PDB Short entry for 2Z32 HEADER TRANSCRIPTION 31-MAY-07 2Z32 TITLE CRYSTAL STRUCTURE OF KEAP1 COMPLEXED WITH PROTHYMOSIN ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: KELCH-LIKE ECH-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KEAP1-DC, UNP RESIDUES 309-607; COMPND 5 SYNONYM: CYTOSOLIC INHIBITOR OF NRF2, INRF2, KEAP1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTHYMOSIN ALPHA; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: PROTHYMOSIN-A PEPTIDE, UNP RESIDUES 39-54; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: KEAP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS (DE3)_RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC PEPTIDE; THIS SEQUENCE OCCURS NATURALLY IN SOURCE 13 MOUSE. KEYWDS KELCH DOMAIN, B-PROPELLOR DOMAIN, NRF2 REGULATION, PROTHYMOSIN-A KEYWDS 2 INTERACTOR, CYTOPLASM, KELCH REPEAT, NUCLEUS, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATION, UBL CONJUGATION, ACETYLATION, KEYWDS 4 PHOSPHORYLATION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 5 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 6 GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA X-RAY DIFFRACTION AUTHOR B.PADMANABHAN,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 01-NOV-23 2Z32 1 REMARK SEQADV REVDAT 3 24-FEB-09 2Z32 1 VERSN REVDAT 2 29-APR-08 2Z32 1 JRNL REVDAT 1 11-MAR-08 2Z32 0 JRNL AUTH B.PADMANABHAN,Y.NAKAMURA,S.YOKOYAMA JRNL TITL STRUCTURAL ANALYSIS OF THE COMPLEX OF KEAP1 WITH A JRNL TITL 2 PROTHYMOSIN ALPHA PEPTIDE JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 64 233 2008 JRNL REFN ESSN 1744-3091 JRNL PMID 18391415 JRNL DOI 10.1107/S1744309108004995 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 20530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.1760 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2292 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : 2.49000 REMARK 3 B12 (A**2) : -0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.640 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2394 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3265 ; 1.619 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 7.410 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;30.088 ;23.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;14.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;24.759 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1885 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1091 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1613 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 242 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.250 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1532 ; 1.253 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2395 ; 2.021 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 998 ; 2.815 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 870 ; 4.236 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000027458. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21733 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.22800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDN ENTRY 1X2J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, LI2SO4, NA CITRATE, REMARK 280 PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.44000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.08000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.80000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 308 REMARK 465 THR A 309 REMARK 465 LEU A 310 REMARK 465 HIS A 311 REMARK 465 LYS A 312 REMARK 465 PRO A 313 REMARK 465 THR A 314 REMARK 465 GLN A 315 REMARK 465 ALA A 316 REMARK 465 VAL A 317 REMARK 465 PRO A 318 REMARK 465 CYS A 319 REMARK 465 ARG A 320 REMARK 465 ALA A 321 REMARK 465 PRO A 322 REMARK 465 LYS A 323 REMARK 465 ARG A 614 REMARK 465 LYS A 615 REMARK 465 GLN A 616 REMARK 465 ILE A 617 REMARK 465 ASP A 618 REMARK 465 GLN A 619 REMARK 465 GLN A 620 REMARK 465 ASN A 621 REMARK 465 CYS A 622 REMARK 465 THR A 623 REMARK 465 CYS A 624 REMARK 465 TYR A 625 REMARK 465 ALA B 39 REMARK 465 ALA B 49 REMARK 465 ASP B 50 REMARK 465 ASN B 51 REMARK 465 GLU B 52 REMARK 465 VAL B 53 REMARK 465 ASP B 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 47 CG CD OE1 NE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 184 O HOH A 240 2.06 REMARK 500 O SER A 408 O HOH A 245 2.15 REMARK 500 O HOH A 31 O HOH A 96 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 513 CB CYS A 513 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 326 -40.12 -141.89 REMARK 500 ARG A 336 -40.79 71.17 REMARK 500 HIS A 516 -123.76 58.56 REMARK 500 GLN A 528 -35.13 -136.19 REMARK 500 VAL A 547 -165.27 -117.38 REMARK 500 HIS A 575 -44.92 -136.84 REMARK 500 PRO A 612 -145.08 -87.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 705 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X2J RELATED DB: PDB REMARK 900 KEAP1-DC NATIVE REMARK 900 RELATED ID: 1X2R RELATED DB: PDB REMARK 900 KEAP1-DC WITH NRF2 'ETGE' PEPTIDE REMARK 900 RELATED ID: 2DYH RELATED DB: PDB REMARK 900 KEAP1-DC WITH NRF2 'DLG' PEPTIDE DBREF 2Z32 A 309 624 UNP Q9Z2X8 KEAP1_MOUSE 309 624 DBREF 2Z32 B 39 54 UNP P26350 PTMA_MOUSE 39 54 SEQADV 2Z32 MET A 308 UNP Q9Z2X8 INITIATING METHIONINE SEQADV 2Z32 TYR A 625 UNP Q9Z2X8 EXPRESSION TAG SEQRES 1 A 318 MET THR LEU HIS LYS PRO THR GLN ALA VAL PRO CYS ARG SEQRES 2 A 318 ALA PRO LYS VAL GLY ARG LEU ILE TYR THR ALA GLY GLY SEQRES 3 A 318 TYR PHE ARG GLN SER LEU SER TYR LEU GLU ALA TYR ASN SEQRES 4 A 318 PRO SER ASN GLY SER TRP LEU ARG LEU ALA ASP LEU GLN SEQRES 5 A 318 VAL PRO ARG SER GLY LEU ALA GLY CYS VAL VAL GLY GLY SEQRES 6 A 318 LEU LEU TYR ALA VAL GLY GLY ARG ASN ASN SER PRO ASP SEQRES 7 A 318 GLY ASN THR ASP SER SER ALA LEU ASP CYS TYR ASN PRO SEQRES 8 A 318 MET THR ASN GLN TRP SER PRO CYS ALA SER MET SER VAL SEQRES 9 A 318 PRO ARG ASN ARG ILE GLY VAL GLY VAL ILE ASP GLY HIS SEQRES 10 A 318 ILE TYR ALA VAL GLY GLY SER HIS GLY CYS ILE HIS HIS SEQRES 11 A 318 SER SER VAL GLU ARG TYR GLU PRO GLU ARG ASP GLU TRP SEQRES 12 A 318 HIS LEU VAL ALA PRO MET LEU THR ARG ARG ILE GLY VAL SEQRES 13 A 318 GLY VAL ALA VAL LEU ASN ARG LEU LEU TYR ALA VAL GLY SEQRES 14 A 318 GLY PHE ASP GLY THR ASN ARG LEU ASN SER ALA GLU CYS SEQRES 15 