PDB Short entry for 2X42 HEADER HYDROLASE 28-JAN-10 2X42 TITLE STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN TITLE 2 COMPLEX WITH ALPHA-D-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-GLUCOSIDASE 3B; COMPND 5 EC: 3.2.1.21; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA NEAPOLITANA; SOURCE 3 ORGANISM_TAXID: 309803; SOURCE 4 STRAIN: DSM 4359; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-22B; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM) KEYWDS HYDROLASE, TIM BARREL FOLD, FIBRONECTIN TYPE III FOLD EXPDTA X-RAY DIFFRACTION AUTHOR T.POZZO,E.N.KARLSSON,D.T.LOGAN REVDAT 7 20-DEC-23 2X42 1 HETSYN REVDAT 6 29-JUL-20 2X42 1 COMPND REMARK HETNAM SITE REVDAT 5 15-MAY-19 2X42 1 REMARK REVDAT 4 17-JAN-18 2X42 1 REMARK REVDAT 3 23-MAR-10 2X42 1 JRNL REVDAT 2 16-FEB-10 2X42 1 JRNL REMARK REVDAT 1 09-FEB-10 2X42 0 JRNL AUTH T.POZZO,J.LINARES PASTEN,E.N.KARLSSON,D.T.LOGAN JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BETA-GLUCOSIDASE 3B JRNL TITL 2 FROM THERMOTOGA NEAPOLITANA: A THERMOSTABLE 3-DOMAIN JRNL TITL 3 REPRESENTATIVE OF GLYCOSIDE HYDROLASE FAMILY 3 JRNL REF J.MOL.BIOL. V. 397 724 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138890 JRNL DOI 10.1016/J.JMB.2010.01.072 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.TURNER,A.PRAMHED,E.KANDERS,M.HEDSTROM,E.N.KARLSSON, REMARK 1 AUTH 2 D.T.LOGAN REMARK 1 TITL EXPRESSION, PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 X-RAY DIFFRACTION ANALYSIS OF THERMOTOGA NEAPOLITANA REMARK 1 TITL 3 BETA-GLUCOSIDASE B. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 63 802 2007 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 17768360 REMARK 1 DOI 10.1107/S1744309107040341 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 47687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2778 - 5.3867 0.98 2851 173 0.1629 0.1757 REMARK 3 2 5.3867 - 4.2799 0.99 2799 148 0.1317 0.1849 REMARK 3 3 4.2799 - 3.7401 0.99 2774 146 0.1309 0.1545 REMARK 3 4 3.7401 - 3.3987 0.99 2757 132 0.1470 0.1887 REMARK 3 5 3.3987 - 3.1554 0.99 2753 145 0.1635 0.2079 REMARK 3 6 3.1554 - 2.9696 0.99 2721 136 0.1803 0.2232 REMARK 3 7 2.9696 - 2.8210 0.98 2731 152 0.1769 0.2423 REMARK 3 8 2.8210 - 2.6983 0.99 2695 147 0.1764 0.2229 REMARK 3 9 2.6983 - 2.5945 0.98 2694 135 0.1873 0.2432 REMARK 3 10 2.5945 - 2.5050 0.98 2685 144 0.1892 0.2514 REMARK 3 11 2.5050 - 2.4267 0.98 2679 142 0.1950 0.2904 REMARK 3 12 2.4267 - 2.3574 0.97 2664 142 0.2020 0.2749 REMARK 3 13 2.3574 - 2.2953 0.96 2602 145 0.2067 0.2842 REMARK 3 14 2.2953 - 2.2393 0.97 2643 132 0.2080 0.2685 REMARK 3 15 2.2393 - 2.1885 0.96 2634 123 0.2076 0.2361 REMARK 3 16 2.1885 - 2.1419 0.95 2612 143 0.2309 0.2496 REMARK 3 17 2.1419 - 2.0991 0.73 1991 117 0.2714 0.3244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 44.