PDB Short entry for 2YU7 HEADER SIGNALING PROTEIN 05-APR-07 2YU7 TITLE SOLUTION STRUCTURE OF THE SHP-1 C-TERMINAL SH2 DOMAIN COMPLEXED WITH A TITLE 2 TYROSINE-PHOSPHORYLATED PEPTIDE FROM NKG2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN; COMPND 5 SYNONYM: SH2-DOMAIN PHOSPHATASE 1, PROTEIN-TYROSINE PHOSPHATASE 1C, COMPND 6 PTP-1C, HEMATOPOIETIC CELL PROTEIN-TYROSINE PHOSPHATASE, SH-PTP1, COMPND 7 PROTEIN-TYROSINE PHOSPHATASE SHP-1; COMPND 8 EC: 3.1.3.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: NATURAL KILLER GROUP 2A; COMPND 12 CHAIN: B; COMPND 13 SYNONYM: NKG2A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHP1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040607-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THE HUMAN NKG2A PHOSPHORYLATED PEPTIDE IS CHEMICALY SOURCE 12 SYNTHESIZED. KEYWDS SH2 DOMAIN, PROTEIN-PEPTIDE COMPLEX, PHOSPHORYLATED PEPTIDE KEYWDS 2 RECOGNITION, PHOSPHOTYROSINE BINDING DOMAIN, SIGNAL TRANSDUCTION, KEYWDS 3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 4 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 5 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.KASAI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YU7 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2YU7 1 VERSN REVDAT 1 15-APR-08 2YU7 0 JRNL AUTH T.KASAI,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SHP-1 C-TERMINAL SH2 DOMAIN JRNL TITL 2 COMPLEXED WITH A TYROSINE-PHOSPHORYLATED PEPTIDE FROM NKG2A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YU7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027139. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296; 298 REMARK 210 PH : 7.4; 7.4 REMARK 210 IONIC STRENGTH : 120MM; 120MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.89MM SHP1 SH2 DOMAIN U REMARK 210 -15N,13C; 0.89MM NKG2A PEPTIDE; REMARK 210 20MM D-TRIS-HCL (PH 7.4); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_F1-15N,13C-FILTERED_15N-SEPARATED_NOESY; 3D_ REMARK 210 F1-15N,13C-FILTERED_13C-SEPARATED_NOESY; 2D_F2-15N,13C-FILTERED_ REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9810, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 10 -68.19 -93.80 REMARK 500 1 SER A 36 -176.56 -60.54 REMARK 500 1 PRO A 56 88.68 -69.65 REMARK 500 1 GLU A 80 97.54 -38.34 REMARK 500 1 PRO A 110 83.60 -69.75 REMARK 500 1 PRO A 115 96.46 -69.81 REMARK 500 1 SER A 116 98.87 -63.74 REMARK 500 1 THR B 2 34.43 38.57 REMARK 500 1 GLU B 5 76.19 -105.86 REMARK 500 1 LEU B 11 161.26 -41.57 REMARK 500 2 TYR A 9 120.12 -38.80 REMARK 500 2 GLU A 19 -39.54 -39.33 REMARK 500 2 ASP A 42 176.55 -59.14 REMARK 500 2 ALA A 54 -72.04 -86.78 REMARK 500 2 GLU A 70 56.90 -91.50 REMARK 500 2 GLU A 80 93.81 -34.55 REMARK 500 2 PRO A 110 98.33 -69.68 REMARK 500 2 TYR A 112 -64.94 -102.01 REMARK 500 2 GLU B 10 152.63 -49.96 REMARK 500 3 HIS A 12 104.54 -43.57 REMARK 500 3 GLU A 80 95.59 -41.66 REMARK 500 3 ALA A 103 146.38 -37.98 REMARK 500 3 PRO A 110 88.12 -69.77 REMARK 500 3 GLU B 10 156.03 -38.18 REMARK 500 4 SER A 5 -61.19 -99.02 