PDB Short entry for 2YW6 HEADER OXIDOREDUCTASE 19-APR-07 2YW6 TITLE STRUCTURAL STUDIES OF N TERMINAL DELETION MUTANT OF DPS FROM TITLE 2 MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PROTECTION DURING STARVATION PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DNA BINDING PROTEIN FROM STATIONARY PHASE CELLS; COMPND 5 EC: 1.16.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 GENE: DPS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-MSDPSDELTA9 KEYWDS DNA-BINDING PROTEIN, QUARTERNARY ASSEMBLY, FERROXIDATION, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ROY,R.SARASWATHI,S.GUPTA,K.SEKAR,D.CHATTERJI,M.VIJAYAN REVDAT 3 13-JUL-11 2YW6 1 VERSN REVDAT 2 24-FEB-09 2YW6 1 VERSN REVDAT 1 17-JUL-07 2YW6 0 JRNL AUTH S.ROY,R.SARASWATHI,S.GUPTA,K.SEKAR,D.CHATTERJI,M.VIJAYAN JRNL TITL ROLE OF N AND C-TERMINAL TAILS IN DNA BINDING AND ASSEMBLY JRNL TITL 2 IN DPS: STRUCTURAL STUDIES OF MYCOBACTERIUM SMEGMATIS DPS JRNL TITL 3 DELETION MUTANTS JRNL REF J.MOL.BIOL. V. 370 752 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17543333 JRNL DOI 10.1016/J.JMB.2007.05.004 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2414985.540 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 15897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 776 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2260 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 130 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : 3.78000 REMARK 3 B33 (A**2) : -2.64000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.37 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.77 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.310 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.460 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.120 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.780 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 46.69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB027210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 17.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1VEI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER IN 50MM TRIS-HCL REMARK 280 (PH8.0), 0.2M CALCIUM CHLORIDE, 0.1M HEPES-NA PH7.5, 28% REMARK 280 POLYETHELENE GLYCOL 400, MICROBATH UNDER OIL, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 141.69133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.84567 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.69133 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.84567 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 141.69133 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 70.84567 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.69133 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 70.84567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 36040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -147.