PDB Short entry for 2YA9 HEADER TRANSFERASE 18-FEB-11 2YA9 TITLE CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE DAPK2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEATH-ASSOCIATED PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 11-370; COMPND 5 SYNONYM: DAP KINASE 2, DAP-KINASE-RELATED PROTEIN 1, DRP-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS RARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTH27 KEYWDS TRANSFERASE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR A.K.PATEL,P.KURSULA REVDAT 2 02-NOV-11 2YA9 1 JRNL REMARK VERSN REVDAT 1 13-APR-11 2YA9 0 JRNL AUTH A.K.PATEL,R.P.YADAV,V.MAJAVA,I.KURSULA,P.KURSULA JRNL TITL STRUCTURE OF THE DIMERIC AUTOINHIBITED CONFORMATION OF JRNL TITL 2 DAPK2, A PRO-APOPTOTIC PROTEIN KINASE. JRNL REF J.MOL.BIOL. V. 409 369 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21497605 JRNL DOI 10.1016/J.JMB.2011.03.065 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.822 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.0 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.15 REMARK 3 NUMBER OF REFLECTIONS : 30476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2087 REMARK 3 R VALUE (WORKING SET) : 0.2059 REMARK 3 FREE R VALUE : 0.2608 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8280 - 5.1121 0.99 2851 151 0.1943 0.2247 REMARK 3 2 5.1121 - 4.0588 0.99 2745 145 0.1539 0.1882 REMARK 3 3 4.0588 - 3.5461 0.79 2151 113 0.1981 0.2268 REMARK 3 4 3.5461 - 3.2220 0.99 2672 141 0.2151 0.2783 REMARK 3 5 3.2220 - 2.9911 0.99 2684 141 0.2105 0.2653 REMARK 3 6 2.9911 - 2.8148 0.99 2666 140 0.2192 0.2764 REMARK 3 7 2.8148 - 2.6739 0.99 2665 140 0.2206 0.2977 REMARK 3 8 2.6739 - 2.5575 0.99 2636 139 0.2312 0.2911 REMARK 3 9 2.5575 - 2.4591 0.99 2629 138 0.2301 0.3216 REMARK 3 10 2.4591 - 2.3742 0.99 2638 139 0.2477 0.3578 REMARK 3 11 2.3742 - 2.3000 0.98 2614 138 0.2557 0.3757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.323 REMARK 3 B_SOL : 26.947 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.33 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.4350 REMARK 3 B22 (A**2) : 9.5266 REMARK 3 B33 (A**2) : -5.0916 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5049 REMARK 3 ANGLE : 0.920 6824 REMARK 3 CHIRALITY : 0.066 766 REMARK 3 PLANARITY : 0.003 882 REMARK 3 DIHEDRAL : 15.838 1914 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 3:37 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3463 -16.8786 29.9754 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.1455 REMARK 3 T33: 0.2387 T12: 0.0128 REMARK 3 T13: -0.0071 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.3061 L22: 0.1776 REMARK 3 L33: 0.1591 L12: -0.1824 REMARK 3 L13: -0.0467 L23: -0.0434 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.0912 S13: -0.1101 REMARK 3 S21: -0.0253 S22: -0.0350 S23: -0.1431 REMARK 3 S31: 0.0861 