PDB Short entry for 2Y1N HEADER LIGASE/TRANSFERASE 08-DEC-10 2Y1N TITLE STRUCTURE OF C-CBL-ZAP-70 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 47-435; COMPND 5 SYNONYM: CBL C-CBL, CASITAS B-LINEAGE LYMPHOMA PROTO-ONCOGENE, COMPND 6 PROTO-ONCOGENE C-CBL, RING FINGER PROTEIN 55, SIGNAL TRANSDUCTION COMPND 7 PROTEIN CBL; COMPND 8 EC: 6.3.2.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: TYROSINE-PROTEIN KINASE ZAP-70 ZAP-70,70 KDA COMPND 12 ZETA-ASSOCIATED PROTEIN, SYK-RELATED TYROSINE KINASE; COMPND 13 CHAIN: B, D; COMPND 14 FRAGMENT: PEPTIDE, RESIDUES 286-297; COMPND 15 EC: 2.7.10.2; COMPND 16 OTHER_DETAILS: ZAP-70 PEPTIDE (TLNSDG(P)YTPEPA) WITH COMPND 17 PHOSPHOTYROSINE AT POSITION 7 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX4T1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS LIGASE-TRANSFERASE COMPLEX, UBIQUITIN RING E3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.DOU,G.J.SIBBET,D.T.HUANG REVDAT 3 15-FEB-12 2Y1N 1 JRNL REVDAT 2 25-JAN-12 2Y1N 1 JRNL REVDAT 1 18-JAN-12 2Y1N 0 JRNL AUTH H.DOU,L.BUETOW,A.HOCK,G.J.SIBBET,K.H.VOUSDEN,D.T.HUANG JRNL TITL STRUCTURAL BASIS FOR AUTOINHIBITION AND PHOSPHORYLATION- JRNL TITL 2 DEPENDENT ACTIVATION OF C-CBL. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 184 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22266821 JRNL DOI 10.1038/NSMB.2231 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.999 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.423 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.36 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.88 REMARK 3 NUMBER OF REFLECTIONS : 63238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1590 REMARK 3 R VALUE (WORKING SET) : 0.1582 REMARK 3 FREE R VALUE : 0.1804 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 3219 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4437 - 5.4162 0.95 3027 164 0.1284 0.1503 REMARK 3 2 5.4162 - 4.3033 0.94 2998 176 0.1112 0.1340 REMARK 3 3 4.3033 - 3.7606 0.95 3006 161 0.1116 0.1569 REMARK 3 4 3.7606 - 3.4173 0.95 3041 148 0.1291 0.1519 REMARK 3 5 3.4173 - 3.1727 0.96 3023 142 0.1461 0.1592 REMARK 3 6 3.1727 - 2.9858 0.95 3001 167 0.1706 0.1792 REMARK 3 7 2.9858 - 2.8364 0.95 2979 155 0.1754 0.1960 REMARK 3 8 2.8364 - 2.7130 0.95 3008 165 0.1826 0.2192 REMARK 3 9 2.7130 - 2.6087 0.95 3001 160 0.1885 0.2141 REMARK 3 10 2.6087 - 2.5187 0.95 2986 166 0.1924 0.2001 REMARK 3 11 2.5187 - 2.4400 0.95 3031 148 0.1939 0.2226 REMARK 3 12 2.4400 - 2.3703 0.95 2993 171 0.1945 0.2154 REMARK 3 13 2.3703 - 2.3079 0.95 3010 153 0.2036 0.2150 REMARK 3 14 2.3079 - 2.2516 0.94 2970 177 0.2162 0.2211 REMARK 3 15 2.2516 - 2.2004 0.95 