PDB Short entry for 2X5X HEADER HYDROLASE 11-FEB-10 2X5X TITLE THE CRYSTAL STRUCTURE OF PHAZ7 AT ATOMIC (1.2 ANGSTROM) RESOLUTION TITLE 2 REVEALS DETAILS OF THE ACTIVE SITE AND SUGGESTS A SUBSTRATE BINDING TITLE 3 MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHB DEPOLYMERASE PHAZ7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 39-380 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAUCIMONAS LEMOIGNEI; SOURCE 3 ORGANISM_TAXID: 29443 KEYWDS BIOPOLYMERS, OXYANION HOLE, HYDROLASE, BIODEGRADATION, CATALYTIC TRIA EXPDTA X-RAY DIFFRACTION AUTHOR S.WAKADKAR,S.HERMAWAN,D.JENDROSSEK,A.C.PAPAGEORGIOU REVDAT 5 20-DEC-23 2X5X 1 REMARK LINK REVDAT 4 22-MAY-19 2X5X 1 REMARK REVDAT 3 13-MAR-19 2X5X 1 JRNL REMARK LINK REVDAT 2 16-JUN-10 2X5X 1 JRNL REVDAT 1 09-JUN-10 2X5X 0 JRNL AUTH S.WAKADKAR,S.HERMAWAN,D.JENDROSSEK,A.C.PAPAGEORGIOU JRNL TITL THE STRUCTURE OF PHAZ7 AT ATOMIC (1.2 A) RESOLUTION REVEALS JRNL TITL 2 DETAILS OF THE ACTIVE SITE AND SUGGESTS A SUBSTRATE-BINDING JRNL TITL 3 MODE. JRNL REF ACTA CRYSTALLOGR. SECT. F V. 66 648 2010 JRNL REF 2 STRUCT. BIOL. CRYST. COMMUN. JRNL REFN ESSN 1744-3091 JRNL PMID 20516591 JRNL DOI 10.1107/S174430911001434X REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.139 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.139 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 98593 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 118436 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2549 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 563 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3140.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 0.00 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 16 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 28804 REMARK 3 NUMBER OF RESTRAINTS : 37917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 ANGLE DISTANCES (A) : 0.026 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.029 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.073 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.077 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.519 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.004 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.033 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.091 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC REFINEMENT REDUCED FREE R REMARK 3 (NO CUTOFF) BY 5 REMARK 4 REMARK 4 2X5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1290042870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124737 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 99.90 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VTV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PHAZ7 WAS CRYSTALLIZED IN THE PRESENCE REMARK 280 OF PMSF USING THE HANGING DROP VAPOR DIFFUSION METHOD AT 16 C. REMARK 280 THE WELL SOLUTION CONSISTED OF 20% W/V PEG3350 AND 0.2 M NA REMARK 280 IODIDE AND A 0.1 M PMSF STOCK SOLUTION IN ISOPROPANOL WAS ADDED REMARK 280 TO THE WELL TO A FINAL CONCENTRATION OF 10 MM.A 1.5 MICROLITER REMARK 280 PROTEIN SOLUTION WAS MIXED WITH AN EQUAL VOLUME OF WELL SOLUTION REMARK 280 ON SILICONIZED COVERSLIPS., PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.81500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -151.