S32: 0.1220 S33: 0.0505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESSEQ 38:57) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2018 -7.5950 19.8874 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.1503 REMARK 3 T33: 0.1404 T12: 0.0055 REMARK 3 T13: -0.0384 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.0420 L22: 0.0294 REMARK 3 L33: 0.0070 L12: -0.0275 REMARK 3 L13: -0.0037 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.0061 S13: 0.0483 REMARK 3 S21: -0.0205 S22: 0.0415 S23: 0.0642 REMARK 3 S31: 0.0390 S32: -0.0309 S33: -0.0144 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESSEQ 58:174 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9479 -1.2592 38.0696 REMARK 3 T TENSOR REMARK 3 T11: 0.0693 T22: 0.0751 REMARK 3 T33: 0.0688 T12: -0.0108 REMARK 3 T13: 0.0029 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.1429 L22: 0.0642 REMARK 3 L33: 0.1713 L12: 0.0086 REMARK 3 L13: -0.0257 L23: -0.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: -0.0116 S13: 0.0317 REMARK 3 S21: 0.0153 S22: 0.0349 S23: 0.0377 REMARK 3 S31: -0.0023 S32: -0.0081 S33: 0.0805 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND RESSEQ 175:301 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5814 10.7462 41.5858 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0463 REMARK 3 T33: 0.0249 T12: -0.0191 REMARK 3 T13: 0.0155 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.1731 L22: 0.0320 REMARK 3 L33: 0.0600 L12: 0.0462 REMARK 3 L13: -0.0044 L23: 0.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0311 S13: 0.0926 REMARK 3 S21: -0.0132 S22: -0.0218 S23: 0.0495 REMARK 3 S31: -0.0103 S32: -0.0219 S33: 0.0009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND RESSEQ 3:32 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5768 -16.7782 12.3625 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1089 REMARK 3 T33: 0.1734 T12: 0.0062 REMARK 3 T13: -0.0116 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.3390 L22: 0.0778 REMARK 3 L33: 0.2752 L12: 0.0347 REMARK 3 L13: 0.1277 L23: -0.1090 REMARK 3 S TENSOR REMARK 3 S11: 0.0781 S12: -0.1085 S13: -0.0242 REMARK 3 S21: -0.0509 S22: 0.0683 S23: -0.0560 REMARK 3 S31: 0.0273 S32: -0.1218 S33: -0.0318 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND RESSEQ 33:70 REMARK 3 ORIGIN FOR THE GROUP (A): -17.0747 -6.6798 16.5394 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1182 REMARK 3 T33: 0.1660 T12: -0.0136 REMARK 3 T13: -0.0221 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.1946 L22: 0.0719 REMARK 3 L33: 0.1266 L12: 0.0051 REMARK 3 L13: -0.1579 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: -0.0625 S13: 0.0158 REMARK 3 S21: 0.1026 S22: 0.0532 S23: 0.0439 REMARK 3 S31: 0.0187 S32: -0.0281 S33: -0.0602 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND RESSEQ 71:133 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2285 -3.7204 0.