PDB Short entry for 2XU0 HEADER MEMBRANE PROTEIN 14-OCT-10 2XU0 TITLE CRYSTAL STRUCTURE OF THE NTS-DBL1(ALPHA-1) DOMAIN OF THE PLASMODIUM TITLE 2 FALCIPARUM MEMBRANE PROTEIN 1 (PFEMP1) FROM THE VARO STRAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ERYTHROCYTE MEMBRANE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NTS-DBL1 DOMAIN, RESIDUES 2-487; COMPND 5 SYNONYM: PLASMODIUM FALCIPARUM MEMBRANE PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM PALO ALTO/UGANDA; SOURCE 3 ORGANISM_TAXID: 57270; SOURCE 4 VARIANT: VARO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ORIGAMI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PMALC2X KEYWDS MEMBRANE PROTEIN, ADHESION, VIRULENCE, DUFFY-BINDING-LIKE-DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR A.JUILLERAT,A.LEWIT-BENTLEY,M.GUILLOTTE,I.VIGAN-WOMAS,A.HESSLER, AUTHOR 2 S.GANGNARD,P.ENGLAND,O.MERCEREAU-PUIJALON,G.A.BENTLEY REVDAT 3 06-MAR-19 2XU0 1 REMARK REVDAT 2 20-AUG-14 2XU0 1 REMARK VERSN REVDAT 1 06-APR-11 2XU0 0 JRNL AUTH A.JUILLERAT,A.LEWIT-BENTLEY,M.GUILLOTTE,S.GANGNARD,A.HESSEL, JRNL AUTH 2 B.BARON,I.VIGAN-WOMAS,P.ENGLAND,O.MERCEREAU-PUIJALON, JRNL AUTH 3 G.A.BENTLEY JRNL TITL STRUCTURE OF A PLASMODIUM FALCIPARUM PFEMP1 ROSETTING DOMAIN JRNL TITL 2 REVEALS A ROLE FOR THE N-TERMINAL SEGMENT IN JRNL TITL 3 HEPARIN-MEDIATED ROSETTE INHIBITION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 5243 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21402930 JRNL DOI 10.1073/PNAS.1018692108 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.9.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 35007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2803 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2317 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2307 REMARK 3 BIN FREE R VALUE : 0.2532 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 137 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3650 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08970 REMARK 3 B22 (A**2) : 0.08970 REMARK 3 B33 (A**2) : -0.17940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.245 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.182 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.154 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.171 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3809 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5117 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1387 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 127 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 529 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3809 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 466 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 2 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4639 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.98 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.53 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XU0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-09; NULL REMARK 200 TEMPERATURE (KELVIN) : 180; 180 