PDB Short entry for 2Y3L HEADER PROTEIN FIBRIL 21-DEC-10 2Y3L TITLE STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA PEPTIDE (AB, TITLE 2 RESIDUES 35-42), ALTERNATE POLYMORPH 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLOID BETA A4 PROTEIN; COMPND 3 CHAIN: A, B, C, G; COMPND 4 FRAGMENT: RESIDUES 706-713; COMPND 5 SYNONYM: AMYLOID BETA PEPTIDE, ABPP, APPI, APP, ALZHEIMER DISEASE COMPND 6 AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, COMPND 7 PROTEASE NEXIN-II, PN-II SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 ORGAN: BRAIN; SOURCE 7 CELL: NEURON KEYWDS PROTEIN FIBRIL, ALZHEIMER DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.COLLETIER,A.LAGANOWSKY,M.R.SAWAYA,D.EISENBERG REVDAT 1 02-NOV-11 2Y3L 0 JRNL AUTH J.COLLETIER,A.LAGANOWSKY,M.LANDAU,M.ZHAO,A.B.SORIAGA, JRNL AUTH 2 L.GOLDSCHMIDT,D.FLOT,D.CASCIO,M.R.SAWAYA,D.EISENBERG JRNL TITL MOLECULAR BASIS FOR AMYLOID-{BETA} POLYMORPHISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 16938 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21949245 JRNL DOI 10.1073/PNAS.1112600108 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0085 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 88.94 REMARK 3 NUMBER OF REFLECTIONS : 896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20435 REMARK 3 R VALUE (WORKING SET) : 0.20165 REMARK 3 FREE R VALUE : 0.24699 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.6 REMARK 3 FREE R VALUE TEST SET COUNT : 53 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.101 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.155 REMARK 3 REFLECTION IN BIN (WORKING SET) : 65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.222 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.222 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.899 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26 REMARK 3 B22 (A**2) : -0.58 REMARK 3 B33 (A**2) : 0.27 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.10 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.717 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.151 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 200 ; 0.024 ; 0.023 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 268 ; 2.896 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 28 ;11.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 32 ;16.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 40 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 128 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2Y3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-11. REMARK 100 THE PDBE ID CODE IS EBI-46809. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 315) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.10 REMARK 200 RESOLUTION RANGE LOW (A) : 23.80 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 1.90 REMARK 200 R MERGE (I) : 0.14 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 2.54 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.91 REMARK 200 R MERGE FOR SHELL (I) : 0.43 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.55 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 10.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AB3542 CRYSTALS (FIRST DISSOLVED IN REMARK 280 WATER) WERE FOUND IN 1.5-YEAR-OLD TRAYS SET AT 0.5 MG/ML IN REMARK 280 0.1 M HEPES PH 7.5, 0.5 M MG FORMATE (CRYSTAL FORM II) REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.79500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N VAL A 2 O ILE C 7 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL G 6 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UOA RELATED DB: PDB REMARK 900 AFTER 3NS REMARK 900 RELATED ID: 1TAW RELATED DB: PDB REMARK 900 BOVINE TRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 2Y3J RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT AIIGLM FROM THE AMYLOID-BETA REMARK 900 PEPTIDE (AB, RESIDUES 30-35) REMARK 900 RELATED ID: 1TKN RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF CAPPD*, AN INDEPENDENTLY REMARK 900 FOLDEDEXTRACELLULAR DOMAIN OF HUMAN AMYLOID-BETA REMARK 900 PRECURSORPROTEIN REMARK 900 RELATED ID: 1QCM RELATED DB: PDB REMARK 900 AMYLOID BETA PEPTIDE (25-35), NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1BA6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE METHIONINE-OXIDIZED AMYLOID REMARK 900 BETA-PEPTIDE (1-40). DOES OXIDATION AFFECT REMARK 900 CONFORMATIONAL SWITCHING? NMR, 10 STRUCTURES REMARK 900 RELATED ID: 1QYT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF FRAGMENT (25-35) OF BETA REMARK 900 AMYLOIDPEPTIDE IN SDS MICELLAR SOLUTION REMARK 900 RELATED ID: 1BJB RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[E16], RESIDUES REMARK 900 1-28, 14 STRUCTURES REMARK 900 RELATED ID: 2Y2A RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA REMARK 900 PEPTIDE (AB, RESIDUES 16-21), ALTERNATE POLYMORPH I REMARK 900 RELATED ID: 2Y3K RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT MVGGVVIA FROM THE AMYLOID-BETA REMARK 900 PEPTIDE (AB, RESIDUES 35-42), ALTERNATE POLYMORPH 1 REMARK 900 RELATED ID: 1CA0 RELATED DB: PDB REMARK 900 BOVINE CHYMOTRYPSIN COMPLEXED TO APPI REMARK 900 RELATED ID: 1UO8 RELATED DB: PDB REMARK 900 AFTER 2NS REMARK 900 RELATED ID: 1BRC RELATED DB: PDB REMARK 900 RELATED ID: 1BA4 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF AMYLOID BETA-PEPTIDE (1-40 REMARK 900 ) IN A WATER-MICELLE ENVIRONMENT. IS THE MEMBRANE- REMARK 900 SPANNING DOMAIN WHERE WE THINK IT IS? NMR, 10 REMARK 900 STRUCTURES REMARK 900 RELATED ID: 1AAP RELATED DB: PDB REMARK 900 RELATED ID: 2WK3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN INSULIN-DEGRADING ENZYME IN REMARK 900 COMPLEX WITH AMYLOID-BETA (1-42) REMARK 900 RELATED ID: 1QWP RELATED DB: PDB REMARK 900 NMR ANALYSIS OF 25-35 FRAGMENT OF BETA AMYLOID REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1X11 RELATED DB: PDB REMARK 900 X11 PTB DOMAIN REMARK 900 RELATED ID: 1ZE9 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID REMARK 900 BETA-PEPTIDE COMPLEXED WITH A ZINC (II) CATION REMARK 900 RELATED ID: 1QXC RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FRAGMENT 25-35 OF BETA AMYLOID REMARK 900 PEPTIDEIN 20/80 V:V HEXAFLUOROISOPROPANOL/WATER REMARK 900 MIXTURE REMARK 900 RELATED ID: 1IYT RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID REMARK 900 BETA-PEPTIDE (1-42) REMARK 900 RELATED ID: 1ZE7 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID REMARK 900 BETA-PEPTIDE IN WATER SOLUTION AT PH 6.5 REMARK 900 RELATED ID: 2BEG RELATED DB: PDB REMARK 900 3D STRUCTURE OF ALZHEIMER'S ABETA(1-42) FIBRILS REMARK 900 RELATED ID: 1UOI RELATED DB: PDB REMARK 900 AFTER 4NS REMARK 900 RELATED ID: 1AMB RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - REMARK 900 28) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1RW6 RELATED DB: PDB REMARK 900 HUMAN APP CORE DOMAIN REMARK 900 RELATED ID: 1UO7 RELATED DB: PDB REMARK 900 MOLECULAR DYNAMICS SIMULATION OF AMYLOID BETA 1-42 ( REMARK 900 PDB: 1IYT) IN WATER REMARK 900 RELATED ID: 1OWT RELATED DB: PDB REMARK 900 STRUCTURE OF THE ALZHEIMER'S DISEASE AMYLOID REMARK 900 PRECURSORPROTEIN COPPER BINDING DOMAIN REMARK 900 RELATED ID: 1AML RELATED DB: PDB REMARK 900 THE ALZHEIMER'S DISEASE AMYLOID A4 PEPTIDE (RESIDUES 1 REMARK 900 -40) REMARK 900 RELATED ID: 1AMC RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID BETA-PEPTIDE (RESIDUES 1 - REMARK 900 28) (NMR, 5 STRUCTURES) REMARK 900 RELATED ID: 2BP4 RELATED DB: PDB REMARK 900 ZINC-BINDING DOMAIN OF ALZHEIMER'S DISEASE AMYLOID REMARK 900 BETA-PEPTIDE IN TFE-WATER (80-20) SOLUTION REMARK 900 RELATED ID: 1ZJD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF REMARK 900 COAGULATIONFACTOR XI IN COMPLEX WITH KUNITZ PROTEASE REMARK 900 INHIBITOR DOMAINOF PROTEASE NEXIN II REMARK 900 RELATED ID: 2BOM RELATED DB: PDB REMARK 900 MODEL OF ALZHEIMER'S DISEASE AMYLOID-SS PEPTIDE BASED REMARK 900 ON A RNA BINDING PROTEIN REMARK 900 RELATED ID: 1BJC RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF AMYLOID BETA[F16], RESIDUES REMARK 900 1-28, 15 STRUCTURES REMARK 900 RELATED ID: 1MWP RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE AMYLOID PRECURSOR PROTEIN REMARK 900 RELATED ID: 2Y29 RELATED DB: PDB REMARK 900 STRUCTURE OF SEGMENT KLVFFA FROM THE AMYLOID-BETA REMARK 900 PEPTIDE (AB, RESIDUES 16-21), ALTERNATE POLYMORPH III REMARK 900 RELATED ID: 1HZ3 RELATED DB: PDB REMARK 900 ALZHEIMER'S DISEASE AMYLOID-BETA PEPTIDE (RESIDUES 10- REMARK 900 35) REMARK 999 REMARK 999 SEQUENCE REMARK 999 AMYLOID BETA PEPTIDE (AB) IS A PROTEOLYTIC PRODUCT OF THE REMARK 999 AMYLOID PRECURSOR PROTEIN (APP). AB SEGMENT 35-MVGGVVIA-42 REMARK 999 CORRESPONDS TO RESIDUES 706-713 OF APP DBREF 2Y3L A 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L B 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L C 1 8 UNP P05067 A4_HUMAN 706 713 DBREF 2Y3L G 1 8 UNP P05067 A4_HUMAN 706 713 SEQRES 1 A 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 B 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 C 8 MET VAL GLY GLY VAL VAL ILE ALA SEQRES 1 G 8 MET VAL GLY GLY VAL VAL ILE ALA SHEET 1 AA 2 GLY A 3 ILE A 7 0 SHEET 2 AA 2 VAL C 2 VAL C 6 -1 O VAL C 2 N ILE A 7 SHEET 1 BA 2 VAL B 2 ILE B 7 0 SHEET 2 BA 2 VAL G 2 ILE G 7 -1 O VAL G 2 N ILE B 7 CISPEP 1 ILE C 7 ALA C 8 0 -5.23 CISPEP 2 ILE G 7 ALA G 8 0 -28.75 CRYST1 9.470 47.590 20.800 90.00 103.57 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.105597 0.000000 0.025488 0.00000 SCALE2 0.000000 0.021013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.049458 0.00000