PDB Short entry for 2XB3 HEADER PHOTOSYNTHESIS 03-APR-10 2XB3 TITLE THE STRUCTURE OF CYANOBACTERIAL PSBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSBP PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 19-183; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS PHOTOSYNTHESIS, ZINC-BINDING, PHOTOSYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR F.MICHOUX,K.TAKASAKA,P.NIXON,J.W.MURRAY REVDAT 3 08-MAY-24 2XB3 1 REMARK LINK REVDAT 2 11-MAY-11 2XB3 1 JRNL REMARK REVDAT 1 25-AUG-10 2XB3 0 JRNL AUTH F.MICHOUX,K.TAKASAKA,M.BOEHM,P.NIXON,J.W.MURRAY JRNL TITL THE STRUCTURE OF CYANOP AT 2.8A: IMPLICATIONS FOR THE JRNL TITL 2 EVOLUTION AND FUNCTION OF THE PSBP SUBUNIT OF PHOTOSYSTEM JRNL TITL 3 II. JRNL REF BIOCHEMISTRY V. 49 7411 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20698571 JRNL DOI 10.1021/BI1011145 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 4899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 232 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 333 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 14 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47000 REMARK 3 B22 (A**2) : 2.47000 REMARK 3 B33 (A**2) : -3.71000 REMARK 3 B12 (A**2) : 1.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.058 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1228 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 795 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1677 ; 1.618 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1944 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 153 ; 8.719 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 54 ;40.708 ;24.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 193 ;16.499 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 197 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1369 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 244 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 30 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 24 ; 0.224 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 774 ; 0.950 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 309 ; 0.106 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1259 ; 1.790 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 454 ; 1.898 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 418 ; 3.356 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): -22.7070 5.7970 -1.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0528 REMARK 3 T33: 0.2861 T12: 0.0349 REMARK 3 T13: 0.0631 T23: 0.1148 REMARK 3 L TENSOR REMARK 3 L11: 2.0188 L22: 2.2143 REMARK 3 L33: 6.1998 L12: 0.5684 REMARK 3 L13: -1.0715 L23: 2.8277 REMARK 3 S TENSOR REMARK 3 S11: -0.2444 S12: -0.2247 S13: -0.2943 REMARK 3 S21: 0.1163 S22: -0.1114 S23: -0.1766 REMARK 3 S31: 0.4201 S32: 0.1591 S33: 0.3558 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): -28.0900 10.4060 -7.