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5807 REMARK 3 ANGLE : 0.883 7853 REMARK 3 CHIRALITY : 0.063 851 REMARK 3 PLANARITY : 0.003 1026 REMARK 3 DIHEDRAL : 15.793 2171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:320) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1610 24.8398 -21.9921 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.2111 REMARK 3 T33: 0.1675 T12: -0.0436 REMARK 3 T13: 0.0028 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.6145 L22: 0.6853 REMARK 3 L33: 0.8042 L12: 0.3181 REMARK 3 L13: -0.0686 L23: 0.0052 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: 0.0194 S13: 0.0431 REMARK 3 S21: -0.1451 S22: 0.0334 S23: -0.0371 REMARK 3 S31: -0.2000 S32: 0.1215 S33: -0.0131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 321:536) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2879 12.8605 -25.4965 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.3064 REMARK 3 T33: 0.2949 T12: 0.0075 REMARK 3 T13: -0.1087 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.4775 L22: 1.2228 REMARK 3 L33: 1.5861 L12: -0.1332 REMARK 3 L13: 0.3960 L23: 0.1415 REMARK 3 S TENSOR REMARK 3 S11: -0.0506 S12: -0.0460 S13: 0.0486 REMARK 3 S21: -0.1640 S22: 0.0354 S23: 0.3947 REMARK 3 S31: -0.1135 S32: -0.3521 S33: 0.0236 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 537:599) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0243 5.8523 -8.6622 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.2348 REMARK 3 T33: 0.1945 T12: 0.0024 REMARK 3 T13: -0.0094 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.0611 L22: 0.3548 REMARK 3 L33: 0.3906 L12: -0.0771 REMARK 3 L13: -0.0258 L23: -0.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0893 S13: -0.0141 REMARK 3 S21: 0.0377 S22: 0.0256 S23: 0.1087 REMARK 3 S31: 0.0292 S32: -0.1290 S33: -0.0204 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 600:721) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0260 -8.2781 -20.3890 REMARK 3 T TENSOR REMARK 3 T11: 0.2389 T22: 0.2531 REMARK 3 T33: 0.1838 T12: 0.0162 REMARK 3 T13: 0.0055 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.4544 L22: 0.9695 REMARK 3 L33: 0.5058 L12: -0.4307 REMARK 3 L13: 0.0930 L23: -0.5863 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: -0.0108 S13: -0.1644 REMARK 3 S21: -0.1610 S22: -0.0172 S23: -0.0535 REMARK 3 S31: 0.2617 S32: 0.1766 S33: -0.0250 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0379 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : MULTILAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH SX-165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47706 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 29.