2997 165 0.2135 0.2381 REMARK 3 16 2.2004 - 2.1536 0.95 3002 157 0.2085 0.2356 REMARK 3 17 2.1536 - 2.1106 0.95 2984 150 0.2141 0.2442 REMARK 3 18 2.1106 - 2.0707 0.95 2997 162 0.2378 0.2240 REMARK 3 19 2.0707 - 2.0338 0.94 2961 170 0.2501 0.2623 REMARK 3 20 2.0338 - 1.9993 0.94 2978 162 0.2618 0.2704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.327 REMARK 3 B_SOL : 30.127 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.0461 REMARK 3 B22 (A**2) : 5.0461 REMARK 3 B33 (A**2) : -10.0922 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.395 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6434 REMARK 3 ANGLE : 1.142 8695 REMARK 3 CHIRALITY : 0.069 928 REMARK 3 PLANARITY : 0.006 1114 REMARK 3 DIHEDRAL : 16.140 2406 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES OMITTED DUE TO POORLY DEFINED REMARK 3 ELECTRON DENSITY. CHAIN A RESIDUES 355-361, CHAIN C RESIDUES 355-358 REMARK 3 CHAINS B AND D RESIDUES 1-3. DUE TO POORLY DEFINED ELECTRON REMARK 3 DENSITY, LYS53 AND LYS54 IN CHAINS A AND C WERE BUILT AS ALANINES. REMARK 4 REMARK 4 2Y1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-10. REMARK 100 THE PDBE ID CODE IS EBI-46644. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : SYNCHROTRON REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.00 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.8 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 30.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.4 REMARK 200 R MERGE FOR SHELL (I) : 0.52 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CBL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18-20% (W/V) PEG 3350, 0.2 M REMARK 280 AMMONIUM FORMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.39933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.19967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.79950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.59983 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 157.99917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 47 REMARK 465 PRO A 48 REMARK 465 GLY A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 PRO A 355 REMARK 465 THR A 356 REMARK 465 PRO A 357 REMARK 465 GLN A 358 REMARK 465 ASP A 359 REMARK 465 HIS A 360 REMARK 465 ILE A 361 REMARK 465 THR B 1 REMARK 465 LEU B 2 REMARK 465 ASN B 3 REMARK 465 PRO C 47 REMARK 465 PRO C 48 REMARK 465 GLY C 49 REMARK 465 THR C 50 REMARK 465 VAL C 51 REMARK 465 PRO C 355 REMARK 465 THR C 356 REMARK 465 PRO C 357 REMARK 465 GLN C 358 REMARK 465 THR D 1 REMARK 465 LEU D 2 REMARK 465 ASN D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 LYS C 53 CG CD CE NZ REMARK 470 LYS C 54 