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2355 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2395 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2420 O HOH A 2425 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 I IOD A 1359 O HOH A 2535 4544 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 306 CE1 HIS A 306 NE2 0.180 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 68 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 156 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 156 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 169 CG - CD2 - CE2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TYR A 172 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 222 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 308 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 72 170.20 -59.08 REMARK 500 SER A 136 -130.85 55.83 REMARK 500 ARG A 156 -60.77 -93.79 REMARK 500 ALA A 177 40.17 -141.51 REMARK 500 ALA A 181 62.94 -154.81 REMARK 500 SER A 186 -145.89 -84.40 REMARK 500 TYR A 204 -124.43 54.02 REMARK 500 ASN A 210 84.22 -154.96 REMARK 500 ARG A 228 68.82 -119.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A2011 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A2065 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2102 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A2195 DISTANCE = 6.10 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 1350 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1357 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 35 OG REMARK 620 2 IOD A1343 I 69.2 REMARK 620 3 HOH A2015 O 75.8 134.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO2 A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1355 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 1360 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VTV RELATED DB: PDB REMARK 900 PHAZ7 DEPOLYMERASE FROM PAUCIMONAS LEMOIGNEI DBREF 2X5X A 1 342 UNP Q939Q9 Q939Q9_PSELE 39 380 SEQRES 1 A 342 LEU THR CYS GLY THR ASN SER GLY PHE VAL CYS LYS GLY SEQRES 2 A 342 THR GLN THR GLN TYR ALA GLY GLY PHE ALA PRO GLY VAL SEQRES 3 A 342 GLY TYR GLY GLY PHE GLY GLY GLY SER CYS THR ALA THR SEQRES 4 A 342 LYS THR PRO VAL ILE PHE ILE HIS GLY ASN GLY ASP ASN SEQRES 5 A 342 ALA ILE SER PHE ASP MET PRO PRO GLY ASN VAL SER GLY SEQRES 6 A 342 TYR GLY THR PRO ALA ARG SER VAL TYR ALA GLU LEU LYS SEQRES 7 A 342 ALA ARG GLY TYR ASN ASP CYS GLU ILE PHE GLY VAL THR SEQRES 8 A 342 TYR LEU SER SER SER GLU GLN GLY SER ALA GLN TYR ASN SEQRES 9 A 342 TYR HIS SER SER THR LYS TYR ALA ILE ILE LYS THR PHE SEQRES 10 A 342 ILE ASP LYS VAL LYS ALA TYR THR GLY LYS SER GLN VAL SEQRES 11 A 342 ASP ILE VAL ALA HIS SER MET GLY VAL SER MET SER LEU SEQRES 12 A 342 ALA THR LEU GLN TYR TYR ASN ASN TRP THR SER VAL ARG SEQRES 13 A 342 LYS PHE ILE ASN LEU ALA GLY GLY ILE ARG GLY LEU TYR SEQRES 14 A 342 SER CYS TYR TYR THR GLY TYR ALA ASN ALA ALA ALA PRO SEQRES 15 A 342 THR CYS GLY SER GLN ASN TYR TYR ASN SER TYR THR PHE SEQRES 16 A 342 GLY PHE PHE PRO GLU GLY TRP TYR TYR GLY VAL TRP VAL SEQRES 17 A 342 SER ASN PRO TRP THR GLY SER GLY SER THR ASN SER MET SEQRES 18 A 342 ARG ASP MET PRO ALA LYS ARG THR ALA VAL SER PHE TYR SEQRES 19 A 342 THR LEU SER ALA GLY PHE LYS ASP GLN VAL GLY CYS ALA SEQRES 20 A 342 THR ALA SER PHE TRP ALA GLY CYS ASP SER ALA ALA LYS SEQRES 21 A 342 PHE ALA SER THR THR SER ASN VAL LYS ALA GLN ILE ASN SEQRES 22 A 342 VAL GLY ALA GLY SER ASN ALA THR GLN ALA ASP TYR ASP SEQRES 