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.3148 T22: 0.0992 REMARK 3 T33: 0.0986 T12: 0.0303 REMARK 3 T13: 0.0864 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.6015 L22: 2.8517 REMARK 3 L33: 4.1358 L12: -1.3093 REMARK 3 L13: -3.2482 L23: 1.2305 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.2028 S13: -0.0542 REMARK 3 S21: -0.5849 S22: -0.1155 S23: -0.1412 REMARK 3 S31: 0.0409 S32: -0.2725 S33: 0.0862 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -33.9290 20.9260 -15.3420 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.3218 REMARK 3 T33: 0.1092 T12: -0.0442 REMARK 3 T13: -0.0491 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.4020 L22: 6.6171 REMARK 3 L33: 6.3773 L12: -3.3193 REMARK 3 L13: 2.2779 L23: -0.2229 REMARK 3 S TENSOR REMARK 3 S11: 0.1258 S12: -0.4624 S13: -0.2559 REMARK 3 S21: -0.2552 S22: 0.0620 S23: 0.3876 REMARK 3 S31: 0.0226 S32: -1.2634 S33: -0.1878 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): -25.6020 15.6900 -13.6230 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.0903 REMARK 3 T33: 0.1385 T12: -0.0987 REMARK 3 T13: 0.0308 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 0.7830 L22: 8.7069 REMARK 3 L33: 5.3440 L12: 1.3871 REMARK 3 L13: 1.8968 L23: 5.4086 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: 0.1378 S13: 0.1196 REMARK 3 S21: 0.1136 S22: -0.2418 S23: 0.6244 REMARK 3 S31: -0.0011 S32: 0.1517 S33: 0.3849 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 150 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1670 15.6300 -8.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.1468 REMARK 3 T33: 0.2045 T12: -0.0301 REMARK 3 T13: 0.0221 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.9898 L22: 6.5381 REMARK 3 L33: 3.8443 L12: 2.5365 REMARK 3 L13: 0.7691 L23: 1.8833 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: -0.0016 S13: -0.1314 REMARK 3 S21: -0.4075 S22: 0.0180 S23: -0.2816 REMARK 3 S31: -0.2043 S32: 0.0834 S33: 0.1488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2XB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5133 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 56.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.810 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.12 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M ZN ACETATE, 0.1M NA-CACODYLATE PH REMARK 280 6.5, 10% V/V 2-PROPANOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.53733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.26867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.26867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 54.53733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -290.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.26867 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 GLY A 133 REMARK 465 ASP A 134 REMARK 465 GLY A 135 REMARK 465 ASN A 136 REMARK 465 THR A 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 ASP A 118 CG OD1 OD2 REMARK 470 ASP A 119 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 92.07 -63.95 REMARK 500 SER A 101 -127.11 50.01 REMARK 500 ASP A 118 -138.22 42.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD2 REMARK 620 2 ASP A 34 OD2 132.7 REMARK 620 3 ASP A 54 OD2 89.4 85.9 REMARK 620 4 GLU A 164 OE2 108.5 117.5 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 58 ND1 REMARK 620 2 THR A 63 O 95.8 REMARK 620 3 GLU A 87 OE2 91.9 166.3 REMARK 620 4 ASP A 91 OD1 84.1 102.0 90.0 REMARK 620 5 ASP A 91 OD2 137.7 83.6 98.2 55.1 REMARK 620 6 HOH A2019 O 122.4 79.3 87.0 153.4 99.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 ND1 REMARK 620 2 GLU A 163 OE1 130.4 REMARK 620 3 GLU A 163 OE2 115.6 57.1 REMARK 620 4 HOH A2020 O 110.4 115.7 81.