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 103 108.45 -58.19 REMARK 500 LYS A 137 -130.83 48.79 REMARK 500 ASN A 233 13.13 -143.38 REMARK 500 ALA A 262 -62.07 -107.62 REMARK 500 PRO A 288 154.60 -49.97 REMARK 500 ASN A 321 -7.59 76.05 REMARK 500 TYR A 337 79.99 -111.66 REMARK 500 GLU A 386 -44.25 -133.98 REMARK 500 MET A 400 -171.58 -173.40 REMARK 500 ARG A 420 -4.69 78.32 REMARK 500 ALA C 76 44.05 77.15 REMARK 500 ASN C 79 -4.55 -56.88 REMARK 500 LYS C 137 -130.07 51.98 REMARK 500 PHE C 169 69.99 -112.82 REMARK 500 SER C 171 10.86 59.68 REMARK 500 PHE C 174 103.74 -58.44 REMARK 500 ASN C 233 15.12 -143.41 REMARK 500 PRO C 288 155.88 -44.33 REMARK 500 GLU C 386 -44.81 -130.49 REMARK 500 GLN C 414 -8.93 -54.95 REMARK 500 ARG C 420 1.19 82.82 REMARK 500 ASP D 5 -1.04 -141.68 REMARK 500 PRO D 11 152.85 -47.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1436 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 384 SG REMARK 620 2 CYS A 404 SG 105.6 REMARK 620 3 CYS A 381 SG 106.4 117.6 REMARK 620 4 CYS A 401 SG 110.3 101.4 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1436 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 381 SG REMARK 620 2 CYS C 404 SG 113.6 REMARK 620 3 CYS C 401 SG 114.2 105.4 REMARK 620 4 CYS C 384 SG 104.3 105.3 113.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1437 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 419 SG REMARK 620 2 CYS A 416 SG 108.6 REMARK 620 3 CYS A 396 SG 109.2 110.5 REMARK 620 4 HIS A 398 ND1 107.8 108.6 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1437 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 398 ND1 REMARK 620 2 CYS C 419 SG 110.4 REMARK 620 3 CYS C 396 SG 108.4 110.4 REMARK 620 4 CYS C 416 SG 112.4 110.3 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1438 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 240 OE1 REMARK 620 2 ASP A 229 OD1 110.6 REMARK 620 3 THR A 231 OG1 115.6 93.8 REMARK 620 4 GLU A 240 OE2 47.3 82.2 81.4 REMARK 620 5 ASN A 233 OD1 149.2 96.9 74.6 155.9 REMARK 620 6 TYR A 235 O 74.0 93.0 165.1 112.7 91.4 REMARK 620 7 HOH A2071 O 62.7 167.0 80.3 85.4 92.8 95.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1438 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 240 OE1 REMARK 620 2 GLU C 240 OE2 47.0 REMARK 620 3 ASP C 229 OD1 125.0 88.0 REMARK 620 4 THR C 231 OG1 103.3 80.2 96.2 REMARK 620 5 ASN C 233 OD1 141.7 154.5 93.0 74.3 REMARK 620 6 TYR C 235 O 81.7 118.8 101.6 154.1 86.0 REMARK 620 7 HOH C2080 O 60.0 89.0 166.8 70.6 84.3 91.