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.0385 T22: -0.0818 REMARK 3 T33: 0.0200 T12: 0.0218 REMARK 3 T13: -0.0161 T23: 0.0817 REMARK 3 L TENSOR REMARK 3 L11: 0.1568 L22: 0.1193 REMARK 3 L33: 0.2577 L12: 0.0280 REMARK 3 L13: -0.0894 L23: 0.0779 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: 0.1005 S13: -0.0472 REMARK 3 S21: 0.0237 S22: 0.0853 S23: -0.1420 REMARK 3 S31: -0.1401 S32: 0.0455 S33: 0.1713 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND RESSEQ 134:183 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1636 2.4248 5.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.1157 T22: 0.1291 REMARK 3 T33: 0.0826 T12: 0.0159 REMARK 3 T13: -0.0097 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.1730 L22: 0.0767 REMARK 3 L33: 0.0981 L12: 0.0386 REMARK 3 L13: 0.0654 L23: -0.0510 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: -0.0767 S13: -0.0443 REMARK 3 S21: 0.0458 S22: 0.0309 S23: -0.0564 REMARK 3 S31: -0.0798 S32: 0.0346 S33: 0.0173 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND RESSEQ 184:245 REMARK 3 ORIGIN FOR THE GROUP (A): 4.9461 10.6449 4.7853 REMARK 3 T TENSOR REMARK 3 T11: 0.1203 T22: 0.0992 REMARK 3 T33: 0.0887 T12: -0.0138 REMARK 3 T13: 0.0391 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.1621 L22: 0.1252 REMARK 3 L33: 0.7803 L12: -0.0013 REMARK 3 L13: -0.0571 L23: 0.0681 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.0415 S13: 0.0714 REMARK 3 S21: 0.1179 S22: -0.0410 S23: 0.0670 REMARK 3 S31: -0.1472 S32: 0.2791 S33: -0.0339 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND RESSEQ 246:265 REMARK 3 ORIGIN FOR THE GROUP (A): -0.1334 17.8209 -1.9739 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.0352 REMARK 3 T33: 0.1063 T12: -0.0522 REMARK 3 T13: 0.0399 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0611 REMARK 3 L33: 0.1108 L12: -0.0221 REMARK 3 L13: 0.0049 L23: 0.0114 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: 0.0233 S13: 0.0595 REMARK 3 S21: 0.0215 S22: 0.0683 S23: 0.0244 REMARK 3 S31: -0.0520 S32: -0.0435 S33: 0.0464 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND RESSEQ 266:279 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0584 14.3826 -11.2480 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.1460 REMARK 3 T33: 0.1092 T12: -0.0067 REMARK 3 T13: -0.0385 T23: 0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.0004 L22: 0.0195 REMARK 3 L33: 0.0391 L12: -0.0007 REMARK 3 L13: 0.0014 L23: 0.0262 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.0790 S13: -0.0010 REMARK 3 S21: -0.0091 S22: -0.0053 S23: 0.0260 REMARK 3 S31: 0.0099 S32: 0.0193 S33: -0.0126 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND RESSEQ 280:301 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5415 3.3906 -12.2216 REMARK 3 T TENSOR REMARK 3 T11: 0.1297 