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SOLEIL; ESRF REMARK 200 BEAMLINE : PROXIMA 1; ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992; 0.9792 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI (111) CRYSTAL; REMARK 200 CHANNEL-CUT SI (111) CRYSTAL REMARK 200 OPTICS : KB-MIRRORS; KB-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD; ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35051 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 34.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOUR DIFFUSION WITH 10 MG/ML PROTEIN REMARK 280 AND 0.2M NACL, WITH 1.2 MOLAR EXCESS HEPARIN 5KD, AGAINST 10% REMARK 280 PEG3350, 0.2M L-PRO, 0.1M HEPES, PH 7.5, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.49000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.62400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.62400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.74500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.62400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.62400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.23500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.62400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.62400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.74500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.62400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.62400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.23500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 125 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 128 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 154 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 186 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 250 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 360 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 ASN A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 LYS A 11 REMARK 465 SER A 53 REMARK 465 ARG A 54 REMARK 465 ALA A 55 REMARK 465 GLN A 56 REMARK 465 PHE A 57 REMARK 465 VAL A 58 REMARK 465 ASP A 59 REMARK 465 ALA A 60 REMARK 465 LEU A 61 REMARK 465 SER A 62 REMARK 465 SER A 63 REMARK 465 ARG A 64 REMARK 465 TYR A 65 REMARK 465 ILE A 66 REMARK 465 GLU A 67 REMARK 465 GLY A 68 REMARK 465 ARG A 69 REMARK 465 ASN A 70 REMARK 465 SER A 71 REMARK 465 HIS A 83 REMARK 465 THR A 84 REMARK 465 ASN A 85 REMARK 465 ILE A 86 REMARK 465 LYS A 87 REMARK 465 THR A 88 REMARK 465 GLY A 89 REMARK 465 TYR A 90 REMARK 465 ASN A 91 REMARK 465 GLU A 92 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 74 -167.29 -126.99 REMARK 500 GLN A 102 -164.60 -104.77 REMARK 500 TYR A 240 35.65 -96.61 REMARK 500 TYR A 426 7.45 -67.06 REMARK 500 ASN A 450 32.78 -95.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2030 DISTANCE = 6.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1488 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 121 O REMARK 620 2 SER A 115 O 95.8 REMARK 620 3 ILE A 118 O 91.1 83.0 REMARK 620 4 HOH A2054 O 178.0 84.1 87.0 REMARK 620 5 HOH A2061 O 92.4 171.6 95.5 87.5 REMARK 620 6 HOH A2062 O 90.6 87.1 170.1 91.3 94.