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 170 OE1 REMARK 620 2 GLU A 170 OE2 53.7 REMARK 620 3 GLU A 170 OE2 128.5 95.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1005 DBREF 2XB3 A 19 183 UNP Q8DH84 Q8DH84_THEEB 19 183 SEQADV 2XB3 SER A 20 UNP CYS 20 CONFLICT SEQRES 1 A 165 GLY SER SER ALA THR SER GLY LEU GLN ALA TYR VAL ASP SEQRES 2 A 165 SER TYR ASP GLY TYR GLU PHE LEU TYR PRO ARG GLY TRP SEQRES 3 A 165 VAL GLN VAL GLN VAL GLU ASP PRO VAL ASP VAL VAL PHE SEQRES 4 A 165 HIS ASP ILE ILE GLU THR THR GLU ASN VAL SER VAL VAL SEQRES 5 A 165 VAL ASN THR VAL ALA SER THR LYS SER LEU GLU GLU LEU SEQRES 6 A 165 GLY SER PRO GLU GLU VAL GLY ASP ARG LEU LEU ARG ASN SEQRES 7 A 165 ILE ILE ALA PRO SER GLU SER GLY ARG SER SER ALA LEU SEQRES 8 A 165 ILE ALA ALA THR SER GLN LYS ALA ASP ASP LYS THR TYR SEQRES 9 A 165 TYR ILE LEU GLU TYR ALA VAL THR LEU PRO GLY ASP GLY SEQRES 10 A 165 ASN THR ALA GLN GLN ARG HIS ASN LEU SER SER ILE ALA SEQRES 11 A 165 VAL SER ARG GLY LYS VAL TYR THR LEU SER VAL SER ALA SEQRES 12 A 165 PRO GLU GLU ARG TRP PRO LYS VAL GLU ASP GLN PHE LYS SEQRES 13 A 165 THR ILE VAL SER SER PHE THR VAL TYR HET ZN A1001 1 HET ZN A1002 1 HET ZN A1003 1 HET ZN A1004 1 HET ZN A1005 1 HETNAM ZN ZINC ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 HOH *20(H2 O) HELIX 1 1 LEU A 80 GLY A 84 5 5 HELIX 2 2 SER A 85 ILE A 97 1 13 HELIX 3 3 ARG A 165 SER A 179 1 15 SHEET 1 AA 3 LEU A 26 ASP A 31 0 SHEET 2 AA 3 TYR A 36 PRO A 41 -1 O TYR A 36 N ASP A 31 SHEET 3 AA 3 THR A 181 VAL A 182 -1 O THR A 181 N GLU A 37 SHEET 1 AB 7 TRP A 44 VAL A 47 0 SHEET 2 AB 7 VAL A 53 ASP A 59 -1 O VAL A 56 N VAL A 47 SHEET 3 AB 7 ASN A 66 THR A 73 -1 O VAL A 67 N PHE A 57 SHEET 4 AB 7 LYS A 153 PRO A 162 -1 O VAL A 154 N ASN A 72 SHEET 5 AB 7 GLN A 140 SER A 150 -1 O HIS A 142 N ALA A 161 SHEET 6 AB 7 LYS A 120 THR A 130 -1 O TYR A 123 N ILE A 147 SHEET 7 AB 7 SER A 106 ALA A 117 -1 O SER A 106 N THR A 130 LINK OD2 ASP A 31 ZN ZN A1001 1555 1555 1.95 LINK OD2 ASP A 34 ZN ZN A1001 1555 1555 2.15 LINK OD2 ASP A 54 ZN ZN A1001 1555 1555 2.25 LINK ND1 HIS A 58 ZN ZN A1002 2564 1555 2.10 LINK OD1 ASP A 59 ZN ZN A1005 1555 1555 1.99 LINK O THR A 63 ZN ZN A1002 2564 1555 2.50 LINK OE2 GLU A 87 ZN ZN A1002 1555 1555 1.96 LINK OD1 ASP A 91 ZN ZN A1002 1555 1555 2.54 LINK OD2 ASP A 91 ZN ZN A1002 1555 1555 2.24 LINK ND1 HIS A 142 ZN ZN A1004 1555 1555 2.06 LINK OE1 GLU A 163 ZN ZN A1004 1555 1555 2.60 LINK OE2 GLU A 163 ZN ZN A1004 1555 1555 1.86 LINK OE2 GLU A 164 ZN ZN A1001 4455 1555 2.16 LINK OE1 GLU A 170 ZN ZN A1003 1555 1555 2.52 LINK OE2 GLU A 170 ZN ZN A1003 1555 1555 2.38 LINK OE2 GLU A 170 ZN ZN A1003 6554 1555 1.98 LINK ZN ZN A1002 O HOH A2019 1555 1555 2.21 LINK ZN ZN A1004 O HOH A2020 1555 1555 2.54 CISPEP 1 ASP A 51 PRO A 52 0 4.34 SITE 1 AC1 4 ASP A 31 ASP A 34 ASP A 54 GLU A 164 SITE 1 AC2 5 HIS A 58 THR A 63 GLU A 87 ASP A 91 SITE 2 AC2 5 HOH A2019 SITE 1 AC3 3 GLU A 170 LYS A 174 HOH A2014 SITE 1 AC4 3 HIS A 142 GLU A 163 HOH A2020 SITE 1 AC5 1 ASP A 59 CRYST1 64.946 64.946 81.806 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015397 0.008890 0.000000 0.00000 SCALE2 0.000000 0.017779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012224 0.00000