REMARK 500 4 SER A 6 160.69 -44.49 REMARK 500 4 HIS A 10 38.36 -90.75 REMARK 500 4 MET A 13 138.18 -174.73 REMARK 500 4 PRO A 56 -170.33 -69.77 REMARK 500 4 GLU A 70 46.76 -90.91 REMARK 500 4 GLU A 80 94.46 -34.55 REMARK 500 4 PRO A 110 84.79 -69.85 REMARK 500 4 TYR A 111 104.44 -41.60 REMARK 500 4 PRO A 115 -168.90 -69.75 REMARK 500 4 GLN B 4 153.45 -36.93 REMARK 500 5 SER A 6 150.40 -41.78 REMARK 500 5 HIS A 10 -62.53 -104.98 REMARK 500 5 PRO A 56 87.50 -69.68 REMARK 500 5 GLU A 70 46.31 -84.23 REMARK 500 5 PRO A 110 92.81 -69.84 REMARK 500 5 TYR A 111 108.68 -54.34 REMARK 500 5 ILE B 6 136.37 -34.11 REMARK 500 5 PTR B 8 153.62 61.42 REMARK 500 5 GLU B 10 70.48 -113.77 REMARK 500 5 LEU B 11 160.94 -39.78 REMARK 500 5 GLN B 14 34.42 33.19 REMARK 500 6 SER A 6 26.16 38.97 REMARK 500 6 HIS A 10 -68.62 -99.05 REMARK 500 6 MET A 13 145.28 -173.87 REMARK 500 6 GLU A 19 -35.68 -36.65 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003119.2 RELATED DB: TARGETDB DBREF 2YU7 A 8 112 UNP P29350 PTN6_HUMAN 110 214 DBREF 2YU7 B 1 15 UNP P26715 NKG2A_HUMAN 33 47 SEQADV 2YU7 GLY A 1 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 2 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 3 UNP P29350 EXPRESSION TAG SEQADV 2YU7 GLY A 4 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 5 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 6 UNP P29350 EXPRESSION TAG SEQADV 2YU7 GLY A 7 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 113 UNP P29350 EXPRESSION TAG SEQADV 2YU7 GLY A 114 UNP P29350 EXPRESSION TAG SEQADV 2YU7 PRO A 115 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 116 UNP P29350 EXPRESSION TAG SEQADV 2YU7 SER A 117 UNP P29350 EXPRESSION TAG SEQADV 2YU7 GLY A 118 UNP P29350 EXPRESSION TAG SEQRES 1 A 118 GLY SER SER GLY SER SER GLY TRP TYR HIS GLY HIS MET SEQRES 2 A 118 SER GLY GLY GLN ALA GLU THR LEU LEU GLN ALA LYS GLY SEQRES 3 A 118 GLU PRO TRP THR PHE LEU VAL ARG GLU SER LEU SER GLN SEQRES 4 A 118 PRO GLY ASP PHE VAL LEU SER VAL LEU SER ASP GLN PRO SEQRES 5 A 118 LYS ALA GLY PRO GLY SER PRO LEU ARG VAL THR HIS ILE SEQRES 6 A 118 LYS VAL MET CYS GLU GLY GLY ARG TYR THR VAL GLY GLY SEQRES 7 A 118 LEU GLU THR PHE ASP SER LEU THR ASP LEU VAL GLU HIS SEQRES 8 A 118 PHE LYS LYS THR GLY ILE GLU GLU ALA SER GLY ALA PHE SEQRES 9 A 118 VAL TYR LEU ARG GLN PRO TYR TYR SER GLY PRO SER SER SEQRES 10 A 118 GLY SEQRES 1 B 15 ALA THR GLU GLN GLU ILE THR PTR ALA GLU LEU ASN LEU SEQRES 2 B 15 GLN LYS MODRES 2YU7 PTR B 8 TYR O-PHOSPHOTYROSINE HET PTR B 8 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 SER A 14 GLY A 26 1 13 HELIX 2 2 SER A 84 THR A 95 1 12 SHEET 1 A 4 LEU A 60 VAL A 67 0 SHEET 2 A 4 PHE A 43 PRO A 52 -1 N LEU A 45 O ILE A 65 SHEET 3 A 4 THR A 30 GLU A 35 -1 N THR A 30 O LEU A 48 SHEET 4 A 4 GLN A 109 PRO A 110 1 O GLN A 109 N PHE A 31 SHEET 1 B 2 ILE A 97 GLU A 98 0 SHEET 2 B 2 PHE A 104 VAL A 105 -1 O VAL A 105 N ILE A 97 LINK C THR B 7 N PTR B 8 1555 1555 1.33 LINK C PTR B 8 N ALA B 9 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000