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1436 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1437 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1438 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C1438 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CBL RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF CBL IN COMPLEX WITH ITS BINDING REMARK 900 SITE ON ZAP-70 REMARK 900 RELATED ID: 4A4B RELATED DB: PDB REMARK 900 STRUCTURE OF MODIFIED PHOSPHOTYR371-C-CBL-UBCH5B-ZAP- REMARK 900 70 COMPLEX REMARK 900 RELATED ID: 4A4C RELATED DB: PDB REMARK 900 STRUCTURE OF PHOSPHOTYR371-C-CBL-UBCH5B-ZAP-70 COMPLEX REMARK 900 RELATED ID: 1M61 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO SH2 DOMAINS OF ZAP-70 REMARK 900 RELATED ID: 4A49 RELATED DB: PDB REMARK 900 STRUCTURE OF PHOSPHOTYR371-C-CBL-UBCH5B COMPLEX REMARK 900 RELATED ID: 2Y1M RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE C-CBL REMARK 900 RELATED ID: 1B47 RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF CBL IN COMPLEX REMARK 900 WITH ITS BINDING SITE IN ZAP-70 REMARK 900 RELATED ID: 1U59 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ZAP-70 KINASE DOMAIN IN REMARK 900 COMPLEXWITH STAUROSPORINE REMARK 900 RELATED ID: 1FBV RELATED DB: PDB REMARK 900 STRUCTURE OF A CBL-UBCH7 COMPLEX: RING DOMAIN FUNCTION REMARK 900 INUBIQUITIN-PROTEIN LIGASES REMARK 900 RELATED ID: 1YVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-CBL TKB DOMAIN IN COMPLEX REMARK 900 WITHTHE APS PTYR-618 PHOSPHOPEPTIDE DBREF 2Y1N A 47 435 UNP P22681 CBL_HUMAN 47 435 DBREF 2Y1N B 1 12 UNP P43403 ZAP70_HUMAN 286 297 DBREF 2Y1N C 47 435 UNP P22681 CBL_HUMAN 47 435 DBREF 2Y1N D 1 12 UNP P43403 ZAP70_HUMAN 286 297 SEQRES 1 A 389 PRO PRO GLY THR VAL ASP LYS LYS MET VAL GLU LYS CYS SEQRES 2 A 389 TRP LYS LEU MET ASP LYS VAL VAL ARG LEU CYS GLN ASN SEQRES 3 A 389 PRO LYS LEU ALA LEU LYS ASN SER PRO PRO TYR ILE LEU SEQRES 4 A 389 ASP LEU LEU PRO ASP THR TYR GLN HIS LEU ARG THR ILE SEQRES 5 A 389 LEU SER ARG TYR GLU GLY LYS MET GLU THR LEU GLY GLU SEQRES 6 A 389 ASN GLU TYR PHE ARG VAL PHE MET GLU ASN LEU MET LYS SEQRES 7 A 389 LYS THR LYS GLN THR ILE SER LEU PHE LYS GLU GLY LYS SEQRES 8 A 389 GLU ARG MET TYR GLU GLU ASN SER GLN PRO ARG ARG ASN SEQRES 9 A 389 LEU THR LYS LEU SER LEU ILE PHE SER HIS MET LEU ALA SEQRES 10 A 389 GLU LEU LYS GLY ILE PHE PRO SER GLY LEU PHE GLN GLY SEQRES 11 A 389 ASP THR PHE ARG ILE THR LYS ALA ASP ALA ALA GLU PHE SEQRES 12 A 389 TRP ARG LYS ALA PHE GLY GLU LYS THR ILE VAL PRO TRP SEQRES 13 A 389 LYS SER PHE ARG GLN ALA LEU HIS GLU VAL HIS PRO ILE SEQRES 14 A 389 SER SER GLY LEU GLU ALA MET ALA LEU LYS SER THR ILE SEQRES 15 A 389 ASP LEU THR CYS ASN ASP TYR ILE SER VAL PHE GLU PHE SEQRES 16 A 389 ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SER SER LEU SEQRES 