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC, PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 2X40 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3-5 MG/ML PROTEIN, 16-18 % (V/V) PEG REMARK 280 3350, 0.2 M NABR, 90 MM BIS-TRIS PROPANE PH 7.4, 20C, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.08000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.08000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.82500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.08000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.82500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.08000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 242 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 418 REMARK 465 SER A 419 REMARK 465 TRP A 420 REMARK 465 GLY A 421 REMARK 465 THR A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 29 -138.18 58.14 REMARK 500 MET A 120 28.32 -150.42 REMARK 500 VAL A 176 -36.52 -133.78 REMARK 500 THR A 270 -18.37 -48.83 REMARK 500 ASN A 317 17.84 58.96 REMARK 500 ASN A 341 84.73 -153.44 REMARK 500 GLU A 362 59.28 -91.29 REMARK 500 ASN A 431 49.94 -105.20 REMARK 500 ASP A 468 -100.46 -126.11 REMARK 500 TRP A 519 -135.31 47.59 REMARK 500 ASN A 566 64.12 -157.81 REMARK 500 ASP A 575 -131.92 61.64 REMARK 500 ASN A 704 74.94 -119.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X40 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 2X41 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLUCOSE REMARK 900 RELATED ID: 2WT6 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 2WT3 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH GLUCOSE : A THERMOSTABLE 3-DOMAIN REPRESENTATIVE OF REMARK 900 GLYCOSIDE HYDROLASE FAMILY 3 REMARK 900 RELATED ID: 2WT5 RELATED DB: PDB REMARK 900 STRUCTURAL OF BETA-GLUCOSIDASE 3B FROM THERMOTOGA NEAPOLITANA IN REMARK 900 COMPLEX WITH ALPHA- D-GLUCOSE DBREF 2X42 A 1 721 UNP Q0GC07 Q0GC07_THENN 1 721 SEQADV 2X42 ALA A 242 UNP Q0GC07 ASP 242 ENGINEERED MUTATION SEQRES 1 A 721 MET GLU LYS VAL ASN GLU ILE LEU SER GLN LEU THR LEU SEQRES 2 A 721 GLU GLU LYS VAL LYS LEU VAL VAL GLY VAL GLY LEU PRO SEQRES 3 A 721 GLY LEU PHE GLY ASN PRO HIS SER ARG VAL ALA GLY ALA SEQRES 4 A 721 ALA GLY GLU THR HIS PRO VAL PRO ARG VAL GLY LEU PRO SEQRES 5 A 721 ALA PHE VAL LEU ALA ASP GLY PRO ALA GLY LEU ARG ILE SEQRES 6 A 721 ASN PRO THR ARG GLU ASN ASP GLU ASN THR TYR TYR THR SEQRES 7 A 721 THR ALA PHE PRO VAL GLU ILE MET LEU ALA SER THR TRP SEQRES 8 A 721 ASN ARG GLU LEU LEU GLU GLU VAL GLY LYS ALA MET GLY SEQRES 9 A 721 GLU GLU VAL ARG GLU TYR GLY VAL ASP VAL LEU LEU ALA SEQRES 10 A 721 PRO ALA MET ASN ILE HIS ARG ASN PRO LEU CYS GLY ARG SEQRES 11 A 721 ASN PHE GLU TYR TYR SER GLU ASP PRO VAL LEU SER GLY SEQRES 12 A 721 GLU MET ALA SER SER PHE VAL LYS GLY VAL GLN SER GLN SEQRES 13 A 721 GLY VAL GLY ALA CYS ILE LYS HIS PHE VAL ALA ASN ASN SEQRES 14 A 721 GLN GLU THR ASN ARG MET VAL VAL ASP THR ILE VAL SER SEQRES 15 A 721 GLU ARG ALA LEU ARG GLU ILE TYR LEU ARG GLY PHE GLU SEQRES 16 A 721 ILE ALA VAL LYS LYS SER LYS PRO TRP SER VAL MET SER SEQRES 