T22: 0.2869 REMARK 3 T33: 0.0999 T12: -0.0020 REMARK 3 T13: 0.0559 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 0.0448 L22: 0.1418 REMARK 3 L33: 0.0900 L12: 0.0105 REMARK 3 L13: 0.0446 L23: -0.0655 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: 0.0481 S13: -0.0392 REMARK 3 S21: 0.0068 S22: -0.0643 S23: -0.0762 REMARK 3 S31: -0.0932 S32: 0.0222 S33: -0.0422 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE C-TERMINAL 59 RESIDUES ARE NOT VISIBLE REMARK 3 IN ELECTRON DENSITY, MOST LIKELY THE C-TERMINAL TAIL HAS DEGRADED REMARK 3 DURING CRYSTALLIZATION. REMARK 4 REMARK 4 2YA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-FEB-11. REMARK 100 THE PDBE ID CODE IS EBI-47431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM 4) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30489 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 7.9 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.1 REMARK 200 R MERGE FOR SHELL (I) : 0.44 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2A2A REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.13500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.13500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 302 REMARK 465 ARG A 303 REMARK 465 ARG A 304 REMARK 465 TRP A 305 REMARK 465 LYS A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PHE A 309 REMARK 465 SER A 310 REMARK 465 ILE A 311 REMARK 465 VAL A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 CYS A 315 REMARK 465 ASN A 316 REMARK 465 HIS A 317 REMARK 465 LEU A 318 REMARK 465 THR A 319 REMARK 465 ARG A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 MET A 323 REMARK 465 LYS A 324 REMARK 465 LYS A 325 REMARK 465 VAL A 326 REMARK 465 HIS A 327 REMARK 465 LEU A 328 REMARK 465 ARG A 329 REMARK 465 THR A 330 REMARK 465 SER A 331 REMARK 465 GLU A 332 REMARK 465 ASP A 333 REMARK 465 LEU A 334 REMARK 465 ARG A 335 REMARK 465 ASN A 336 REMARK 465 CYS A 337 REMARK 465 GLU A 338 REMARK 465 SER A 339 REMARK 465 ASP A 340 REMARK 465 THR A 341 REMARK 465 GLU A 342 REMARK 465 GLU A 343 REMARK 465 ASN A 344 REMARK 465 ILE A 345 REMARK 465 ALA A 346 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 465 LYS A 349 REMARK 465 ALA A 350 REMARK 465 LEU A 351 REMARK 465 HIS A 352 REMARK 465 PRO A 353 REMARK 465 ARG A 354 REMARK 465 ARG A 355 REMARK 465 ARG A 356 REMARK 465 SER A 357 REMARK 465 SER A 358 REMARK 465 THR A 359 REMARK 465 SER A 360 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ARG B 302 REMARK 465 ARG B 303 REMARK 465 ARG B 304 REMARK 465 TRP B 305 REMARK 465 LYS B 306 REMARK 465 LEU B 307 REMARK 465 SER B 308 REMARK 465 PHE B 309 REMARK 465 SER B 310 REMARK 465 ILE B 311 REMARK 465 VAL B 312 REMARK 465 SER B 313 REMARK 465 LEU B 314 REMARK 465 CYS B 315 REMARK 465 ASN B 316 REMARK 465 HIS B 317 REMARK 465 LEU B 318 REMARK 465 THR B 319 REMARK 465 ARG B 