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1488 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRO A 1493 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 66-68 (IEG) CORRESPOND TO FACTOR X CLEAVAGE SITE. REMARK 999 SEVEN POTENTIAL GLYCOSYLATION SITES HAVE BEEN MUTATED REMARK 999 (EITHER S OR T TO A) DBREF 2XU0 A 2 487 UNP B7T1P0 B7T1P0_PLAFA 2 487 SEQADV 2XU0 PHE A 1 UNP B7T1P0 EXPRESSION TAG SEQADV 2XU0 ALA A 10 UNP B7T1P0 THR 10 ENGINEERED MUTATION SEQADV 2XU0 ILE A 66 UNP B7T1P0 GLY 66 ENGINEERED MUTATION SEQADV 2XU0 GLU A 67 UNP B7T1P0 TYR 67 ENGINEERED MUTATION SEQADV 2XU0 GLY A 68 UNP B7T1P0 VAL 68 ENGINEERED MUTATION SEQADV 2XU0 ALA A 125 UNP B7T1P0 SER 125 ENGINEERED MUTATION SEQADV 2XU0 ALA A 128 UNP B7T1P0 THR 128 ENGINEERED MUTATION SEQADV 2XU0 ALA A 154 UNP B7T1P0 THR 154 ENGINEERED MUTATION SEQADV 2XU0 ALA A 186 UNP B7T1P0 SER 186 ENGINEERED MUTATION SEQADV 2XU0 ALA A 250 UNP B7T1P0 SER 250 ENGINEERED MUTATION SEQADV 2XU0 ALA A 360 UNP B7T1P0 SER 360 ENGINEERED MUTATION SEQRES 1 A 487 PHE GLY SER SER HIS SER THR ASN ASP ALA LYS SER PRO SEQRES 2 A 487 THR LEU SER GLU SER HIS LYS SER ALA ARG ASN VAL LEU SEQRES 3 A 487 GLU ASN ILE GLY ILE LYS ILE TYR ASN GLN GLU ILE LYS SEQRES 4 A 487 LYS LYS ASN PRO TYR GLU GLN GLN LEU LYS GLY THR LEU SEQRES 5 A 487 SER ARG ALA GLN PHE VAL ASP ALA LEU SER SER ARG TYR SEQRES 6 A 487 ILE GLU GLY ARG ASN SER ASP GLY ASN SER CYS ASN LEU SEQRES 7 A 487 ASP HIS LEU PHE HIS THR ASN ILE LYS THR GLY TYR ASN SEQRES 8 A 487 GLU GLY ARG LYS PRO CYS TYR GLY ARG GLU GLN ASN ARG SEQRES 9 A 487 PHE ASP GLU ASN ALA GLU ALA TYR CYS ASN SER ASP LYS SEQRES 10 A 487 ILE ARG GLY ASN GLU ASN ASN ALA ASN GLY ALA ALA CYS SEQRES 11 A 487 ALA PRO PRO ARG ARG ARG HIS ILE CYS ASP GLN ASN LEU SEQRES 12 A 487 GLU PHE LEU ASP ASN LYS ASN THR ASN THR ALA HIS ASP SEQRES 13 A 487 LEU LEU GLY ASN VAL LEU VAL THR ALA LYS TYR GLU GLY SEQRES 14 A 487 ASN TYR ILE VAL ASN ASP HIS PRO ASP LYS ASN SER ASN SEQRES 15 A 487 GLY ASN LYS ALA GLY ILE CYS THR SER LEU ALA ARG SER SEQRES 16 A 487 PHE ALA ASP ILE GLY ASP ILE VAL ARG GLY ARG ASP MET SEQRES 17 A 487 PHE LEU PRO ASN LYS ASP ASP LYS VAL GLN LYS GLY LEU SEQRES 18 A 487 GLN VAL VAL PHE LYS LYS ILE TYR LYS SER LEU THR PRO SEQRES 19 A 487 GLU ALA ARG LYS HIS TYR ALA HIS GLY ASP GLY SER GLY SEQRES 20 A 487 ASN TYR ALA LYS LEU ARG GLU ASP TRP TRP THR ILE ASN SEQRES 21 A 487 ARG GLU GLN ILE TRP LYS ALA LEU THR CYS SER ALA PRO SEQRES 22 A 487 TYR TYR ALA ASP TYR PHE ARG LYS GLY SER ASP GLY THR SEQRES 23 A 487 LEU HIS PHE SER SER HIS GLY LYS CYS GLY HIS ASN GLU SEQRES 24 A 487 GLY ALA PRO PRO THR TYR LEU ASP TYR VAL PRO GLN PHE SEQRES 25 A 487 LEU ARG TRP PHE GLU GLU TRP SER GLU GLU PHE CYS ARG SEQRES 26 A 487 ILE LYS LYS ILE LYS ILE ASP LYS VAL LYS LYS GLU CYS SEQRES 27 A 487 ARG ASP GLU GLN ASN LYS LYS TYR CYS SER GLY ASP GLY SEQRES 28 A 487 HIS ASP CYS THR GLN THR ASN LEU ALA HIS ASN GLN ILE SEQRES 29 A 487 PHE VAL ASP LEU ASP CYS PRO ARG CYS GLN ASP GLN CYS SEQRES 30 A 487 ILE LYS TYR ASN GLU TRP ILE VAL LYS LYS LEU GLU GLU SEQRES 31 A 487 PHE TYR LYS GLN ASN LEU