17 A 389 LEU ARG ASN TRP ASN SER LEU ALA VAL THR HIS PRO GLY SEQRES 18 A 389 TYR MET ALA PHE LEU THR TYR ASP GLU VAL LYS ALA ARG SEQRES 19 A 389 LEU GLN LYS PHE ILE HIS LYS PRO GLY SER TYR ILE PHE SEQRES 20 A 389 ARG LEU SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY SEQRES 21 A 389 TYR VAL THR ALA ASP GLY ASN ILE LEU GLN THR ILE PRO SEQRES 22 A 389 HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE ASP GLY PHE SEQRES 23 A 389 ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY ARG ASN GLN SEQRES 24 A 389 ASN PRO ASP LEU THR GLY LEU CYS GLU PRO THR PRO GLN SEQRES 25 A 389 ASP HIS ILE LYS VAL THR GLN GLU GLN TYR GLU LEU TYR SEQRES 26 A 389 CYS GLU MET GLY SER THR PHE GLN LEU CYS LYS ILE CYS SEQRES 27 A 389 ALA GLU ASN ASP LYS ASP VAL LYS ILE GLU PRO CYS GLY SEQRES 28 A 389 HIS LEU MET CYS THR SER CYS LEU THR SER TRP GLN GLU SEQRES 29 A 389 SER GLU GLY GLN GLY CYS PRO PHE CYS ARG CYS GLU ILE SEQRES 30 A 389 LYS GLY THR GLU PRO ILE VAL VAL ASP PRO PHE ASP SEQRES 1 B 12 THR LEU ASN SER ASP GLY PTR THR PRO GLU PRO ALA SEQRES 1 C 389 PRO PRO GLY THR VAL ASP LYS LYS MET VAL GLU LYS CYS SEQRES 2 C 389 TRP LYS LEU MET ASP LYS VAL VAL ARG LEU CYS GLN ASN SEQRES 3 C 389 PRO LYS LEU ALA LEU LYS ASN SER PRO PRO TYR ILE LEU SEQRES 4 C 389 ASP LEU LEU PRO ASP THR TYR GLN HIS LEU ARG THR ILE SEQRES 5 C 389 LEU SER ARG TYR GLU GLY LYS MET GLU THR LEU GLY GLU SEQRES 6 C 389 ASN GLU TYR PHE ARG VAL PHE MET GLU ASN LEU MET LYS SEQRES 7 C 389 LYS THR LYS GLN THR ILE SER LEU PHE LYS GLU GLY LYS SEQRES 8 C 389 GLU ARG MET TYR GLU GLU ASN SER GLN PRO ARG ARG ASN SEQRES 9 C 389 LEU THR LYS LEU SER LEU ILE PHE SER HIS MET LEU ALA SEQRES 10 C 389 GLU LEU LYS GLY ILE PHE PRO SER GLY LEU PHE GLN GLY SEQRES 11 C 389 ASP THR PHE ARG ILE THR LYS ALA ASP ALA ALA GLU PHE SEQRES 12 C 389 TRP ARG LYS ALA PHE GLY GLU LYS THR ILE VAL PRO TRP SEQRES 13 C 389 LYS SER PHE ARG GLN ALA LEU HIS GLU VAL HIS PRO ILE SEQRES 14 C 389 SER SER GLY LEU GLU ALA MET ALA LEU LYS SER THR ILE SEQRES 15 C 389 ASP LEU THR CYS ASN ASP TYR ILE SER VAL PHE GLU PHE SEQRES 16 C 389 ASP ILE PHE THR ARG LEU PHE GLN PRO TRP SER SER LEU SEQRES 17 C 389 LEU ARG ASN TRP ASN SER LEU ALA VAL THR HIS PRO GLY SEQRES 18 C 389 TYR MET ALA PHE LEU THR TYR ASP GLU VAL LYS ALA ARG SEQRES 19 C 389 LEU GLN LYS PHE ILE HIS LYS PRO GLY SER TYR ILE PHE SEQRES 20 C 389 ARG LEU SER CYS THR ARG LEU GLY GLN TRP ALA ILE GLY SEQRES 21 C 389 TYR VAL THR ALA ASP GLY ASN ILE LEU GLN THR ILE PRO SEQRES 22 C 389 HIS ASN LYS PRO LEU PHE GLN ALA LEU ILE ASP GLY PHE SEQRES 23 C 389 ARG GLU GLY PHE TYR LEU PHE PRO ASP GLY ARG ASN GLN SEQRES 24 C 389 ASN PRO ASP LEU THR GLY LEU CYS GLU PRO