320 REMARK 465 SER B 321 REMARK 465 LEU B 322 REMARK 465 MET B 323 REMARK 465 LYS B 324 REMARK 465 LYS B 325 REMARK 465 VAL B 326 REMARK 465 HIS B 327 REMARK 465 LEU B 328 REMARK 465 ARG B 329 REMARK 465 THR B 330 REMARK 465 SER B 331 REMARK 465 GLU B 332 REMARK 465 ASP B 333 REMARK 465 LEU B 334 REMARK 465 ARG B 335 REMARK 465 ASN B 336 REMARK 465 CYS B 337 REMARK 465 GLU B 338 REMARK 465 SER B 339 REMARK 465 ASP B 340 REMARK 465 THR B 341 REMARK 465 GLU B 342 REMARK 465 GLU B 343 REMARK 465 ASN B 344 REMARK 465 ILE B 345 REMARK 465 ALA B 346 REMARK 465 ARG B 347 REMARK 465 ARG B 348 REMARK 465 LYS B 349 REMARK 465 ALA B 350 REMARK 465 LEU B 351 REMARK 465 HIS B 352 REMARK 465 PRO B 353 REMARK 465 ARG B 354 REMARK 465 ARG B 355 REMARK 465 ARG B 356 REMARK 465 SER B 357 REMARK 465 SER B 358 REMARK 465 THR B 359 REMARK 465 SER B 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 21 109.34 -161.81 REMARK 500 ASN A 85 -155.34 -120.45 REMARK 500 ASP A 139 40.81 -142.04 REMARK 500 ASP A 161 83.27 56.87 REMARK 500 PHE A 236 72.52 -106.49 REMARK 500 ASN B 85 -163.52 -126.68 REMARK 500 ASP B 139 44.88 -152.34 REMARK 500 ASP B 161 83.62 62.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 190 O REMARK 620 2 HOH A2115 O 78.4 REMARK 620 3 HOH A2122 O 155.2 84.5 REMARK 620 4 HOH B2127 O 79.2 89.0 82.7 REMARK 620 5 ASN A 190 O 127.2 103.6 74.2 152.3 REMARK 620 6 HOH B2121 O 106.6 171.8 88.6 85.7 78.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D A1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE D1D B1302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE REMARK 900 DAPK2 IN COMPLEX WITH AMP REMARK 900 RELATED ID: 2YAA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE AUTOINHIBITED FORM OF MOUSE REMARK 900 DAPK2 IN COMPLEX WITH ATP DBREF 2YA9 A 1 360 UNP Q8VDF3 DAPK2_MOUSE 11 370 DBREF 2YA9 B 1 360 UNP Q8VDF3 DAPK2_MOUSE 11 370 SEQADV 2YA9 GLY A 0 UNP Q8VDF3 EXPRESSION TAG SEQADV 2YA9 GLY B 0 UNP Q8VDF3 EXPRESSION TAG SEQRES 1 A 361 GLY MET GLU THR PHE LYS GLN GLN LYS VAL GLU ASP PHE SEQRES 2 A 361 TYR ASP ILE GLY GLU GLU LEU GLY SER GLY GLN PHE ALA SEQRES 3 A 361 ILE VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLU SEQRES 4 A 361 TYR ALA ALA LYS PHE ILE LYS LYS ARG GLN SER ARG ALA SEQRES 5 A 361 SER ARG ARG GLY VAL CYS ARG GLU GLU ILE GLU ARG GLU SEQRES 6 A 361 VAL SER ILE LEU ARG GLN VAL LEU HIS PRO ASN ILE ILE SEQRES 7 A 361 THR LEU HIS ASP VAL TYR GLU ASN ARG THR ASP VAL VAL SEQRES 8 A 361 LEU ILE LEU GLU LEU VAL SER GLY GLY GLU LEU PHE ASP SEQRES 9 A 361 PHE LEU ALA GLN LYS GLU SER LEU SER GLU GLU GLU ALA SEQRES 10 A 361 THR SER PHE ILE LYS GLN ILE LEU ASP GLY VAL ASN TYR SEQRES 11 A 361 LEU HIS THR LYS LYS ILE ALA HIS PHE ASP LEU LYS PRO SEQRES 12 A 361 GLU ASN ILE MET LEU LEU ASP LYS ASN ILE PRO ILE PRO SEQRES 13 A 361 HIS ILE LYS LEU ILE ASP PHE GLY LEU ALA HIS GLU ILE SEQRES 