A 318 TYR TYR PRO GLU ARG ASN GLU TRP ARG MET ILE THR PRO SEQRES 16 A 318 MET ASN THR ILE ARG SER GLY ALA GLY VAL CYS VAL LEU SEQRES 17 A 318 HIS ASN CYS ILE TYR ALA ALA GLY GLY TYR ASP GLY GLN SEQRES 18 A 318 ASP GLN LEU ASN SER VAL GLU ARG TYR ASP VAL GLU THR SEQRES 19 A 318 GLU THR TRP THR PHE VAL ALA PRO MET ARG HIS HIS ARG SEQRES 20 A 318 SER ALA LEU GLY ILE THR VAL HIS GLN GLY LYS ILE TYR SEQRES 21 A 318 VAL LEU GLY GLY TYR ASP GLY HIS THR PHE LEU ASP SER SEQRES 22 A 318 VAL GLU CYS TYR ASP PRO ASP SER ASP THR TRP SER GLU SEQRES 23 A 318 VAL THR ARG MET THR SER GLY ARG SER GLY VAL GLY VAL SEQRES 24 A 318 ALA VAL THR MET GLU PRO CYS ARG LYS GLN ILE ASP GLN SEQRES 25 A 318 GLN ASN CYS THR CYS TYR SEQRES 1 B 16 ALA GLN ASN GLU GLU ASN GLY GLU GLN GLU ALA ASP ASN SEQRES 2 B 16 GLU VAL ASP HET SO4 A 701 5 HET SO4 A 702 5 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 A 705 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *250(H2 O) HELIX 1 1 PRO A 492 ASN A 495 5 4 SHEET 1 A 4 TRP A 352 LEU A 355 0 SHEET 2 A 4 LEU A 342 TYR A 345 -1 N LEU A 342 O LEU A 355 SHEET 3 A 4 LEU A 327 ALA A 331 -1 N ILE A 328 O TYR A 345 SHEET 4 A 4 GLY A 605 THR A 609 -1 O ALA A 607 N TYR A 329 SHEET 1 B 4 ALA A 366 VAL A 370 0 SHEET 2 B 4 LEU A 373 VAL A 377 -1 O TYR A 375 N CYS A 368 SHEET 3 B 4 LEU A 393 TYR A 396 -1 O TYR A 396 N LEU A 374 SHEET 4 B 4 TRP A 403 CYS A 406 -1 O CYS A 406 N LEU A 393 SHEET 1 C 2 ARG A 380 SER A 383 0 SHEET 2 C 2 GLY A 386 ASP A 389 -1 O GLY A 386 N SER A 383 SHEET 1 D 4 GLY A 417 ILE A 421 0 SHEET 2 D 4 HIS A 424 VAL A 428 -1 O TYR A 426 N GLY A 419 SHEET 3 D 4 VAL A 440 GLU A 444 -1 O GLU A 441 N ALA A 427 SHEET 4 D 4 GLU A 449 LEU A 452 -1 O HIS A 451 N ARG A 442 SHEET 1 E 2 SER A 431 HIS A 432 0 SHEET 2 E 2 ILE A 435 HIS A 436 -1 O ILE A 435 N HIS A 432 SHEET 1 F 4 GLY A 464 LEU A 468 0 SHEET 2 F 4 LEU A 471 VAL A 475 -1 O VAL A 475 N GLY A 464 SHEET 3 F 4 ALA A 487 TYR A 491 -1 O TYR A 490 N LEU A 472 SHEET 4 F 4 GLU A 496 ILE A 500 -1 O ARG A 498 N CYS A 489 SHEET 1 G 4 GLY A 511 LEU A 515 0 SHEET 2 G 4 CYS A 518 ALA A 522 -1 O TYR A 520 N CYS A 513 SHEET 3 G 4 VAL A 534 ASP A 538 -1 O GLU A 535 N ALA A 521 SHEET 4 G 4 THR A 543 PHE A 546 -1 O THR A 545 N ARG A 536 SHEET 1 H 4 GLY A 558 HIS A 562 0 SHEET 2 H 4 LYS A 565 LEU A 569 -1 O TYR A 567 N THR A 560 SHEET 3 H 4 SER A 580 ASP A 585 -1 O TYR A 584 N ILE A 566 SHEET 4 H 4 THR A 590 ARG A 596 -1 O SER A 592 N CYS A 583 SITE 1 AC1 4 HOH A 62 GLY A 325 HIS A 562 GLN A 563 SITE 1 AC2 7 HOH A 64 HOH A 187 HOH A 199 HOH A 218 SITE 2 AC2 7 GLN A 359 ASN A 532 HIS A 553 SITE 1 AC3 8 HOH A 56 HOH A 165 CYS A 434 ILE A 435 SITE 2 AC3 8 HIS A 436 ARG A 459 ARG A 494 ARG A 498 SITE 1 AC4 8 HOH A 17 HOH A 68 HOH A 95 HOH A 161 SITE 2 AC4 8 HIS A 437 SER A 438 SER A 439 ARG A 494 SITE 1 AC5 8 HOH A 130 HOH A 217 ILE A 421 ASP A 422 SITE 2 AC5 8 HIS A 424 TYR A 426 ARG A 442 PRO A 492 CRYST1 103.515 103.515 56.160 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009660 0.005577 0.000000 0.00000 SCALE2 0.000000 0.011155 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017806 0.00000