THR PRO GLN SEQRES 25 C 389 ASP HIS ILE LYS VAL THR GLN GLU GLN TYR GLU LEU TYR SEQRES 26 C 389 CYS GLU MET GLY SER THR PHE GLN LEU CYS LYS ILE CYS SEQRES 27 C 389 ALA GLU ASN ASP LYS ASP VAL LYS ILE GLU PRO CYS GLY SEQRES 28 C 389 HIS LEU MET CYS THR SER CYS LEU THR SER TRP GLN GLU SEQRES 29 C 389 SER GLU GLY GLN GLY CYS PRO PHE CYS ARG CYS GLU ILE SEQRES 30 C 389 LYS GLY THR GLU PRO ILE VAL VAL ASP PRO PHE ASP SEQRES 1 D 12 THR LEU ASN SER ASP GLY PTR THR PRO GLU PRO ALA MODRES 2Y1N PTR B 7 TYR O-PHOSPHOTYROSINE MODRES 2Y1N PTR D 7 TYR O-PHOSPHOTYROSINE HET PTR B 7 16 HET PTR D 7 16 HET ZN A1436 1 HET ZN A1437 1 HET ZN C1436 1 HET ZN C1437 1 HET CA A1438 1 HET CA C1438 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 5 PTR 2(C9 H12 N O6 P) FORMUL 6 ZN 4(ZN 2+) FORMUL 7 CA 2(CA 2+) FORMUL 8 HOH *340(H2 O) HELIX 1 1 LYS A 53 GLN A 71 1 19 HELIX 2 2 TYR A 83 TYR A 102 1 20 HELIX 3 3 LYS A 105 ASN A 112 1 8 HELIX 4 4 ASN A 112 LYS A 137 1 26 HELIX 5 5 GLU A 138 GLU A 142 5 5 HELIX 6 6 SER A 145 PHE A 169 1 25 HELIX 7 7 PRO A 170 LEU A 173 5 4 HELIX 8 8 GLN A 175 PHE A 179 5 5 HELIX 9 9 LYS A 183 GLY A 195 1 13 HELIX 10 10 TRP A 202 GLU A 211 1 10 HELIX 11 11 SER A 217 ASP A 229 1 13 HELIX 12 12 VAL A 238 PHE A 248 1 11 HELIX 13 13 PRO A 250 SER A 252 5 3 HELIX 14 14 SER A 253 ALA A 262 1 10 HELIX 15 15 THR A 273 GLN A 282 1 10 HELIX 16 16 LYS A 283 ILE A 285 5 3 HELIX 17 17 PRO A 323 GLU A 334 1 12 HELIX 18 18 THR A 364 MET A 374 1 11 HELIX 19 19 CYS A 401 GLU A 412 1 12 HELIX 20 20 ASP C 52 ASN C 72 1 21 HELIX 21 21 TYR C 83 TYR C 102 1 20 HELIX 22 22 LYS C 105 ASN C 112 1 8 HELIX 23 23 ASN C 112 LYS C 137 1 26 HELIX 24 24 GLU C 138 GLU C 142 5 5 HELIX 25 25 SER C 145 PHE C 169 1 25 HELIX 26 26 PRO C 170 LEU C 173 5 4 HELIX 27 27 LYS C 183 GLY C 195 1 13 HELIX 28 28 TRP C 202 GLU C 211 1 10 HELIX 29 29 SER C 217 ASP C 229 1 13 HELIX 30 30 VAL C 238 PHE C 248 1 11 HELIX 31 31 PRO C 250 SER C 252 5 3 HELIX 32 32 SER C 253 ALA C 262 1 10 HELIX 33 33 THR C 273 LEU C 281 1 9 HELIX 34 34 PRO C 323 GLU C 334 1 12 HELIX 35 35 THR C 364 MET C 374 1 11 HELIX 36 36 CYS C 401 GLU C 412 1 12 SHEET 1 AA 2 ILE A 199 PRO A 201 0 SHEET 2 AA 2 TYR A 235 SER A 237 -1 O ILE A 236 N VAL A 200 SHEET 1 AB 4 ILE A 314 THR A 317 0 SHEET 2 AB 4 TRP A 303 VAL A 308 -1 O ILE A 305 N THR A 317 SHEET 3 AB 4 SER A 290 LEU A 295 -1 O SER A 290 N VAL A 308 SHEET 4 AB 4 PHE A 339 PRO A 340 SHEET 1 AC 3 LEU A 399 MET A 400 0 SHEET 2 AC 3 VAL A 391 GLU A 394 -1 O VAL A 391 N MET A 400 SHEET 3 AC 3 GLY A 425 PRO A 428 -1 O GLY A 425 N GLU A 394 SHEET 1 CA 2 ILE C 199 PRO C 201 0 SHEET 2 CA 2 TYR C 235 SER C 237 -1 O ILE C 236 N VAL C 200 SHEET 