23 A 342 TRP ALA ASP GLY MET PRO TYR ASN ALA GLY GLY GLY ASP SEQRES 24 A 342 THR THR ASN GLY VAL GLY HIS PHE ARG THR LYS THR ASN SEQRES 25 A 342 THR GLY ALA ILE ILE GLN ARG MET LEU LEU THR THR CYS SEQRES 26 A 342 THR GLY LEU ASP CYS ALA ALA GLU TYR THR THR GLY PRO SEQRES 27 A 342 LYS ALA ALA TYR HET IOD A1343 1 HET IOD A1344 1 HET IOD A1345 1 HET IOD A1346 1 HET IOD A1347 1 HET IOD A1348 1 HET SO2 A1349 3 HET PG4 A1350 10 HET CL A1351 1 HET CL A1352 1 HET CL A1353 1 HET CL A1354 1 HET CL A1355 1 HET CL A1356 1 HET NA A1357 1 HET NA A1358 1 HET IOD A1359 1 HET IOD A1360 1 HETNAM IOD IODIDE ION HETNAM SO2 SULFUR DIOXIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 IOD 8(I 1-) FORMUL 8 SO2 O2 S FORMUL 9 PG4 C8 H18 O5 FORMUL 10 CL 6(CL 1-) FORMUL 16 NA 2(NA 1+) FORMUL 20 HOH *563(H2 O) HELIX 1 1 ASN A 52 MET A 58 5 7 HELIX 2 2 SER A 72 ARG A 80 1 9 HELIX 3 3 SER A 94 GLY A 99 1 6 HELIX 4 4 SER A 100 ASN A 104 5 5 HELIX 5 5 SER A 107 GLY A 126 1 20 HELIX 6 6 SER A 136 ASN A 150 1 15 HELIX 7 7 ASN A 151 THR A 153 5 3 HELIX 8 8 LEU A 168 TYR A 172 5 5 HELIX 9 9 ALA A 181 GLY A 185 5 5 HELIX 10 10 SER A 220 ARG A 222 5 3 HELIX 11 11 ASP A 223 ARG A 228 1 6 HELIX 12 12 ALA A 238 LYS A 241 5 4 HELIX 13 13 ASP A 242 ALA A 247 1 6 HELIX 14 14 GLY A 254 ALA A 258 5 5 HELIX 15 15 ASP A 286 GLY A 290 5 5 HELIX 16 16 PHE A 307 ASN A 312 1 6 HELIX 17 17 THR A 313 THR A 323 1 11 HELIX 18 18 THR A 326 ALA A 332 5 7 SHEET 1 AA 9 THR A 16 TYR A 18 0 SHEET 2 AA 9 GLY A 30 GLY A 32 1 O GLY A 30 N GLN A 17 SHEET 3 AA 9 ILE A 87 VAL A 90 -1 O GLY A 89 N PHE A 31 SHEET 4 AA 9 VAL A 43 ILE A 46 1 O VAL A 43 N PHE A 88 SHEET 5 AA 9 VAL A 130 HIS A 135 1 O ASP A 131 N ILE A 44 SHEET 6 AA 9 VAL A 155 LEU A 161 1 N ARG A 156 O VAL A 130 SHEET 7 AA 9 SER A 232 SER A 237 1 O SER A 232 N PHE A 158 SHEET 8 AA 9 VAL A 268 ASN A 273 1 N LYS A 269 O PHE A 233 SHEET 9 AA 9 ALA A 340 ALA A 341 -1 O ALA A 340 N ASN A 273 SHEET 1 AB 2 GLY A 201 TYR A 203 0 SHEET 2 AB 2 VAL A 206 VAL A 208 -1 O VAL A 206 N TYR A 203 SSBOND 1 CYS A 3 CYS A 11 1555 1555 2.07 SSBOND 2 CYS A 36 CYS A 85 1555 1555 2.09 SSBOND 3 CYS A 171 CYS A 184 1555 1555 2.12 SSBOND 4 CYS A 246 CYS A 255 1555 1555 2.09 SSBOND 5 CYS A 325 CYS A 330 1555 1555 2.15 LINK OG SER A 136 S SO2 A1349 1555 1555 1.38 LINK NE2 HIS A 306 S SO2 A1349 1555 1555 1.66 LINK OG BSER A 35 NA NA A1357 1555 1555 3.11 LINK I IOD A1343 NA NA A1357 1555 1555 1.80 LINK NA NA A1357 O HOH A2015 1555 4545 2.11 SITE 1 AC1 3 SER A 7 SER A 35 NA A1357 SITE 1 AC2 2 GLY A 25 HOH A2032 SITE 1 AC3 2 GLY A 27 HOH A2079 SITE 1 AC4 4 ARG A 156 LYS A 157 ALA A 341 HOH A2525 SITE 1 AC5 2 ASN A 6 HOH A2008 SITE 1 AC6 6 ASN A 49 SER A 136 MET A 291 HIS A 306 SITE 2 AC6 6 PHE A 307 HOH A2561 SITE 1 AC7 9 TYR A 105 TYR A 176 GLY A 185 SER A 186 SITE 2 AC7 9 GLN A 187 ASN A 188 HOH A2267 HOH A2372 SITE 3 AC7 9 HOH A2562 SITE 1 AC8 1 GLY A 205 SITE 1 AC9 2 MET A 291 HOH A2254 SITE 1 BC1 1 ASN A 294 SITE 1 BC2 1 GLY A 65 SITE 1 BC3 1 ASP A 84 SITE 1 BC4 1 TYR A 204 SITE 1 BC5 6 THR A 5 LYS A 12 GLY A 20 SER A 35 SITE 2 BC5 6 IOD A1343 HOH A2015 SITE 1 BC6 5 TYR A 173 TYR A 204 SER A 250 PHE A 251 SITE 2 BC6 5 HOH A2498 SITE 1 BC7 1 HOH A2535 SITE 1 BC8 2 THR A 41 HOH A2536 CRYST1 49.630 140.580 56.750 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007113 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017621 0.00000