17 A 721 ALA TYR ASN LYS LEU ASN GLY LYS TYR CYS SER GLN ASN SEQRES 18 A 721 GLU TRP LEU LEU LYS LYS VAL LEU ARG GLU GLU TRP GLY SEQRES 19 A 721 PHE GLU GLY PHE VAL MET SER ALA TRP TYR ALA GLY ASP SEQRES 20 A 721 ASN PRO VAL GLU GLN LEU LYS ALA GLY ASN ASP LEU ILE SEQRES 21 A 721 MET PRO GLY LYS ALA TYR GLN VAL ASN THR GLU ARG ARG SEQRES 22 A 721 ASP GLU ILE GLU GLU ILE MET GLU ALA LEU LYS GLU GLY SEQRES 23 A 721 LYS LEU SER GLU GLU VAL LEU ASP GLU CYS VAL ARG ASN SEQRES 24 A 721 ILE LEU LYS VAL LEU VAL ASN ALA PRO SER PHE LYS ASN SEQRES 25 A 721 TYR ARG TYR SER ASN LYS PRO ASP LEU GLU LYS HIS ALA SEQRES 26 A 721 LYS VAL ALA TYR GLU ALA GLY ALA GLU GLY VAL VAL LEU SEQRES 27 A 721 LEU ARG ASN GLU GLU ALA LEU PRO LEU SER GLU ASN SER SEQRES 28 A 721 LYS ILE ALA LEU PHE GLY THR GLY GLN ILE GLU THR ILE SEQRES 29 A 721 LYS GLY GLY THR GLY SER GLY ASP THR HIS PRO ARG TYR SEQRES 30 A 721 ALA ILE SER ILE LEU GLU GLY ILE LYS GLU ARG GLY LEU SEQRES 31 A 721 ASN PHE ASP GLU GLU LEU ALA LYS THR TYR GLU ASP TYR SEQRES 32 A 721 ILE LYS LYS MET ARG GLU THR GLU GLU TYR LYS PRO ARG SEQRES 33 A 721 ARG ASP SER TRP GLY THR ILE ILE LYS PRO LYS LEU PRO SEQRES 34 A 721 GLU ASN PHE LEU SER GLU LYS GLU ILE HIS LYS LEU ALA SEQRES 35 A 721 LYS LYS ASN ASP VAL ALA VAL ILE VAL ILE SER ARG ILE SEQRES 36 A 721 SER GLY GLU GLY TYR ASP ARG LYS PRO VAL LYS GLY ASP SEQRES 37 A 721 PHE TYR LEU SER ASP ASP GLU THR ASP LEU ILE LYS THR SEQRES 38 A 721 VAL SER ARG GLU PHE HIS GLU GLN GLY LYS LYS VAL ILE SEQRES 39 A 721 VAL LEU LEU ASN ILE GLY SER PRO VAL GLU VAL VAL SER SEQRES 40 A 721 TRP ARG ASP LEU VAL ASP GLY ILE LEU LEU VAL TRP GLN SEQRES 41 A 721 ALA GLY GLN GLU THR GLY ARG ILE VAL ALA ASP VAL LEU SEQRES 42 A 721 THR GLY ARG ILE ASN PRO SER GLY LYS LEU PRO THR THR SEQRES 43 A 721 PHE PRO ARG ASP TYR SER ASP VAL PRO SER TRP THR PHE SEQRES 44 A 721 PRO GLY GLU PRO LYS ASP ASN PRO GLN LYS VAL VAL TYR SEQRES 45 A 721 GLU GLU ASP ILE TYR VAL GLY TYR ARG TYR TYR ASP THR SEQRES 46 A 721 PHE GLY VAL GLU PRO ALA TYR GLU PHE GLY TYR GLY LEU SEQRES 47 A 721 SER TYR THR THR PHE GLU TYR SER ASP LEU ASN VAL SER SEQRES 48 A 721 PHE ASP GLY GLU THR LEU ARG VAL GLN TYR ARG ILE GLU SEQRES 49 A 721 ASN THR GLY GLY ARG ALA GLY LYS GLU VAL SER GLN VAL SEQRES 50 A 721 TYR ILE LYS ALA PRO LYS GLY LYS ILE ASP LYS PRO PHE SEQRES 51 A 721 GLN GLU LEU LYS ALA PHE HIS LYS THR ARG LEU LEU ASN SEQRES 52 A 721 PRO GLY GLU SER GLU GLU VAL VAL LEU GLU ILE PRO VAL SEQRES 53 A 721 ARG ASP LEU ALA SER PHE ASN GLY GLU GLU TRP VAL VAL SEQRES 54 A 721 GLU ALA GLY GLU TYR GLU VAL ARG VAL GLY ALA SER SER SEQRES 55 A 721 ARG ASN ILE LYS LEU LYS GLY THR PHE SER VAL GLY GLU SEQRES 56 A 721 GLU ARG ARG PHE LYS PRO HET GLC A1722 12 HET BR A1723 1 HET BR A1724 1 HET BR A1725 1 HET BR A1726 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM BR BROMIDE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 