1 CB 4 ILE C 314 THR C 317 0 SHEET 2 CB 4 TRP C 303 VAL C 308 -1 O ILE C 305 N THR C 317 SHEET 3 CB 4 SER C 290 LEU C 295 -1 O SER C 290 N VAL C 308 SHEET 4 CB 4 PHE C 339 PRO C 340 SHEET 1 CC 3 LEU C 399 MET C 400 0 SHEET 2 CC 3 VAL C 391 GLU C 394 -1 O VAL C 391 N MET C 400 SHEET 3 CC 3 GLY C 425 PRO C 428 -1 O GLY C 425 N GLU C 394 LINK ZN ZN A1436 SG CYS A 384 1555 1555 2.44 LINK ZN ZN A1436 SG CYS A 404 1555 1555 2.27 LINK ZN ZN A1436 SG CYS A 381 1555 1555 2.43 LINK ZN ZN A1436 SG CYS A 401 1555 1555 2.33 LINK ZN ZN A1437 SG CYS A 419 1555 1555 2.34 LINK ZN ZN A1437 SG CYS A 416 1555 1555 2.36 LINK ZN ZN A1437 SG CYS A 396 1555 1555 2.31 LINK ZN ZN A1437 ND1 HIS A 398 1555 1555 2.11 LINK CA CA A1438 O HOH A2071 1555 1555 2.70 LINK CA CA A1438 O TYR A 235 1555 1555 2.45 LINK CA CA A1438 OD1 ASN A 233 1555 1555 2.48 LINK CA CA A1438 OE2 GLU A 240 1555 1555 2.66 LINK CA CA A1438 OG1 THR A 231 1555 1555 2.61 LINK CA CA A1438 OD1 ASP A 229 1555 1555 2.68 LINK CA CA A1438 OE1 GLU A 240 1555 1555 2.82 LINK C GLY B 6 N PTR B 7 1555 1555 1.33 LINK C PTR B 7 N THR B 8 1555 1555 1.32 LINK ZN ZN C1436 SG CYS C 384 1555 1555 2.34 LINK ZN ZN C1436 SG CYS C 401 1555 1555 2.28 LINK ZN ZN C1436 SG CYS C 381 1555 1555 2.29 LINK ZN ZN C1436 SG CYS C 404 1555 1555 2.46 LINK ZN ZN C1437 SG CYS C 416 1555 1555 2.49 LINK ZN ZN C1437 SG CYS C 396 1555 1555 2.31 LINK ZN ZN C1437 SG CYS C 419 1555 1555 2.46 LINK ZN ZN C1437 ND1 HIS C 398 1555 1555 2.19 LINK CA CA C1438 OE1 GLU C 240 1555 1555 2.70 LINK CA CA C1438 OG1 THR C 231 1555 1555 2.55 LINK CA CA C1438 OE2 GLU C 240 1555 1555 2.80 LINK CA CA C1438 OD1 ASP C 229 1555 1555 2.61 LINK CA CA C1438 OD1 ASN C 233 1555 1555 2.48 LINK CA CA C1438 O HOH C2080 1555 1555 2.99 LINK CA CA C1438 O TYR C 235 1555 1555 2.52 LINK C GLY D 6 N PTR D 7 1555 1555 1.33 LINK C PTR D 7 N THR D 8 1555 1555 1.33 CISPEP 1 PRO A 81 PRO A 82 0 5.84 CISPEP 2 GLN A 249 PRO A 250 0 0.38 CISPEP 3 GLU A 394 PRO A 395 0 4.06 CISPEP 4 PRO C 81 PRO C 82 0 3.82 CISPEP 5 GLN C 249 PRO C 250 0 4.75 CISPEP 6 GLU C 394 PRO C 395 0 8.62 SITE 1 AC1 4 CYS A 381 CYS A 384 CYS A 401 CYS A 404 SITE 1 AC2 4 CYS A 396 HIS A 398 CYS A 416 CYS A 419 SITE 1 AC3 4 CYS C 381 CYS C 384 CYS C 401 CYS C 404 SITE 1 AC4 4 CYS C 396 HIS C 398 CYS C 416 CYS C 419 SITE 1 AC5 6 ASP A 229 THR A 231 ASN A 233 TYR A 235 SITE 2 AC5 6 GLU A 240 HOH A2071 SITE 1 AC6 6 ASP C 229 THR C 231 ASN C 233 TYR C 235 SITE 2 AC6 6 GLU C 240 HOH C2080 CRYST1 93.570 93.570 189.599 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010687 0.006170 0.000000 0.00000 SCALE2 0.000000 0.012340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005274 0.00000