 ILE A 226 ASN A 231 1 6 HELIX 12 12 GLU A 283 GLY A 288 1 6 HELIX 13 13 ASN A 296 ALA A 306 1 11 HELIX 14 14 GLY A 310 TYR A 318 1 9 HELIX 15 15 SER A 320 MET A 325 1 6 HELIX 16 16 MET A 325 ARG A 344 1 20 HELIX 17 17 THR A 369 GLU A 383 1 15 HELIX 18 18 SER A 387 ARG A 394 1 8 HELIX 19 19 GLN A 399 MET A 404 5 6 HELIX 20 20 ASP A 437 SER A 445 1 9 HELIX 21 21 ASP A 462 ASP A 467 1 6 HELIX 22 22 SER A 481 GLY A 489 1 9 HELIX 23 23 PRO A 540 LYS A 543 5 4 HELIX 24 24 GLY A 544 LYS A 557 1 14 HELIX 25 25 THR A 567 SER A 576 1 10 HELIX 26 26 GLU A 588 PHE A 591 5 4 HELIX 27 27 SER A 595 ALA A 606 1 12 HELIX 28 28 SER A 608 LYS A 618 1 11 HELIX 29 29 LEU A 619 MET A 634 1 16 HELIX 30 30 PRO A 647 PHE A 651 5 5 HELIX 31 31 ALA A 658 ALA A 663 1 6 HELIX 32 32 ARG A 674 ALA A 679 1 6 HELIX 33 33 ASN A 684 GLY A 688 5 5 HELIX 34 34 ARG A 690 TYR A 698 1 9 HELIX 35 35 PRO A 699 GLU A 719 1 21 HELIX 36 36 LYS A 734 GLY A 757 1 24 HELIX 37 37 VAL A 770 THR A 776 1 7 HELIX 38 38 THR A 776 ALA A 781 1 6 HELIX 39 39 GLN A 782 ALA A 784 5 3 HELIX 40 40 ASN A 792 GLY A 800 1 9 HELIX 41 41 SER A 802 ASP A 805 5 4 HELIX 42 42 ALA A 806 GLY A 817 1 12 HELIX 43 43 GLY A 831 LYS A 847 1 17 HELIX 44 44 GLY A 856 GLY A 860 5 5 HELIX 45 45 ASP A 861 GLY A 872 1 12 HELIX 46 46 SER A 879 PHE A 881 5 3 HELIX 47 47 ARG A 882 ALA A 901 1 20 SHEET 1 AA 5 VAL A 6 PHE A 9 0 SHEET 2 AA 5 GLY A 44 ILE A 47 -1 O GLY A 44 N PHE A 9 SHEET 3 AA 5 ALA A 240 ALA A 245 -1 O VAL A 241 N ILE A 47 SHEET 4 AA 5 PHE A 93 GLY A 98 -1 O SER A 94 N GLN A 244 SHEET 5 AA 5 THR A 109 LEU A 113 -1 O VAL A 110 N VAL A 95 SHEET 1 AB 4 PHE A 273 VAL A 278 0 SHEET 2 AB 4 ALA A 256 PHE A 261 -1 O THR A 257 N LEU A 277 SHEET 3 AB 4 GLN A 347 GLN A 354 -1 O LEU A 349 N ALA A 260 SHEET 4 AB 4 ARG A 357 ASN A 365 -1 O ARG A 357 N GLN A 354 SHEET 1 AC 2 PRO A 406 ASN A 407 0 SHEET 2 AC 2 LYS A 536 LEU A 537 -1 O LYS A 536 N ASN A 407 SHEET 1 AD 6 LEU A 423 SER A 426 0 SHEET 2 AD 6 CYS A 494 SER A 496 -1 O CYS A 494 N SER A 426 SHEET 3 AD 6 GLY A 471 THR A 474 1 O ILE A 472 N VAL A 495 SHEET 4 AD 6 VAL A 451 ARG A 455 1 O MET A 453 N LEU A 473 SHEET 5 AD 6 ALA A 429 VAL A 435 1 O GLN A 433 N ILE A 452 SHEET 6 AD 6 ASP A 519 ILE A 523 -1 O TYR A 520 N GLY A 432 SHEET 1 AE 3 VAL A 502 ILE A 503 0 SHEET 2 AE 3 PHE A 508 LEU A 510 -1 O LYS A 509 N VAL A 502 SHEET 3 AE 3 SER A 513 PHE A 515 -1 O SER A 513 N LEU A 510 SHEET 1 AF 9 GLY A 560 ASN A 564 0 SHEET 2 AF 9 TYR A 875 CYS A 878 1 O VAL A 876 N ARG A 562 SHEET 3 AF 9 LYS A 851 ILE A 854 1 O ILE A 854 N SER A 877 SHEET 4 AF 9 PHE A 786 PHE A 789 1 O PHE A 787 N GLY A 853 SHEET 5 AF 9 THR A 763 ILE A 768 1 O THR A 766 N SER A 788 SHEET 6 AF 9 ILE A 724 VAL A 729 1 O PRO A 725 N THR A 763 SHEET 7 AF 9 PRO A 638 ARG A 642 1 O VAL A 639 N GLU A 726 SHEET 8 AF 9 VAL A 582 ARG A 586 1 O VAL A 582 N THR A 640 SHEET 9 AF 9 GLY A 560 ASN A 564 1 O THR A 563 N LEU A 584 CRYST1 121.170 153.500 65.460 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008253 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006515 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015277 0.00000