LYS TYR SER MET GLU ILE GLN SEQRES 32 A 487 LYS TRP LYS LYS THR LYS ASN ASN TYR TYR ASP LYS GLU SEQRES 33 A 487 PHE TYR GLU ASN LEU ASP LYS LYS SER TYR SER THR ILE SEQRES 34 A 487 ASP LYS PHE LEU ASN LEU LEU ASN ASN GLY LYS HIS CYS SEQRES 35 A 487 HIS ASP ASN LYS ASP GLU LYS ASN LYS ILE ASP PHE ASN SEQRES 36 A 487 LYS PRO ILE LYS THR PHE SER ILE SER GLU TYR CYS LYS SEQRES 37 A 487 THR CYS PRO LEU TYR GLY VAL THR CYS THR ASN ARG GLY SEQRES 38 A 487 ILE CYS ILE HIS ASN SER HET PRO A1493 8 HET MG A1488 1 HET GOL A1489 6 HET GOL A1490 6 HET GOL A1491 6 HET GOL A1492 6 HETNAM PRO PROLINE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PRO C5 H9 N O2 FORMUL 3 MG MG 2+ FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 HOH *267(H2 O) HELIX 1 1 SER A 12 GLU A 17 1 6 HELIX 2 2 SER A 21 LYS A 40 1 20 HELIX 3 3 TYR A 44 LEU A 48 5 5 HELIX 4 4 ASN A 77 PHE A 82 1 6 HELIX 5 5 PRO A 132 HIS A 137 1 6 HELIX 6 6 ASP A 140 PHE A 145 5 6 HELIX 7 7 THR A 153 HIS A 176 1 24 HELIX 8 8 LYS A 185 ARG A 204 1 20 HELIX 9 9 ASP A 215 LEU A 232 1 18 HELIX 10 10 THR A 233 TYR A 240 1 8 HELIX 11 11 ASN A 248 THR A 269 1 22 HELIX 12 12 GLY A 293 HIS A 297 5 5 HELIX 13 13 TYR A 305 VAL A 309 5 5 HELIX 14 14 PRO A 310 CYS A 338 1 29 HELIX 15 15 LEU A 359 ASN A 362 5 4 HELIX 16 16 CYS A 370 THR A 408 1 39 HELIX 17 17 ASP A 414 LYS A 424 1 11 HELIX 18 18 THR A 428 ASN A 438 1 11 HELIX 19 19 GLY A 439 ASP A 444 1 6 HELIX 20 20 LYS A 456 PHE A 461 1 6 HELIX 21 21 SER A 464 LYS A 468 5 5 SHEET 1 AA 2 PHE A 279 LYS A 281 0 SHEET 2 AA 2 LEU A 287 PHE A 289 -1 O HIS A 288 N ARG A 280 SHEET 1 AB 2 ARG A 339 ASP A 340 0 SHEET 2 AB 2 LYS A 345 TYR A 346 -1 O LYS A 345 N ASP A 340 SHEET 1 AC 2 VAL A 475 CYS A 477 0 SHEET 2 AC 2 CYS A 483 HIS A 485 -1 O ILE A 484 N THR A 476 SSBOND 1 CYS A 76 CYS A 270 1555 1555 2.03 SSBOND 2 CYS A 97 CYS A 139 1555 1555 2.04 SSBOND 3 CYS A 113 CYS A 130 1555 1555 2.05 SSBOND 4 CYS A 189 CYS A 295 1555 1555 2.03 SSBOND 5 CYS A 324 CYS A 442 1555 1555 2.05 SSBOND 6 CYS A 338 CYS A 373 1555 1555 2.03 SSBOND 7 CYS A 347 CYS A 370 1555 1555 2.04 SSBOND 8 CYS A 354 CYS A 470 1555 1555 2.05 SSBOND 9 CYS A 377 CYS A 467 1555 1555 2.04 SSBOND 10 CYS A 477 CYS A 483 1555 1555 2.04 LINK MG MG A1488 O ASN A 121 1555 1555 2.36 LINK MG MG A1488 O SER A 115 1555 1555 2.27 LINK MG MG A1488 O ILE A 118 1555 1555 2.42 LINK MG MG A1488 O HOH A2054 1555 1555 2.45 LINK MG MG A1488 O HOH A2061 1555 1555 2.40 LINK MG MG A1488 O HOH A2062 1555 1555 2.45 SITE 1 AC1 6 SER A 115 ILE A 118 ASN A 121 HOH A2054 SITE 2 AC1 6 HOH A2061 HOH A2062 SITE 1 AC2 8 PHE A 289 SER A 290 GLU A 299 ALA A 301 SITE 2 AC2 8 PRO A 302 PRO A 303 TYR A 305 HOH A2166 SITE 1 AC3 2 VAL A 385 HOH A2267 SITE 1 AC4 3 ARG A 136 PHE A 209 PRO A 211 SITE 1 AC5 7 GLU A 37 LYS A 40 ASN A 42 GLU A 45 SITE 2 AC5 7 ASP A 255 ILE A 259 HOH A2020 SITE 1 AC6 8 ALA A 125 ASN A 126 GLY A 127 ASN A 184 SITE 2 AC6 8 ASP A 277 PHE A 279 SER A 291 MET A 400 CRYST1 93.248 93.248 126.980 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010724 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007875 0.00000