14 A 361 GLU ASP GLY VAL GLU PHE LYS ASN ILE PHE GLY THR PRO SEQRES 15 A 361 GLU PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU SEQRES 16 A 361 GLY LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR SEQRES 17 A 361 TYR ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP SEQRES 18 A 361 THR LYS GLN GLU THR LEU ALA ASN ILE THR ALA VAL SER SEQRES 19 A 361 TYR ASP PHE ASP GLU GLU PHE PHE SER GLN THR SER GLU SEQRES 20 A 361 LEU ALA LYS ASP PHE ILE ARG LYS LEU LEU VAL LYS GLU SEQRES 21 A 361 THR ARG LYS ARG LEU THR ILE GLN GLU ALA LEU ARG HIS SEQRES 22 A 361 PRO TRP ILE THR PRO VAL ASP THR GLN GLN ALA MET VAL SEQRES 23 A 361 ARG ARG GLU SER VAL VAL ASN LEU GLU ASN PHE LYS LYS SEQRES 24 A 361 GLN TYR VAL ARG ARG ARG TRP LYS LEU SER PHE SER ILE SEQRES 25 A 361 VAL SER LEU CYS ASN HIS LEU THR ARG SER LEU MET LYS SEQRES 26 A 361 LYS VAL HIS LEU ARG THR SER GLU ASP LEU ARG ASN CYS SEQRES 27 A 361 GLU SER ASP THR GLU GLU ASN ILE ALA ARG ARG LYS ALA SEQRES 28 A 361 LEU HIS PRO ARG ARG ARG SER SER THR SER SEQRES 1 B 361 GLY MET GLU THR PHE LYS GLN GLN LYS VAL GLU ASP PHE SEQRES 2 B 361 TYR ASP ILE GLY GLU GLU LEU GLY SER GLY GLN PHE ALA SEQRES 3 B 361 ILE VAL LYS LYS CYS ARG GLU LYS SER THR GLY LEU GLU SEQRES 4 B 361 TYR ALA ALA LYS PHE ILE LYS LYS ARG GLN SER ARG ALA SEQRES 5 B 361 SER ARG ARG GLY VAL CYS ARG GLU GLU ILE GLU ARG GLU SEQRES 6 B 361 VAL SER ILE LEU ARG GLN VAL LEU HIS PRO ASN ILE ILE SEQRES 7 B 361 THR LEU HIS ASP VAL TYR GLU ASN ARG THR ASP VAL VAL SEQRES 8 B 361 LEU ILE LEU GLU LEU VAL SER GLY GLY GLU LEU PHE ASP SEQRES 9 B 361 PHE LEU ALA GLN LYS GLU SER LEU SER GLU GLU GLU ALA SEQRES 10 B 361 THR SER PHE ILE LYS GLN ILE LEU ASP GLY VAL ASN TYR SEQRES 11 B 361 LEU HIS THR LYS LYS ILE ALA HIS PHE ASP LEU LYS PRO SEQRES 12 B 361 GLU ASN ILE MET LEU LEU ASP LYS ASN ILE PRO ILE PRO SEQRES 13 B 361 HIS ILE LYS LEU ILE ASP PHE GLY LEU ALA HIS GLU ILE SEQRES 14 B 361 GLU ASP GLY VAL GLU PHE LYS ASN ILE PHE GLY THR PRO SEQRES 15 B 361 GLU PHE VAL ALA PRO GLU ILE VAL ASN TYR GLU PRO LEU SEQRES 16 B 361 GLY LEU GLU ALA ASP MET TRP SER ILE GLY VAL ILE THR SEQRES 17 B 361 TYR ILE LEU LEU SER GLY ALA SER PRO PHE LEU GLY ASP SEQRES 18 B 361 THR LYS GLN GLU THR LEU ALA ASN ILE THR ALA VAL SER SEQRES 19 B 361 TYR ASP PHE ASP GLU GLU PHE PHE SER GLN THR SER GLU SEQRES 20 B 361 LEU ALA LYS ASP PHE ILE ARG LYS LEU LEU VAL LYS GLU SEQRES 21 B 361 THR ARG LYS ARG LEU THR ILE GLN GLU ALA LEU ARG HIS SEQRES 22 B 361 PRO TRP ILE THR PRO VAL ASP THR GLN GLN ALA MET VAL SEQRES 23 B 361 ARG ARG GLU SER VAL VAL ASN LEU GLU ASN PHE LYS LYS SEQRES 24 B 361 GLN TYR VAL ARG ARG ARG TRP LYS LEU SER PHE SER ILE SEQRES 25 B 361 VAL SER LEU CYS ASN HIS LEU THR ARG SER LEU MET LYS SEQRES 26 B 361 LYS VAL HIS LEU ARG THR SER GLU ASP LEU ARG ASN CYS SEQRES 27 B 361 GLU SER ASP THR GLU GLU ASN ILE ALA ARG ARG LYS ALA SEQRES 