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -43.72150 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.72786 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 70.84567 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -43.72150 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 75.72786 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 70.84567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 PHE A 4 REMARK 465 THR A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 ALA A 159 REMARK 465 GLY A 160 REMARK 465 GLY A 161 REMARK 465 GLN A 162 REMARK 465 LEU A 163 REMARK 465 THR A 164 REMARK 465 HIS A 165 REMARK 465 GLU A 166 REMARK 465 GLY A 167 REMARK 465 GLN A 168 REMARK 465 SER A 169 REMARK 465 THR A 170 REMARK 465 GLU A 171 REMARK 465 LYS A 172 REMARK 465 GLY A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 LYS A 177 REMARK 465 ALA A 178 REMARK 465 ARG A 179 REMARK 465 ARG A 180 REMARK 465 LYS A 181 REMARK 465 SER A 182 REMARK 465 ALA A 183 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 PHE B 4 REMARK 465 THR B 5 REMARK 465 ILE B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 GLY B 161 REMARK 465 GLN B 162 REMARK 465 LEU B 163 REMARK 465 THR B 164 REMARK 465 HIS B 165 REMARK 465 GLU B 166 REMARK 465 GLY B 167 REMARK 465 GLN B 168 REMARK 465 SER B 169 REMARK 465 THR B 170 REMARK 465 GLU B 171 REMARK 465 LYS B 172 REMARK 465 GLY B 173 REMARK 465 ALA B 174 REMARK 465 ALA B 175 REMARK 465 ASP B 176 REMARK 465 LYS B 177 REMARK 465 ALA B 178 REMARK 465 ARG B 179 REMARK 465 ARG B 180 REMARK 465 LYS B 181 REMARK 465 SER B 182 REMARK 465 ALA B 183 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 SER C 3 REMARK 465 PHE C 4 REMARK 465 THR C 5 REMARK 465 ILE C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 SER C 10 REMARK 465 GLY C 161 REMARK 465 GLN C 162 REMARK 465 LEU C 163 REMARK 465 THR C 164 REMARK 465 HIS C 165 REMARK 465 GLU C 166 REMARK 465 GLY C 167 REMARK 465 GLN C 168 REMARK 465 SER C 169 REMARK 465 THR C 170 REMARK 465 GLU C 171 REMARK 465 LYS C 172 REMARK 465 GLY C 173 REMARK 465 ALA C 174 REMARK 465 ALA C 175 REMARK 465 ASP C 176 REMARK 465 LYS C 177 REMARK 465 ALA C 178 REMARK 465 ARG C 179 REMARK 465 ARG C 180 REMARK 465 LYS C 181 REMARK 465 SER C 182 REMARK 465 ALA C 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 202 O HOH A 211 2.14 REMARK 500 O HIS C 39 O HOH C 225 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 225 O HOH C 227 9555 2.05 REMARK 500 CD1 ILE C 87 CD1 ILE C 87 12555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 98 -145.73 -99.44 REMARK 500 LYS B 12 -95.28 -34.49 REMARK 500 ASN B 46 38.48 -94.92 REMARK 500 ASP B 93 -114.93 -15.92 REMARK 500 GLU B 98 -134.04 -107.67 REMARK 500 SER B 158 29.88 -79.44 REMARK 500 ALA B 159 -36.91 173.39 REMARK 500 ARG C 90 -171.91 39.65 REMARK 500 THR C 91 -45.28 -169.27 REMARK 500 TYR C 95 123.60 -35.76 REMARK 500 GLU C 98 -136.49 -96.24 REMARK 500 GLU C 157 67.62 -162.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 213 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH C 229 DISTANCE = 5.72 ANGSTROMS DBREF 2YW6 A 1 183 UNP Q8VP75 DPS_MYCSM 1 183 DBREF 2YW6 B 1 183 UNP Q8VP75 DPS_MYCSM 1 183 DBREF 2YW6 C 1 183 UNP Q8VP75 DPS_MYCSM 1 183 SEQRES 1 A 183 MET THR SER PHE THR ILE PRO GLY LEU SER ASP LYS LYS SEQRES 2 A 183 ALA SER ASP VAL ALA ASP LEU LEU GLN LYS GLN LEU SER SEQRES 3 A 183 THR TYR ASN ASP LEU HIS LEU THR LEU LYS HIS VAL HIS SEQRES 4 A 183 TRP ASN VAL VAL GLY PRO ASN PHE ILE GLY VAL HIS GLU SEQRES 5 A 183 MET ILE ASP PRO GLN VAL GLU LEU VAL ARG GLY TYR ALA SEQRES 6 A 183 ASP GLU VAL ALA GLU ARG ILE ALA THR LEU GLY LYS SER SEQRES 7 A 183 PRO LYS GLY THR PRO GLY ALA ILE ILE LYS ASP ARG THR SEQRES 8 A 183 TRP ASP ASP TYR SER VAL GLU ARG ASP