3 BR 4(BR 1-) FORMUL 7 HOH *442(H2 O) HELIX 1 1 GLU A 2 LEU A 11 1 10 HELIX 2 2 THR A 12 VAL A 20 1 9 HELIX 3 3 PRO A 47 GLY A 50 5 4 HELIX 4 4 VAL A 83 THR A 90 1 8 HELIX 5 5 ASN A 92 TYR A 110 1 19 HELIX 6 6 ARG A 130 TYR A 134 5 5 HELIX 7 7 ASP A 138 SER A 155 1 18 HELIX 8 8 SER A 182 ILE A 189 1 8 HELIX 9 9 ILE A 189 LYS A 202 1 14 HELIX 10 10 ASN A 221 LYS A 226 1 6 HELIX 11 11 LYS A 227 TRP A 233 1 7 HELIX 12 12 ASN A 248 GLY A 256 1 9 HELIX 13 13 LYS A 264 VAL A 268 5 5 HELIX 14 14 ASP A 274 GLU A 285 1 12 HELIX 15 15 SER A 289 VAL A 305 1 17 HELIX 16 16 ASN A 306 ASN A 312 5 7 HELIX 17 17 ASP A 320 GLU A 334 1 15 HELIX 18 18 GLY A 357 ILE A 361 5 5 HELIX 19 19 SER A 380 ARG A 388 1 9 HELIX 20 20 ASP A 393 THR A 410 1 18 HELIX 21 21 SER A 434 ASN A 445 1 12 HELIX 22 22 SER A 472 GLN A 489 1 18 HELIX 23 23 TRP A 508 VAL A 512 5 5 HELIX 24 24 ALA A 521 GLN A 523 5 3 HELIX 25 25 GLU A 524 THR A 534 1 11 HELIX 26 26 ASP A 550 VAL A 554 5 5 HELIX 27 27 GLY A 579 GLY A 587 1 9 HELIX 28 28 ARG A 677 ALA A 680 5 4 SHEET 1 AA 3 GLY A 41 GLU A 42 0 SHEET 2 AA 3 VAL A 55 ALA A 57 -1 O LEU A 56 N GLY A 41 SHEET 3 AA 3 VAL A 114 LEU A 115 1 O VAL A 114 N ALA A 57 SHEET 1 AB 3 CYS A 161 PHE A 165 0 SHEET 2 AB 3 SER A 205 SER A 208 1 O SER A 205 N ILE A 162 SHEET 3 AB 3 PHE A 238 SER A 241 1 O PHE A 238 N VAL A 206 SHEET 1 AC 4 LYS A 216 TYR A 217 0 SHEET 2 AC 4 LYS A 212 LEU A 213 -1 O LEU A 213 N LYS A 216 SHEET 3 AC 4 ASP A 178 ILE A 180 1 N THR A 179 O LYS A 212 SHEET 4 AC 4 LYS A 569 VAL A 571 1 O VAL A 570 N ILE A 180 SHEET 1 AD 5 VAL A 337 ASN A 341 0 SHEET 2 AD 5 GLY A 514 LEU A 517 -1 O ILE A 515 N LEU A 339 SHEET 3 AD 5 LYS A 492 ASN A 498 1 O VAL A 495 N LEU A 516 SHEET 4 AD 5 VAL A 447 SER A 453 1 O ALA A 448 N ILE A 494 SHEET 5 AD 5 ILE A 353 PHE A 356 1 O ALA A 354 N VAL A 449 SHEET 1 AE 2 PHE A 547 PRO A 548 0 SHEET 2 AE 2 PRO A 590 TYR A 592 -1 N ALA A 591 O PHE A 547 SHEET 1 AF 3 PHE A 603 PHE A 612 0 SHEET 2 AF 3 THR A 616 ASN A 625 -1 O ARG A 618 N SER A 611 SHEET 3 AF 3 SER A 667 PRO A 675 -1 O GLU A 668 N ILE A 623 SHEET 1 AG 4 GLU A 652 LYS A 658 0 SHEET 2 AG 4 VAL A 634 LYS A 640 -1 O SER A 635 N HIS A 657 SHEET 3 AG 4 GLY A 692 SER A 701 -1 O GLU A 695 N LYS A 640 SHEET 4 AG 4 ASN A 704 VAL A 713 -1 O ASN A 704 N ALA A 700 SHEET 1 AH 3 SER A 681 PHE A 682 0 SHEET 2 AH 3 TRP A 687 VAL A 689 -1 O VAL A 688 N SER A 681 SHEET 3 AH 3 ARG A 717 PHE A 719 -1 O ARG A 717 N VAL A 689 CISPEP 1 ASP A 58 GLY A 59 0 3.83 CISPEP 2 ALA A 117 PRO A 118 0 5.27 CISPEP 3 LYS A 163 HIS A 164 0 -4.84 CISPEP 4 PHE A 165 VAL A 166 0 2.92 CISPEP 5 MET A 261 PRO A 262 0 -2.23 CISPEP 6 LEU A 345 PRO A 346 0 1.12 CISPEP 7 PHE A 559 PRO A 560 0 1.68 CISPEP 8 GLU A 562 PRO A 563 0 -6.21 CRYST1 74.550 128.160 175.650 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005693 0.00000