28 B 361 LEU HIS PRO ARG ARG ARG SER SER THR SER HET D1D A1302 8 HET CA A1303 1 HET D1D B1302 8 HETNAM D1D (4S,5S)-1,2-DITHIANE-4,5-DIOL HETNAM CA CALCIUM ION FORMUL 3 D1D 2(C4 H8 O2 S2) FORMUL 4 CA CA 2+ FORMUL 5 HOH *413(H2 O) HELIX 1 1 LYS A 8 PHE A 12 1 5 HELIX 2 2 CYS A 57 ARG A 69 1 13 HELIX 3 3 GLU A 100 ALA A 106 1 7 HELIX 4 4 SER A 112 LYS A 133 1 22 HELIX 5 5 LYS A 141 GLU A 143 5 3 HELIX 6 6 THR A 180 VAL A 184 5 5 HELIX 7 7 ALA A 185 ASN A 190 1 6 HELIX 8 8 LEU A 196 GLY A 213 1 18 HELIX 9 9 THR A 221 ALA A 231 1 11 HELIX 10 10 ASP A 237 SER A 242 1 6 HELIX 11 11 SER A 245 LEU A 256 1 12 HELIX 12 12 THR A 265 HIS A 272 1 8 HELIX 13 13 ASP A 279 SER A 289 1 11 HELIX 14 14 ASN A 292 TYR A 300 1 9 HELIX 15 15 LYS B 8 PHE B 12 1 5 HELIX 16 16 CYS B 57 GLN B 70 1 14 HELIX 17 17 GLU B 100 ALA B 106 1 7 HELIX 18 18 SER B 112 LYS B 133 1 22 HELIX 19 19 LYS B 141 GLU B 143 5 3 HELIX 20 20 THR B 180 VAL B 184 5 5 HELIX 21 21 ALA B 185 ASN B 190 1 6 HELIX 22 22 LEU B 196 GLY B 213 1 18 HELIX 23 23 THR B 221 VAL B 232 1 12 HELIX 24 24 ASP B 237 SER B 242 1 6 HELIX 25 25 SER B 245 LEU B 256 1 12 HELIX 26 26 THR B 265 HIS B 272 1 8 HELIX 27 27 ASP B 279 SER B 289 1 11 HELIX 28 28 ASN B 292 VAL B 301 1 10 SHEET 1 AA 5 TYR A 13 GLY A 20 0 SHEET 2 AA 5 ALA A 25 GLU A 32 -1 O VAL A 27 N LEU A 19 SHEET 3 AA 5 GLU A 38 LYS A 45 -1 O TYR A 39 N CYS A 30 SHEET 4 AA 5 ASP A 88 GLU A 94 -1 O VAL A 89 N ILE A 44 SHEET 5 AA 5 LEU A 79 GLU A 84 -1 N HIS A 80 O ILE A 92 SHEET 1 AB 2 ILE A 135 ALA A 136 0 SHEET 2 AB 2 HIS A 166 GLU A 167 -1 O HIS A 166 N ALA A 136 SHEET 1 AC 2 ILE A 145 LEU A 147 0 SHEET 2 AC 2 ILE A 157 LEU A 159 -1 O LYS A 158 N MET A 146 SHEET 1 BA 5 TYR B 13 SER B 21 0 SHEET 2 BA 5 ILE B 26 GLU B 32 -1 O VAL B 27 N LEU B 19 SHEET 3 BA 5 GLU B 38 LYS B 45 -1 O TYR B 39 N CYS B 30 SHEET 4 BA 5 ASP B 88 LEU B 93 -1 O VAL B 89 N ILE B 44 SHEET 5 BA 5 LEU B 79 GLU B 84 -1 N HIS B 80 O ILE B 92 SHEET 1 BB 2 ILE B 135 ALA B 136 0 SHEET 2 BB 2 HIS B 166 GLU B 167 -1 O HIS B 166 N ALA B 136 SHEET 1 BC 2 ILE B 145 LEU B 147 0 SHEET 2 BC 2 ILE B 157 LEU B 159 -1 O LYS B 158 N MET B 146 LINK CA CA A1303 O ASN B 190 1555 1555 2.43 LINK CA CA A1303 O HOH A2115 1555 1555 2.46 LINK CA CA A1303 O HOH A2122 1555 1555 3.07 LINK CA CA A1303 O HOH B2127 1555 1555 3.07 LINK CA CA A1303 O ASN A 190 1555 1555 2.48 LINK CA CA A1303 O HOH B2121 1555 1555 2.43 SITE 1 AC1 7 PHE A 178 GLY A 179 HOH A2206 HOH A2207 SITE 2 AC1 7 ILE B 177 D1D B1302 HOH B2206 SITE 1 AC2 6 ASN A 190 HOH A2115 HOH A2122 ASN B 190 SITE 2 AC2 6 HOH B2121 HOH B2127 SITE 1 AC3 5 D1D A1302 HOH A2206 PHE B 178 GLY B 179 SITE 2 AC3 5 HOH B2206 CRYST1 64.040 86.440 124.270 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015615 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011569 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008047 0.00000