THR VAL GLN ALA SEQRES 9 A 183 HIS LEU ALA ALA LEU ASP LEU VAL TYR ASN GLY VAL ILE SEQRES 10 A 183 GLU ASP THR ARG LYS SER ILE GLU LYS LEU GLU ASP LEU SEQRES 11 A 183 ASP LEU VAL SER GLN ASP LEU LEU ILE ALA HIS ALA GLY SEQRES 12 A 183 GLU LEU GLU LYS PHE GLN TRP PHE VAL ARG ALA HIS LEU SEQRES 13 A 183 GLU SER ALA GLY GLY GLN LEU THR HIS GLU GLY GLN SER SEQRES 14 A 183 THR GLU LYS GLY ALA ALA ASP LYS ALA ARG ARG LYS SER SEQRES 15 A 183 ALA SEQRES 1 B 183 MET THR SER PHE THR ILE PRO GLY LEU SER ASP LYS LYS SEQRES 2 B 183 ALA SER ASP VAL ALA ASP LEU LEU GLN LYS GLN LEU SER SEQRES 3 B 183 THR TYR ASN ASP LEU HIS LEU THR LEU LYS HIS VAL HIS SEQRES 4 B 183 TRP ASN VAL VAL GLY PRO ASN PHE ILE GLY VAL HIS GLU SEQRES 5 B 183 MET ILE ASP PRO GLN VAL GLU LEU VAL ARG GLY TYR ALA SEQRES 6 B 183 ASP GLU VAL ALA GLU ARG ILE ALA THR LEU GLY LYS SER SEQRES 7 B 183 PRO LYS GLY THR PRO GLY ALA ILE ILE LYS ASP ARG THR SEQRES 8 B 183 TRP ASP ASP TYR SER VAL GLU ARG ASP THR VAL GLN ALA SEQRES 9 B 183 HIS LEU ALA ALA LEU ASP LEU VAL TYR ASN GLY VAL ILE SEQRES 10 B 183 GLU ASP THR ARG LYS SER ILE GLU LYS LEU GLU ASP LEU SEQRES 11 B 183 ASP LEU VAL SER GLN ASP LEU LEU ILE ALA HIS ALA GLY SEQRES 12 B 183 GLU LEU GLU LYS PHE GLN TRP PHE VAL ARG ALA HIS LEU SEQRES 13 B 183 GLU SER ALA GLY GLY GLN LEU THR HIS GLU GLY GLN SER SEQRES 14 B 183 THR GLU LYS GLY ALA ALA ASP LYS ALA ARG ARG LYS SER SEQRES 15 B 183 ALA SEQRES 1 C 183 MET THR SER PHE THR ILE PRO GLY LEU SER ASP LYS LYS SEQRES 2 C 183 ALA SER ASP VAL ALA ASP LEU LEU GLN LYS GLN LEU SER SEQRES 3 C 183 THR TYR ASN ASP LEU HIS LEU THR LEU LYS HIS VAL HIS SEQRES 4 C 183 TRP ASN VAL VAL GLY PRO ASN PHE ILE GLY VAL HIS GLU SEQRES 5 C 183 MET ILE ASP PRO GLN VAL GLU LEU VAL ARG GLY TYR ALA SEQRES 6 C 183 ASP GLU VAL ALA GLU ARG ILE ALA THR LEU GLY LYS SER SEQRES 7 C 183 PRO LYS GLY THR PRO GLY ALA ILE ILE LYS ASP ARG THR SEQRES 8 C 183 TRP ASP ASP TYR SER VAL GLU ARG ASP THR VAL GLN ALA SEQRES 9 C 183 HIS LEU ALA ALA LEU ASP LEU VAL TYR ASN GLY VAL ILE SEQRES 10 C 183 GLU ASP THR ARG LYS SER ILE GLU LYS LEU GLU ASP LEU SEQRES 11 C 183 ASP LEU VAL SER GLN ASP LEU LEU ILE ALA HIS ALA GLY SEQRES 12 C 183 GLU LEU GLU LYS PHE GLN TRP PHE VAL ARG ALA HIS LEU SEQRES 13 C 183 GLU SER ALA GLY GLY GLN LEU THR HIS GLU GLY GLN SER SEQRES 14 C 183 THR GLU LYS GLY ALA ALA ASP LYS ALA ARG ARG LYS SER SEQRES 15 C 183 ALA FORMUL 4 HOH *185(H2 O) HELIX 1 1 LYS A 13 ASN A 41 1 29 HELIX 2 2 ASN A 46 LEU A 75 1 30 HELIX 3 3 THR A 82 ARG A 90 1 9 HELIX 4 4 VAL A 102 GLU A 128 1 27 HELIX 5 5 ASP A 131 GLU A 157 1 27 HELIX 6 6 ASP B 11 ASN B 41 1 31 HELIX 7 7 ASN B 46 GLY B 76 1 31 HELIX 8 8 THR B 82 ARG B 90 1 9 HELIX 9 9 VAL B 102 GLU B 128 1 27 HELIX 10 10 ASP B 131 LEU B 156 1 26 HELIX 11 11 LYS C 12 VAL C 42 1 31 HELIX 12 12 ASN C 46 LEU C 75 1 30 HELIX 13 13 THR C 82 ARG C 90 1 9 HELIX 14 14 THR C 101 GLU C 128 1 28 HELIX 15 15 ASP C 131 HIS C 155 1 25 SHEET 1 A 2 VAL A 42 VAL A 43 0 SHEET 2 A 2 ASP A 100 THR A 101 1 O ASP A 100 N VAL A 43 SHEET 1 B 2 VAL B 42 VAL B 43 0 SHEET 2 B 2 ASP B 100 THR B 101 1 O ASP B 100 N VAL B 43 CRYST1 87.443 87.443 212.537 90.00 90.00 120.00 P 62 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011436 0.006603 0.000000 0.00000 SCALE2 0.000000 0.013205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004705 0.00000