PDB Short entry for 2YUW HEADER CELL ADHESION 06-APR-07 2YUW TITLE SOLUTION STRUCTURE OF 2ND FIBRONECTIN DOMAIN OF SLOW TYPE MYOSIN- TITLE 2 BINDING PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN BINDING PROTEIN C, SLOW TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN III DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYBPC1; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050620-14; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS FIBRONECTIN III DOMAIN, MYOSIN-BINDING PROTEIN C, SLOW-TYPE PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.N.NIRAULA,S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 16-MAR-22 2YUW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2YUW 1 VERSN REVDAT 1 08-APR-08 2YUW 0 JRNL AUTH T.N.NIRAULA,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF 2ND FIBRONECTIN DOMAIN OF SLOW TYPE JRNL TITL 2 MYOSIN-BINDING PROTEIN C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YUW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000027164. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.95MM SAMPLE U-15N,13C; 20MM D REMARK 210 -TRIS-HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 123.98 -37.48 REMARK 500 1 ASP A 60 -72.25 -113.15 REMARK 500 2 SER A 3 152.68 -35.50 REMARK 500 2 SER A 5 171.46 -57.55 REMARK 500 2 ASP A 32 -37.64 -35.90 REMARK 500 2 PHE A 48 174.73 -54.01 REMARK 500 2 SER A 97 -72.64 -63.37 REMARK 500 2 VAL A 102 102.61 -41.60 REMARK 500 2 SER A 105 112.81 -169.24 REMARK 500 3 ALA A 36 99.87 -64.21 REMARK 500 3 THR A 74 156.81 -49.46 REMARK 500 3 SER A 97 -70.15 -36.40 REMARK 500 3 VAL A 102 76.62 -100.10 REMARK 500 3 SER A 105 -69.33 -98.56 REMARK 500 3 SER A 109 31.76 -94.54 REMARK 500 4 SER A 6 109.48 -46.59 REMARK 500 4 ASP A 21 -28.00 -38.67 REMARK 500 4 ALA A 36 38.84 35.55 REMARK 500 4 ASP A 60 -65.09 -123.21 REMARK 500 4 SER A 97 -70.49 -46.14 REMARK 500 4 VAL A 102 82.84 -55.68 REMARK 500 5 SER A 2 74.53 -116.92 REMARK 500 5 SER A 6 46.28 34.75 REMARK 500 5 ASP A 60 -70.99 -133.48 REMARK 500 5 ASP A 63 37.35 -89.87 REMARK 500 5 SER A 97 -74.28 -62.90 REMARK 500 5 VAL A 102 82.38 -59.45 REMARK 500 5 SER A 105 109.63 -175.02 REMARK 500 6 ASP A 21 -33.19 -35.46 REMARK 500 6 ASP A 60 -68.24 -102.55 REMARK 500 6 SER A 97 -73.24 -48.57 REMARK 500 6 VAL A 102 84.05 -54.67 REMARK 500 7 ALA A 36 -174.95 -56.46 REMARK 500 7 ALA A 37 -34.68 -33.85 REMARK 500 7 GLU A 52 37.82 -83.33 REMARK 500 7 ASP A 60 -74.92 -125.47 REMARK 500 7 TYR A 96 177.86 -55.93 REMARK 500 7 SER A 97 -71.53 -78.53 REMARK 500 7 VAL A 102 93.48 -39.19 REMARK 500 8 SER A 3 173.00 -54.44 REMARK 500 8 SER A 6 -46.61 -130.36 REMARK 500 8 ASP A 21 -30.86 -38.30 REMARK 500 8 ALA A 36 91.38 -53.45 REMARK 500 8 ALA A 37 37.63 36.42 REMARK 500 8 GLU A 52 -35.56 -131.59 REMARK 500 8 ASP A 60 -174.98 -53.05 REMARK 500 8 THR A 65 34.07 -99.01 REMARK 500 8 VAL A 102 81.19 -58.57 REMARK 500 8 SER A 105 50.62 -115.91 REMARK 500 8 PRO A 107 85.30 -69.74 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000567.4 RELATED DB: TARGETDB DBREF 2YUW A 8 104 UNP Q569K7 Q569K7_HUMAN 718 814 SEQADV 2YUW GLY A 1 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 2 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 3 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW GLY A 4 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 5 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 6 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW GLY A 7 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 105 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW GLY A 106 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW PRO A 107 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 108 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW SER A 109 UNP Q569K7 EXPRESSION TAG SEQADV 2YUW GLY A 110 UNP Q569K7 EXPRESSION TAG SEQRES 1 A 110 GLY SER SER GLY SER SER GLY THR SER PRO PRO THR LEU SEQRES 2 A 110 LEU THR VAL ASP SER VAL THR ASP THR THR VAL THR MET SEQRES 3 A 110 ARG TRP ARG PRO PRO ASP HIS ILE GLY ALA ALA GLY LEU SEQRES 4 A 110 ASP GLY TYR VAL LEU GLU TYR CYS PHE GLU GLY THR GLU SEQRES 5 A 110 ASP TRP ILE VAL ALA ASN LYS ASP LEU ILE ASP LYS THR SEQRES 6 A 110 LYS PHE THR ILE THR GLY LEU PRO THR ASP ALA LYS ILE SEQRES 7 A 110 PHE VAL ARG VAL LYS ALA VAL ASN ALA ALA GLY ALA SER SEQRES 8 A 110 GLU PRO LYS TYR TYR SER GLN PRO ILE LEU VAL LYS GLU SEQRES 9 A 110 SER GLY PRO SER SER GLY SHEET 1 A 3 THR A 12 VAL A 19 0 SHEET 2 A 3 VAL A 24 ARG A 29 -1 O THR A 25 N SER A 18 SHEET 3 A 3 LYS A 66 ILE A 69 -1 O PHE A 67 N MET A 26 SHEET 1 B 4 TRP A 54 VAL A 56 0 SHEET 2 B 4 LEU A 39 PHE A 48 -1 N TYR A 46 O ILE A 55 SHEET 3 B 4 LYS A 77 ASN A 86 -1 O ARG A 81 N GLU A 45 SHEET 4 B 4 LYS A 94 TYR A 95 -1 O LYS A 94 N VAL A 82 SHEET 1 C 3 GLY A 89 ALA A 90 0 SHEET 2 C 3 LYS A 77 ASN A 86 -1 N ASN A 86 O GLY A 89 SHEET 3 C 3 ILE A 100 LEU A 101 -1 O ILE A 100 N ILE A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000